mRNA_M-pyrifera_M_contig66969.16212.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66969.16212.1
Unique NamemRNA_M-pyrifera_M_contig66969.16212.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: A0A7S0JT87_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JT87_CAFRO)

HSP 1 Score: 140 bits (353), Expect = 5.770e-39
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   70 VAPEFSFVAPFTQYDADGERTIPDFTYGGDAVVSENYVRITPDRQNKRGWIWGRRALENNDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            V P  +F  PF  +D++G RT  DF +GG A + +NY R+TPDR +KRGW+W R A +  +E+++TLRFR+SGQGK LFGDG ALWVTQ+AYH  G LHG+TD FTG 
Sbjct:   41 VVPALTFSPPFETFDSEGARTAGDFMHGGAADIKKNYARLTPDRGSKRGWLWSRAATDM-EEFTMTLRFRVSGQGKRLFGDGFALWVTQDAYHKDGPLHGYTDTFTGF 147          
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: A0A5A8CKL6_CAFRO (L-type lectin-like domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKL6_CAFRO)

HSP 1 Score: 140 bits (353), Expect = 8.330e-37
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   70 VAPEFSFVAPFTQYDADGERTIPDFTYGGDAVVSENYVRITPDRQNKRGWIWGRRALENNDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            V P  +F  PF  +D++G RT  DF +GG A + +NY R+TPDR +KRGW+W R A +  +E+++TLRFR+SGQGK LFGDG ALWVTQ+AYH  G LHG+TD FTG 
Sbjct:   37 VVPALTFSPPFETFDSEGARTAGDFMHGGAADIKKNYARLTPDRGSKRGWLWSRAATDM-EEFTMTLRFRVSGQGKRLFGDGFALWVTQDAYHKDGPLHGYTDTFTGF 143          
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: A0A7S1CKE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKE3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.740e-30
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 1
Query:  148 YGGDAVVSENYVRITPDRQNKRGWIWGRRALENNDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            YG  AVV+ N++R+TPDRQ+ RGW+W   A+   D W+ T+RFR+SGQG+TLFGDGLA W TQ+AYH  G LHG++D++TG 
Sbjct:    2 YGASAVVNNNFIRLTPDRQSHRGWLWNVNAVAFPD-WTATVRFRVSGQGRTLFGDGLAFWFTQDAYHKDGPLHGYSDEYTGF 82          
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: A0A7R9U5N4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5N4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.170e-29
Identity = 56/106 (52.83%), Postives = 73/106 (68.87%), Query Frame = 1
Query:   79 EFSFVAPFTQYDADGERTI-PDFTYGGDAVVSENYVRITPDRQNKRGWIWGRRALENNDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            E SF APF+ +++DG R + P F   G AVV+EN+VR+TPDRQ+KRG +W R  +     +S TLRFRISG GK  FGDG+ALW+T N  +  G+LHG   KF G+
Sbjct:   25 ELSFAAPFSSFESDGSRRVSPHFRVYGHAVVNENFVRLTPDRQSKRGALWSRMEIATQS-FSTTLRFRISGSGKKFFGDGIALWITHNTRYNPGDLHGVNPKFVGV 129          
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: A0A7S0XEJ2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ2_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.530e-29
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   85 SFVAPFTQYDA-DGERTIPDFTYGGDAVVSENYVRITPDRQNKRGWIWGRRALENNDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            SF  PF   D+  G+R IP++  GG  V++ N++RITPDRQ+K+G +W R+A+ N    S   +FRISGQGK  FGDG+A+W+ QNAY+  G LHGF DKF G+
Sbjct:   31 SFEPPFENIDSLGGQRIIPNWRAGGTTVINSNFIRITPDRQSKKGALWSRKAI-NVPAMSSVFKFRISGQGKNFFGDGMAVWIVQNAYYTEGALHGFIDKFVGI 133          
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: A0A813CUN2_9DINO (LMAN2L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CUN2_9DINO)

