mRNA_M-pyrifera_M_contig66998.16215.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66998.16215.1
Unique NamemRNA_M-pyrifera_M_contig66998.16215.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66998.16215.1 vs. uniprot
Match: A0A7S1CK60_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CK60_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.000e-14
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    4 FGEYRRDQVVTLVRMFDSIDADRSGTIDMEEFLNSPQLGSHISGSIAKSLFRALDKDKSGDITLFELLRAAFPDITPVQFREVTSFVRFFRRQE 285
            FG+Y +  ++    M+ +ID D SG+ID++EF  SP   S     +A S FR+LD D SG++TL ELL   FP  T  Q+R + +F+    R+E
Sbjct:   31 FGDYAKSDLLAFKVMYQAIDKDGSGSIDIDEFTTSPSFASSDMFHLANSTFRSLDADASGEVTLEELLPVQFPVATKAQYRNMAAFILATIRRE 124
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BLAST of mRNA_M-pyrifera_M_contig66998.16215.1 vs. uniprot
Match: A0A5A8CVW8_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CVW8_CAFRO)

HSP 1 Score: 66.2 bits (160), Expect = 1.410e-10
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    4 FGEYRRDQVVTLVRMFDSIDADRSGTIDMEEFL-NSPQLGSHISGSIAKSLFRALDKDKSGDITLFELLRAAFPDITPVQFREVTSFVRFFRRQE 285
            FG   R QV ++VR+F  +D D  G + +++FL NS   G+ ++    +SLFR LD D SG ++L ELLRAAFP  +  QFR +  F + F +++
Sbjct: 1755 FGPVSRSQVRSVVRLFLEMDKDGLGEVTVDKFLHNSVVEGTQLT-QFTRSLFRTLDTDGSGSVSLSELLRAAFPQPSAKQFRSLHVFGKKFHKEQ 1848
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BLAST of mRNA_M-pyrifera_M_contig66998.16215.1 vs. uniprot
Match: A0A3L6VN73_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VN73_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.980e-6
Identity = 25/73 (34.25%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 RFGEYRRDQVVTLVRMFDSIDADRSGTIDMEEFLNSPQLGSHISGSIAKSLFRALDKDKSGDITLFELLRAAF 219
            RFG Y   +V+ ++R+F S+D D SGT+   E +   Q    +  +   ++FR+LD D +G+++L +LL+  F
Sbjct:  152 RFGMYSIKEVMVIIRLFWSLDVDCSGTVSESELMGCQQYFEKLGITDMSTMFRSLDSDGTGEVSLGDLLKICF 224
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BLAST of mRNA_M-pyrifera_M_contig66998.16215.1 vs. uniprot
Match: A0A6A4YYZ2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YYZ2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.260e-6
Identity = 25/73 (34.25%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 RFGEYRRDQVVTLVRMFDSIDADRSGTIDMEEFLNSPQLGSHISGSIAKSLFRALDKDKSGDITLFELLRAAF 219
            RFG Y   +V+ ++R+F S+D D SGT+   E +   Q    +  +   ++FR+LD D +G+++L +LL+  F
Sbjct:  280 RFGMYSIKEVMVIIRLFWSLDVDCSGTVSESELMGCQQYFEKLGITDMSTMFRSLDSDGTGEVSLGDLLKICF 352
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BLAST of mRNA_M-pyrifera_M_contig66998.16215.1 vs. uniprot
Match: A0A397C5E4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C5E4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.390e-6
Identity = 25/73 (34.25%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 RFGEYRRDQVVTLVRMFDSIDADRSGTIDMEEFLNSPQLGSHISGSIAKSLFRALDKDKSGDITLFELLRAAF 219
            RFG Y   +V+ ++R+F S+D D SGT+   E +   Q    +  +   ++FR+LD D +G+++L +LL+  F
Sbjct:  419 RFGMYSIKEVMVIIRLFWSLDVDCSGTVSESELMGCQQYFEKLGITDMSTMFRSLDSDGTGEVSLGDLLKICF 491
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BLAST of mRNA_M-pyrifera_M_contig66998.16215.1 vs. uniprot
Match: W4H8X0_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8X0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.630e-6
Identity = 25/73 (34.25%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 RFGEYRRDQVVTLVRMFDSIDADRSGTIDMEEFLNSPQLGSHISGSIAKSLFRALDKDKSGDITLFELLRAAF 219
            RFG Y   +V+ ++R+F S+D D SGT+   E +   Q    +  +   ++FR+LD D +G+++L +LL+  F
Sbjct: 1239 RFGMYSIKEVMVIIRLFWSLDVDCSGTVSESELMGCQQYFEKLGITDMSTMFRSLDSDGTGEVSLGDLLKICF 1311
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BLAST of mRNA_M-pyrifera_M_contig66998.16215.1 vs. uniprot
Match: A0A1V9ZD18_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZD18_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.050e-5
Identity = 25/92 (27.17%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:    1 RFGEYRRDQVVTLVRMFDSIDADRSGTIDMEEFLNSPQLGSHISGSIAKSLFRALDKDKSGDITLFELLRAAFPDITPVQFREVTSFVRFFR 276
            RFG Y   +V+ ++R+F  +D D SG++  +E          +  +   ++F+ +D D+SG+++L ELL+  FP  +P    ++ +  +  R
Sbjct: 1311 RFGIYTTKEVMVIIRLFWMLDTDCSGSVTEDELDGCRNYFESMGYTDMATIFQTIDTDRSGEVSLAELLKICFPYASPTDIHDMLALEKLGR 1402
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BLAST of mRNA_M-pyrifera_M_contig66998.16215.1 vs. uniprot
Match: A0A5A8DYW5_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DYW5_CAFRO)

