mRNA_M-pyrifera_M_contig6692.16199.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6692.16199.1
Unique NamemRNA_M-pyrifera_M_contig6692.16199.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6692.16199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6692contigM-pyrifera_M_contig6692:3767..4245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.503377-CDS-M-pyrifera_M_contig6692:3766..40781622816559.503377-CDS-M-pyrifera_M_contig6692:3766..4078Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6692 3767..4078 +
1692278046.6042047-CDS-M-pyrifera_M_contig6692:3766..40781692278046.6042047-CDS-M-pyrifera_M_contig6692:3766..4078Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6692 3767..4078 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.5187125-UTR-M-pyrifera_M_contig6692:4078..42451622816559.5187125-UTR-M-pyrifera_M_contig6692:4078..4245Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6692 4079..4245 +
1692278046.613581-UTR-M-pyrifera_M_contig6692:4078..42451692278046.613581-UTR-M-pyrifera_M_contig6692:4078..4245Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6692 4079..4245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6692.16199.1prot_M-pyrifera_M_contig6692.16199.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6692 3767..4078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6692.16199.1

>prot_M-pyrifera_M_contig6692.16199.1 ID=prot_M-pyrifera_M_contig6692.16199.1|Name=mRNA_M-pyrifera_M_contig6692.16199.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MISTVCGSVGYQAFHIKTGGAGSPVRTSERRVIVGRFFLRVDSNRSTQPN
QCGHGYFILATLTDHQLCNTFADAGTVNNNNDTHHKLIPGSCHKRKNNSS
TPP*
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mRNA from alignment at M-pyrifera_M_contig6692:3767..4245+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6692.16199.1 ID=mRNA_M-pyrifera_M_contig6692.16199.1|Name=mRNA_M-pyrifera_M_contig6692.16199.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=479bp|location=Sequence derived from alignment at M-pyrifera_M_contig6692:3767..4245+ (Macrocystis pyrifera P11B4 male)
ATGATCTCTACGGTTTGTGGATCCGTTGGATATCAGGCCTTCCATATAAA
AACCGGCGGGGCAGGGTCTCCGGTTCGTACTAGCGAGCGTCGCGTTATTG
TGGGTCGATTTTTCCTGCGCGTTGACTCGAATCGTTCGACGCAACCAAAT
CAATGCGGCCACGGATATTTCATCCTTGCAACACTGACCGACCACCAACT
CTGTAACACGTTTGCGGACGCCGGGACAGTCAACAACAACAACGACACCC
ACCACAAACTGATACCTGGAAGTTGCCACAAAAGGAAAAACAATAGTTCA
ACTCCGCCGTGACAAGTCCAGCTAAACGAACCCTGTGGTCTGATTTACGG
AGACACTGGCAGCAAGCTGTGTGTTGTGCACATTTTATTGACCCGATGAT
ACATTCAAGTATCATTGGCTCCGACGTTCCTTCGGTGGCTCGACTCGCAA
AGCCCCATCTACCTGCCTGGTATCCCAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6692:3767..4245+

>mRNA_M-pyrifera_M_contig6692.16199.1 ID=mRNA_M-pyrifera_M_contig6692.16199.1|Name=mRNA_M-pyrifera_M_contig6692.16199.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig6692:3767..4245+ (Macrocystis pyrifera P11B4 male)
ATGATCTCTACGGTTTGTGGATCCGTTGGATATCAGGCCTTCCATATAAA
AACCGGCGGGGCAGGGTCTCCGGTTCGTACTAGCGAGCGTCGCGTTATTG
TGGGTCGATTTTTCCTGCGCGTTGACTCGAATCGTTCGACGCAACCAAAT
CAATGCGGCCACGGATATTTCATCCTTGCAACACTGACCGACCACCAACT
CTGTAACACGTTTGCGGACGCCGGGACAGTCAACAACAACAACGACACCC
ACCACAAACTGATACCTGGAAGTTGCCACAAAAGGAAAAACAATAGTTCA
ACTCCGCCGTGAATGATCTCTACGGTTTGTGGATCCGTTGGATATCAGGC
CTTCCATATAAAAACCGGCGGGGCAGGGTCTCCGGTTCGTACTAGCGAGC
GTCGCGTTATTGTGGGTCGATTTTTCCTGCGCGTTGACTCGAATCGTTCG
ACGCAACCAAATCAATGCGGCCACGGATATTTCATCCTTGCAACACTGAC
CGACCACCAACTCTGTAACACGTTTGCGGACGCCGGGACAGTCAACAACA
ACAACGACACCCACCACAAACTGATACCTGGAAGTTGCCACAAAAGGAAA
AACAATAGTTCAACTCCGCCGTGA
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