HSP 1 Score: 118 bits (295), Expect = 6.940e-29
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 MIVVAGLLSCLATLGYAQQKGVMVAPEFSFVAPFTQYDADGERTIPDFTYGGDAVVSENYVRITPDRQNKRGWIWGRRALENNDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            M+++AGLL+  A     Q     +  + SF AP +++D DG R +P +  GG A   + +VR+TPDR +K G +W R AL N + W+  L+FRISG G+TLFGDGLALW T +     G LHG  + FTG 
Sbjct:    1 MLLIAGLLALCAVSAAGQD----IIEDLSFAAPLSEFDVDGTRLVPGYRKGGHAEAMKTFVRLTPDRADKAGSLWSRAAL-NKEVWTAELKFRISGAGRTLFGDGLALWYTTDTQFRPGRLHGHNEFFTGF 126          
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: A0A6G0XS96_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XS96_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.000e-28
Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   19 LLSCLATLGYAQQKGVMVAPEFSFVAPFTQYDADGERTIPD-FTYGGDAVVSENYVRITPDRQNKRGWIWGRRALE----NNDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            ++  LA L  A        PE SF  PF    A+G R I D +T+GG AVV++++VR+T DRQ+KRG+IW ++ L        E+S+ L FRISGQG+  FGDGLALWVT    H+ G+ HGF + ++G 
Sbjct:    4 IVKALAALAMAAAVWSAPVPELSFEKPFEDITAEGVRIISDEYTFGGHAVVNKHFVRLTTDRQSKRGYIWSKKTLGAAGLKRPEFSIVLTFRISGQGERWFGDGLALWVTTEPRHSDGDNHGFKENYSGF 133          
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: D8MBI8_BLAHO (L-type lectin-like domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MBI8_BLAHO)

HSP 1 Score: 112 bits (281), Expect = 1.770e-27
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   85 SFVAPFTQYDADGERTIPDFTYGGDAVVSENYVRITPDRQNKRGWIWGRRALENNDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            SF APF  Y   G R I  +T GGDA + E +VR+TPDRQ+K G+ W  + L N+++W  T++FRISGQG+TLFGDG+ ++ T    H AG +HG  DKF G 
Sbjct:   25 SFAAPFKNYGWAGNRKIKGWTCGGDASIKEYFVRLTPDRQSKSGFCWNDKPL-NSNKWLTTVKFRISGQGETLFGDGMTIFFTTQNVHTAGPMHGSNDKFIGF 126          
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: A0A7S2B8C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8C4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.830e-27
Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 1
Query:   79 EFSFVAPFTQYDADGERTIP-DFTYGGDAVVSENYVRITPDRQNKRGWIWGRRALENNDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            + SF  P+T  D  G R +  D+  GG A VS+++VR+TPDRQ+K+G +W R++L   D +S  L+FRISGQGK  FGDG+ALWV Q AY   G+LHG  ++FTG 
Sbjct:   45 QHSFEPPYTDVDPSGNRLLSKDWKNGGVASVSQSFVRLTPDRQSKKGAVWSRKSL-GTDTFSTILKFRISGQGKKFFGDGMALWVMQQAYFVEGDLHGSVERFTGF 149          
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Match: A0A024U5S7_9STRA (L-type lectin-like domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5S7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.930e-27
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   76 PEFSFVAPFTQYDADGERTIPD-FTYGGDAVVSENYVRITPDRQNKRGWIWGRRALEN----NDEWSLTLRFRISGQGKTLFGDGLALWVTQNAYHAAGNLHGFTDKFTGM 393
            P  SF  PF    +DG R + D FT+GG  VV++++VR+T DRQ+KRG++W +  L +      E+S+ L FRISGQG+  FGDGLALWVT    H+ G  HGF +K+TG+
Sbjct:   21 PSLSFEKPFEDITSDGVRIVSDDFTFGGHTVVNKHFVRLTTDRQSKRGFVWSKATLGSAGLTKQEFSIVLTFRISGQGERWFGDGLALWVTTEPRHSDGENHGFKEKYTGI 131          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66969.16212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0JT87_CAFRO5.770e-3957.41Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8CKL6_CAFRO8.330e-3757.41L-type lectin-like domain-containing protein n=1 T... [more]
A0A7S1CKE3_9STRA8.740e-3058.54Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7R9U5N4_9STRA2.170e-2952.83Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0XEJ2_9STRA5.530e-2951.92Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A813CUN2_9DINO6.940e-2944.27LMAN2L protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A6G0XS96_9STRA8.000e-2845.38L-type lectin-like domain-containing protein n=1 T... [more]
D8MBI8_BLAHO1.770e-2750.49L-type lectin-like domain-containing protein n=1 T... [more]
A0A7S2B8C4_9STRA2.830e-2750.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A024U5S7_9STRA2.930e-2748.65L-type lectin-like domain-containing protein n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66969contigM-pyrifera_M_contig66969:87..574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue9e-23
Seed eggNOG ortholog157072.XP_008869472.1
KEGG koko:K10080,ko:K10082
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030134,GO:0030135,GO:0030246,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791
EggNOG free text desc.carbohydrate binding
EggNOG OGsKOG3839@1,KOG3839@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091,ko04131
Exons2
Model size393
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.0375767-CDS-M-pyrifera_M_contig66969:86..2751622816560.0375767-CDS-M-pyrifera_M_contig66969:86..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66969 87..275 -
1692278046.8858109-CDS-M-pyrifera_M_contig66969:86..2751692278046.8858109-CDS-M-pyrifera_M_contig66969:86..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66969 87..275 -
1622816560.0492752-CDS-M-pyrifera_M_contig66969:370..5741622816560.0492752-CDS-M-pyrifera_M_contig66969:370..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66969 371..574 -
1692278046.8988597-CDS-M-pyrifera_M_contig66969:370..5741692278046.8988597-CDS-M-pyrifera_M_contig66969:370..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66969 371..574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66969.16212.1prot_M-pyrifera_M_contig66969.16212.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66969 87..574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66969.16212.1

