mRNA_M-pyrifera_M_contig6705.16227.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: D7FPE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE1_ECTSI) HSP 1 Score: 259 bits (661), Expect = 1.090e-83 Identity = 141/232 (60.78%), Postives = 177/232 (76.29%), Query Frame = 1
Query: 7 SLALAFAVAGPAASAFCV--MALPPSVHVCTNTSCRKAGSRWTLDTFRAFAPAG-VEVIETGCQGRCGLGPNVMTRPPEEVYNGVSHCFDFQPTLRSAGATFFFVQISFGFPVSDALVAAFGHVSEGDVLYQRGLHAEALTCYSRCIDTMGAFKDNGNALSVAKMKQSSAMRMVAKDAGKKNS-----GSGEASAGLEVHEAEVSAREAIELWRANSGAWLHLCDVLVDAVR 678
+L +A + A PAA AFC M+ +VHVCTNTSCRKAGSRWT+DTFRAFAP G ++V+ETGCQGRCGLGPN++TRP EEVYNGV+ QP +A ++I FG PV+D LV AFGHVS+GDVL++RGL AEAL CY++CIDT GAF+ + NALSVAK+KQSSAMR++AK+ G+ +S GS A+A + + EAE SAREA+ELW A++ AWL+L DVLVD R
Sbjct: 19 ALFMAVSPAAPAAVAFCSSSMSTKGTVHVCTNTSCRKAGSRWTVDTFRAFAPPGDIKVLETGCQGRCGLGPNILTRPSEEVYNGVA-----QPATVAA-----IIEIDFGVPVADTLVGAFGHVSKGDVLFKRGLFAEALACYNQCIDTAGAFEGSTNALSVAKVKQSSAMRLLAKEGGRGSSRAAGTGSTAAAASVTLEEAEASAREAVELWPAHTAAWLNLADVLVDTGR 240
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: A0A836CAY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY5_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.720e-13 Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 1
Query: 73 PSVHVCTNTSCRKAGSRWTLDTFRAFAPAGVEVIETGCQGRCGLGPNVMTRPPEEVYNGVSHCFDFQPTLRSAGATFFFVQISFGFPVSDALVAAFGHVSEGDVLYQRGLHAEALT 420
P+V+VC + C+K GS T D FRAFAP GVEV E+GC G+CG GPN++ +Y GV ++P +A ++ G V AL+ A+ GD + G +A++LT
Sbjct: 6 PAVYVCVSKCCKKLGSPATHDLFRAFAPDGVEVEESGCHGQCGSGPNLVASGT--LYTGV-----YKPATAAA-----ILEKECGAAVPAALITAYKEKMRGDQDLRDGRYAKSLT 109
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: A0A7S2V0W4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0W4_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 7.010e-12 Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
Query: 76 SVHVCTNTSCRKAGSRWTLDTFRAFAPAGVEVIETGCQGRCGLGPNVMTRPPEEVYNGVSHCFDFQPTLRSAGATFFFVQISFGFPVSDALVAAFGHVSEGDVLYQRGLHAEALTCYSRCI 438
S+ +C N +CRK G+ T + F A P +++ TGCQG+CG GPNV P + Y GV QP +A ++I+ G V D +V + + D L ++ +AL YS+ +
Sbjct: 23 SISICNNRNCRKDGASETYEVFEAMTPPEMQISFTGCQGKCGSGPNVRVEPGAKDYAGVH-----QPATVAA-----ILEIALGVVVDDVVVERYTDKMKADKLLKQRQPKKALEMYSQAL 133
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: A0A835IWM3_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IWM3_9MAGN) HSP 1 Score: 65.5 bits (158), Expect = 3.160e-9 Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1
Query: 79 VHVCTNTSCRKAGSRWTLDTFRAFAPAGVEVIETGCQGRCGLGPNVMTRPPEEVYNGVSHC 261
+ VC NTSCRK GSR TLD + P + V GC GRCG GPN++ P + N HC
Sbjct: 31 IRVCVNTSCRKQGSRETLDILSSIVPPHISVTSCGCLGRCGAGPNLIVLPQAVLVN---HC 88
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: UPI0009C00CAB (uncharacterized protein LOC18437633 isoform X2 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0009C00CAB) HSP 1 Score: 63.2 bits (152), Expect = 1.900e-8 Identity = 30/61 (49.18%), Postives = 35/61 (57.38%), Query Frame = 1
Query: 79 VHVCTNTSCRKAGSRWTLDTFRAFAPAGVEVIETGCQGRCGLGPNVMTRPPEEVYNGVSHC 261
+ VC N SCRK GSR TL+ AP + V C GRCG GPN++ P EE VSHC
Sbjct: 46 IRVCLNKSCRKLGSRETLELMSDLAPPEISVKSCSCLGRCGSGPNLVLLPAEEF---VSHC 103
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: W1PQI6_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PQI6_AMBTC) HSP 1 Score: 63.2 bits (152), Expect = 2.370e-8 Identity = 30/61 (49.18%), Postives = 35/61 (57.38%), Query Frame = 1
