mRNA_M-pyrifera_M_contig669.16193.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig669.16193.1
Unique NamemRNA_M-pyrifera_M_contig669.16193.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig669.16193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig669contigM-pyrifera_M_contig669:13236..13626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.2239418-UTR-M-pyrifera_M_contig669:13235..132601622816559.2239418-UTR-M-pyrifera_M_contig669:13235..13260Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig669 13236..13260 +
1692278046.4609113-UTR-M-pyrifera_M_contig669:13235..132601692278046.4609113-UTR-M-pyrifera_M_contig669:13235..13260Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig669 13236..13260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.2412026-CDS-M-pyrifera_M_contig669:13260..136261622816559.2412026-CDS-M-pyrifera_M_contig669:13260..13626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig669 13261..13626 +
1692278046.4717553-CDS-M-pyrifera_M_contig669:13260..136261692278046.4717553-CDS-M-pyrifera_M_contig669:13260..13626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig669 13261..13626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig669.16193.1prot_M-pyrifera_M_contig669.16193.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig669 13261..13626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig669.16193.1

>prot_M-pyrifera_M_contig669.16193.1 ID=prot_M-pyrifera_M_contig669.16193.1|Name=mRNA_M-pyrifera_M_contig669.16193.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MLLPLCCSRSAATYCIVKNKRYDQQRVGKKASSYAYAARETESDRIFCFA
YCFFPSPDTMIHWARRGSVRFGSLWFDSIWFDSIPLHLIRFDPNWFGPGR
PKKSNCSTPLLAPTQTREVPPR
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mRNA from alignment at M-pyrifera_M_contig669:13236..13626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig669.16193.1 ID=mRNA_M-pyrifera_M_contig669.16193.1|Name=mRNA_M-pyrifera_M_contig669.16193.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=391bp|location=Sequence derived from alignment at M-pyrifera_M_contig669:13236..13626+ (Macrocystis pyrifera P11B4 male)
TGTGTGGTTCTTTTCTCCTCTCCTCATGCTGTTGCCCCTCTGCTGCTCTC
GCTCTGCTGCTACCTACTGTATTGTTAAAAATAAAAGATACGATCAACAA
CGTGTCGGAAAAAAAGCCTCGAGCTACGCGTACGCCGCCCGAGAGACTGA
AAGCGATCGTATTTTTTGTTTCGCATATTGTTTTTTCCCCTCCCCCGACA
CAATGATACACTGGGCGCGGCGCGGCTCGGTTCGGTTCGGTTCGCTTTGG
TTCGATTCGATTTGGTTCGATTCGATTCCACTCCATCTGATTCGATTCGA
TCCAAATTGGTTCGGACCGGGTCGTCCCAAGAAGAGCAACTGCTCCACCC
CTCTCCTCGCCCCGACCCAAACACGAGAGGTACCCCCTCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig669:13236..13626+

>mRNA_M-pyrifera_M_contig669.16193.1 ID=mRNA_M-pyrifera_M_contig669.16193.1|Name=mRNA_M-pyrifera_M_contig669.16193.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig669:13236..13626+ (Macrocystis pyrifera P11B4 male)
ATGCTGTTGCCCCTCTGCTGCTCTCGCTCTGCTGCTACCTACTGTATTGT
TAAAAATAAAAGATACGATCAACAACGTGTCGGAAAAAAAGCCTCGAGCT
ACGCGTACGCCGCCCGAGAGACTGAAAGCGATCGTATTTTTTGTTTCGCA
TATTGTTTTTTCCCCTCCCCCGACACAATGATACACTGGGCGCGGCGCGG
CTCGGTTCGGTTCGGTTCGCTTTGGTTCGATTCGATTTGGTTCGATTCGA
TTCCACTCCATCTGATTCGATTCGATCCAAATTGGTTCGGACCGGGTCGT
CCCAAGAAGAGCAACTGCTCCACCCCTCTCCTCGCCCCGACCCAAACACG
AGAGGTACCCCCTCGCATGCTGTTGCCCCTCTGCTGCTCTCGCTCTGCTG
CTACCTACTGTATTGTTAAAAATAAAAGATACGATCAACAACGTGTCGGA
AAAAAAGCCTCGAGCTACGCGTACGCCGCCCGAGAGACTGAAAGCGATCG
TATTTTTTGTTTCGCATATTGTTTTTTCCCCTCCCCCGACACAATGATAC
ACTGGGCGCGGCGCGGCTCGGTTCGGTTCGGTTCGCTTTGGTTCGATTCG
ATTTGGTTCGATTCGATTCCACTCCATCTGATTCGATTCGATCCAAATTG
GTTCGGACCGGGTCGTCCCAAGAAGAGCAACTGCTCCACCCCTCTCCTCG
CCCCGACCCAAACACGAGAGGTACCCCCTCGC
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