>prot_M-pyrifera_M_contig66969.16212.1 ID=prot_M-pyrifera_M_contig66969.16212.1|Name=mRNA_M-pyrifera_M_contig66969.16212.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MIVVAGLLSCLATLGYAQQKGVMVAPEFSFVAPFTQYDADGERTIPDFTY
GGDAVVSENYVRITPDRQNKRGWIWGRRALENNDEWSLTLRFRISGQGKT
LFGDGLALWVTQNAYHAAGNLHGFTDKFTGM
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mRNA from alignment at M-pyrifera_M_contig66969:87..574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66969.16212.1 ID=mRNA_M-pyrifera_M_contig66969.16212.1|Name=mRNA_M-pyrifera_M_contig66969.16212.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=488bp|location=Sequence derived from alignment at M-pyrifera_M_contig66969:87..574- (Macrocystis pyrifera P11B4 male)
ATGATCGTTGTTGCGGGGTTGCTAAGTTGTCTTGCGACCCTTGGGTATGC CCAGCAAAAAGGTGTGATGGTAGCACCCGAGTTCTCCTTCGTCGCCCCTT TTACGCAATACGACGCTGATGGAGAACGCACTATCCCCGATTTCACGTAT GGTGGAGACGCGGTGGTATCTGAGAACTACGTTCGGATAACCCCTGATCG TCAGGTATGTGGAGTGTGGGGTTTGGTGGGAGAAGGAGGGGTCTGGAATG GGTTTGTTTCGAGTTTGGATTTGGTACATTCAACGTGGCATGCTTGCAGA ACAAGAGAGGCTGGATTTGGGGTCGTCGTGCACTTGAGAACAATGATGAG TGGTCATTGACACTGCGGTTTCGCATCAGTGGCCAAGGGAAGACGTTGTT TGGCGATGGGTTGGCCTTGTGGGTGACACAAAACGCGTATCACGCCGCTG GGAACTTGCATGGGTTCACCGACAAGTTTACCGGTATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66969:87..574-

>mRNA_M-pyrifera_M_contig66969.16212.1 ID=mRNA_M-pyrifera_M_contig66969.16212.1|Name=mRNA_M-pyrifera_M_contig66969.16212.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig66969:87..574- (Macrocystis pyrifera P11B4 male)
ATGATCGTTGTTGCGGGGTTGCTAAGTTGTCTTGCGACCCTTGGGTATGC
CCAGCAAAAAGGTGTGATGGTAGCACCCGAGTTCTCCTTCGTCGCCCCTT
TTACGCAATACGACGCTGATGGAGAACGCACTATCCCCGATTTCACGTAT
GGTGGAGACGCGGTGGTATCTGAGAACTACGTTCGGATAACCCCTGATCG
TCAGATGATCGTTGTTGCGGGGTTGCTAAGTTGTCTTGCGACCCTTGGGT
ATGCCCAGCAAAAAGGTGTGATGGTAGCACCCGAGTTCTCCTTCGTCGCC
CCTTTTACGCAATACGACGCTGATGGAGAACGCACTATCCCCGATTTCAC
GTATGGTGGAGACGCGGTGGTATCTGAGAACTACGTTCGGATAACCCCTG
ATCGTCAGAACAAGAGAGGCTGGATTTGGGGTCGTCGTGCACTTGAGAAC
AATGATGAGTGGTCATTGACACTGCGGTTTCGCATCAGTGGCCAAGGGAA
GACGTTGTTTGGCGATGGGTTGGCCTTGTGGGTGACACAAAACGCGTATC
ACGCCGCTGGGAACTTGCATGGGTTCACCGACAAGTTTACCGGTATGAAC
AAGAGAGGCTGGATTTGGGGTCGTCGTGCACTTGAGAACAATGATGAGTG
GTCATTGACACTGCGGTTTCGCATCAGTGGCCAAGGGAAGACGTTGTTTG
GCGATGGGTTGGCCTTGTGGGTGACACAAAACGCGTATCACGCCGCTGGG
AACTTGCATGGGTTCACCGACAAGTTTACCGGTATG
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