Query: 79 VHVCTNTSCRKAGSRWTLDTFRAFAPAGVEVIETGCQGRCGLGPNVMTRPPEEVYNGVSHC 261
+ VC N SCRK GSR TL+ AP + V C GRCG GPN++ P EE VSHC
Sbjct: 46 IRVCLNKSCRKLGSRETLELMSDLAPPEISVKSCSCLGRCGSGPNLVLLPAEEF---VSHC 103
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: A0A7J6X3P1_THATH (Tetratricopeptide repeat (TPR)-containing protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6X3P1_THATH) HSP 1 Score: 62.8 bits (151), Expect = 3.400e-8 Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 79 VHVCTNTSCRKAGSRWTLDTFRAFAPAGVEVIETGCQGRCGLGPNVMTRPPEEVYNGVSHC 261
+ VC N +CRK GSR TLD + AP V V GC G+CG GPN++ P + V+ VSHC
Sbjct: 47 IRVCVNRTCRKQGSRETLDILSSLAPPHVSVTSCGCLGKCGSGPNLVFLP-QAVF--VSHC 104
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: A0A2G5CVZ4_AQUCA (Uncharacterized protein n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CVZ4_AQUCA) HSP 1 Score: 62.0 bits (149), Expect = 6.470e-8 Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 79 VHVCTNTSCRKAGSRWTLDTFRAFAPAGVEVIETGCQGRCGLGPNVMTRPPEEVYNGVSHC 261
+ VC N +CRK GSR TL+ + AP V VI GC G+CG GPN++ P + V+ V+HC
Sbjct: 49 IRVCVNKTCRKQGSRETLEILSSLAPPHVSVISCGCLGKCGSGPNLVFLP-QAVF--VNHC 106
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: A0A2G5CW13_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CW13_AQUCA) HSP 1 Score: 62.0 bits (149), Expect = 7.300e-8 Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 79 VHVCTNTSCRKAGSRWTLDTFRAFAPAGVEVIETGCQGRCGLGPNVMTRPPEEVYNGVSHC 261
+ VC N +CRK GSR TL+ + AP V VI GC G+CG GPN++ P + V+ V+HC
Sbjct: 49 IRVCVNKTCRKQGSRETLEILSSLAPPHVSVISCGCLGKCGSGPNLVFLP-QAVF--VNHC 106
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Match: A0A061S794_9CHLO (Tetratricopeptide repeat-containing protein isoform 3 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S794_9CHLO) HSP 1 Score: 59.3 bits (142), Expect = 5.280e-7 Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 76 SVHVCTNTSCRKAGSRWTLDTFRAFAPAGVEVIETGCQGRCGLGPNVMTRPPEEVYNGVS 255
+V VCTN +CRK G++ L + V+VIE+GC G+CG GPNV PP V VS
Sbjct: 43 TVRVCTNRTCRKQGAKQILRLTQDLCIENVKVIESGCMGKCGNGPNVGILPPGVVLGHVS 102 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6705.16227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig6705.16227.1 >prot_M-pyrifera_M_contig6705.16227.1 ID=prot_M-pyrifera_M_contig6705.16227.1|Name=mRNA_M-pyrifera_M_contig6705.16227.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=226bp LCSLALAFAVAGPAASAFCVMALPPSVHVCTNTSCRKAGSRWTLDTFRAFback to top mRNA from alignment at M-pyrifera_M_contig6705:7690..11757- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig6705.16227.1 ID=mRNA_M-pyrifera_M_contig6705.16227.1|Name=mRNA_M-pyrifera_M_contig6705.16227.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4068bp|location=Sequence derived from alignment at M-pyrifera_M_contig6705:7690..11757- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig6705:7690..11757- >mRNA_M-pyrifera_M_contig6705.16227.1 ID=mRNA_M-pyrifera_M_contig6705.16227.1|Name=mRNA_M-pyrifera_M_contig6705.16227.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1356bp|location=Sequence derived from alignment at M-pyrifera_M_contig6705:7690..11757- (Macrocystis pyrifera P11B4 male)back to top |