HSP 1 Score: 51.2 bits (121), Expect = 2.710e-5
Identity = 27/87 (31.03%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:    4 FGEYRRDQVVTLVRMFDSIDADRSGTIDMEEFLNSPQLGSHIS-GSIAKSLFRALDKDKSGDITLFELLRAAFPDITPVQFREVTSF 261
            FG Y+R  +    ++   ID D    I  +EFL  P + +  + G+  +S++R+LD+D SG++T+ +  RA FP       R++ +F
Sbjct: 2111 FGPYKRMDIAAFRKVIQRIDQDGDRVITRQEFLADPFVTNDDTLGARMESIYRSLDRDGSGNVTVVQFARAMFPMADAPTLRDILAF 2197
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66998.16215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7S1CK60_9STRA2.000e-1440.43Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8CVW8_CAFRO1.410e-1041.05Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A3L6VN73_9STRA4.980e-634.25Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A6A4YYZ2_9STRA5.260e-634.25Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397C5E4_9STRA5.390e-634.25Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4H8X0_9STRA5.630e-634.25Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A1V9ZD18_9STRA1.050e-527.17Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A5A8DYW5_CAFRO2.710e-531.03Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66998contigM-pyrifera_M_contig66998:975..1265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue7.2e-09
Seed eggNOG ortholog4792.ETI40748
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF hand
EggNOG OGs2SH28@2759,3Q9QT@4776,COG2319@1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.2351775-CDS-M-pyrifera_M_contig66998:974..12651622816560.2351775-CDS-M-pyrifera_M_contig66998:974..1265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66998 975..1265 -
1692278047.0156803-CDS-M-pyrifera_M_contig66998:974..12651692278047.0156803-CDS-M-pyrifera_M_contig66998:974..1265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66998 975..1265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66998.16215.1prot_M-pyrifera_M_contig66998.16215.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66998 975..1265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66998.16215.1

>prot_M-pyrifera_M_contig66998.16215.1 ID=prot_M-pyrifera_M_contig66998.16215.1|Name=mRNA_M-pyrifera_M_contig66998.16215.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
RFGEYRRDQVVTLVRMFDSIDADRSGTIDMEEFLNSPQLGSHISGSIAKS
LFRALDKDKSGDITLFELLRAAFPDITPVQFREVTSFVRFFRRQERN
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mRNA from alignment at M-pyrifera_M_contig66998:975..1265-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66998.16215.1 ID=mRNA_M-pyrifera_M_contig66998.16215.1|Name=mRNA_M-pyrifera_M_contig66998.16215.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig66998:975..1265- (Macrocystis pyrifera P11B4 male)
CGATTTGGAGAGTATCGCCGAGATCAAGTTGTCACACTTGTTCGAATGTT
TGATTCGATTGATGCTGATCGAAGTGGCACAATTGACATGGAAGAGTTCC
TCAACTCGCCACAACTCGGATCACACATTTCTGGATCCATCGCCAAGTCA
CTCTTTCGTGCATTGGACAAGGACAAATCAGGCGACATTACTCTCTTTGA
ACTCTTGCGAGCAGCATTCCCTGATATTACTCCAGTACAATTTCGCGAAG
TTACATCCTTTGTTCGCTTCTTCCGTCGCCAAGAACGAAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66998:975..1265-

>mRNA_M-pyrifera_M_contig66998.16215.1 ID=mRNA_M-pyrifera_M_contig66998.16215.1|Name=mRNA_M-pyrifera_M_contig66998.16215.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig66998:975..1265- (Macrocystis pyrifera P11B4 male)
CGATTTGGAGAGTATCGCCGAGATCAAGTTGTCACACTTGTTCGAATGTT
TGATTCGATTGATGCTGATCGAAGTGGCACAATTGACATGGAAGAGTTCC
TCAACTCGCCACAACTCGGATCACACATTTCTGGATCCATCGCCAAGTCA
CTCTTTCGTGCATTGGACAAGGACAAATCAGGCGACATTACTCTCTTTGA
ACTCTTGCGAGCAGCATTCCCTGATATTACTCCAGTACAATTTCGCGAAG
TTACATCCTTTGTTCGCTTCTTCCGTCGCCAAGAACGAAATCGATTTGGA
GAGTATCGCCGAGATCAAGTTGTCACACTTGTTCGAATGTTTGATTCGAT
TGATGCTGATCGAAGTGGCACAATTGACATGGAAGAGTTCCTCAACTCGC
CACAACTCGGATCACACATTTCTGGATCCATCGCCAAGTCACTCTTTCGT
GCATTGGACAAGGACAAATCAGGCGACATTACTCTCTTTGAACTCTTGCG
AGCAGCATTCCCTGATATTACTCCAGTACAATTTCGCGAAGTTACATCCT
TTGTTCGCTTCTTCCGTCGCCAAGAACGAAAT
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