mRNA_M-pyrifera_M_contig67038.16225.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Match: I5CRN5_9BURK (Uncharacterized protein n=1 Tax=Paraburkholderia hospita BS001 TaxID=1171375 RepID=I5CRN5_9BURK) HSP 1 Score: 52.4 bits (124), Expect = 3.950e-7 Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1
Query: 1 SGEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLVWCR 141
S EWP E SFL LGL L+EA +LG EHGQ+AIV+ + QLV R
Sbjct: 96 SNEWPGEPSFLGLGLTLDEARKLGAEHGQNAIVWCGEDAIPQLVLLR 142
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Match: A0A2T5JNZ1_9PROT (Uncharacterized protein DUF3293 n=2 Tax=unclassified Nitrosospira TaxID=2609267 RepID=A0A2T5JNZ1_9PROT) HSP 1 Score: 51.6 bits (122), Expect = 8.630e-7 Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 1 SGEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLVWCR 141
SG WP E+SFLVLGL+LE + LG E GQ+AIV+ + +LVW +
Sbjct: 102 SGVWPVEKSFLVLGLDLETSQALGREFGQNAIVWIDSDAIPRLVWLQ 148
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Match: A0A1I4YDM0_9PROT (Uncharacterized protein n=2 Tax=Nitrosospira briensis TaxID=35799 RepID=A0A1I4YDM0_9PROT) HSP 1 Score: 50.4 bits (119), Expect = 2.290e-6 Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 1 SGEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLV 132
SGEWP ERSFL LGL+LE + LG E GQ+AIV+ + +L+
Sbjct: 99 SGEWPAERSFLALGLDLETSRALGREFGQNAIVWAGADAIPKLI 142
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Match: A0A286C5I1_9PROT (Uncharacterized protein n=1 Tax=Nitrosovibrio sp. Nv4 TaxID=1945880 RepID=A0A286C5I1_9PROT) HSP 1 Score: 49.7 bits (117), Expect = 4.520e-6 Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query: 1 SGEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLVWCR 141
SG WP E+SFLVLGL+LE + LG E GQ+A+V+ + QL+ R
Sbjct: 99 SGAWPPEKSFLVLGLDLETSRTLGREFGQNAVVWVGADAIPQLILLR 145
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Match: A0A1W6STF6_9PROT (Uncharacterized protein n=2 Tax=Nitrosospira lacus TaxID=1288494 RepID=A0A1W6STF6_9PROT) HSP 1 Score: 49.7 bits (117), Expect = 4.740e-6 Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query: 1 SGEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLVWCR 141
SG WP E+SFLVLGL+LE + LG E GQ+AIV+ + +L+ R
Sbjct: 102 SGAWPAEKSFLVLGLDLETSRALGKEFGQNAIVWAGADAIPRLILLR 148
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Match: A0A1I3AJY5_9PROT (Uncharacterized protein n=1 Tax=Nitrosospira sp. Nsp14 TaxID=1855333 RepID=A0A1I3AJY5_9PROT) HSP 1 Score: 48.5 bits (114), Expect = 1.260e-5 Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query: 1 SGEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLVWCR 141
+G WPEE+SFLVLGL+L+ A LG E Q+AIV+ + +LV R
Sbjct: 99 AGTWPEEKSFLVLGLDLDAARALGREFSQNAIVWAGNDAIPRLVLLR 145
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Match: UPI001A0588F4 (DUF3293 domain-containing protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI001A0588F4) HSP 1 Score: 47.8 bits (112), Expect = 2.130e-5 Identity = 19/45 (42.22%), Postives = 29/45 (64.44%), Query Frame = 1
Query: 1 SGEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLVW 135
SG W E+S L+LG++ +AS +G Q AIV+G ++P +L W
Sbjct: 90 SGSWTPEKSLLILGIDRSQASDIGRNFEQKAIVYGELDRPPELQW 134
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Match: UPI0008AC07B7 (Uncharacterized protein DUF3293 n=2 Tax=unclassified Nitrosovibrio TaxID=2624428 RepID=UPI0008AC07B7) HSP 1 Score: 48.1 bits (113), Expect = 2.390e-5 Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 1 SGEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLVWCR 141
SG WP E+SFLVLGL+LE + LG E GQ+A+V+ + L+ R
Sbjct: 122 SGAWPPEKSFLVLGLDLETSRTLGREFGQNAVVWAGADAIPLLILLR 168
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Match: A0A8I1PTV7_9PROT (DUF3293 domain-containing protein n=1 Tax=Nitrosospira sp. TaxID=38080 RepID=A0A8I1PTV7_9PROT) HSP 1 Score: 46.6 bits (109), Expect = 6.680e-5 Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1
Query: 4 GEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLVWCR 141
G WP E+SFLVLGL+LE A RLG E Q+A+V+ + +L+ R
Sbjct: 98 GTWPGEKSFLVLGLDLETAIRLGREFRQNALVWADEDAIPRLILLR 143 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67038.16225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig67038.16225.1 >prot_M-pyrifera_M_contig67038.16225.1 ID=prot_M-pyrifera_M_contig67038.16225.1|Name=mRNA_M-pyrifera_M_contig67038.16225.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp SGEWPEERSFLVLGLNLEEASRLGFEHGQHAIVFGRFNKPAQLVWCRE*back to top mRNA from alignment at M-pyrifera_M_contig67038:3..149+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig67038.16225.1 ID=mRNA_M-pyrifera_M_contig67038.16225.1|Name=mRNA_M-pyrifera_M_contig67038.16225.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig67038:3..149+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig67038:3..149+ >mRNA_M-pyrifera_M_contig67038.16225.1 ID=mRNA_M-pyrifera_M_contig67038.16225.1|Name=mRNA_M-pyrifera_M_contig67038.16225.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig67038:3..149+ (Macrocystis pyrifera P11B4 male)back to top |