mRNA_M-pyrifera_M_contig66899.16192.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66899.16192.1
Unique NamemRNA_M-pyrifera_M_contig66899.16192.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: A0A1B2FKN8_9ROSA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Hagenia abyssinica TaxID=57921 RepID=A0A1B2FKN8_9ROSA)

HSP 1 Score: 194 bits (492), Expect = 1.190e-59
Identity = 105/130 (80.77%), Postives = 112/130 (86.15%), Query Frame = 1 
Query:    1 KKVNSIIEPYAMRKRRCLYGCSIISFFIIILYL--FTFHYAR*NKHLL----CYIIRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVAT 372
            KKVNSI EPYAMRKR CLYGCSI+ F +I LYL  F FH+AR  KH L     YIIRVMIHQPA+SFYEAQTGEF+LEAEELLKLRET+TRVYAQRTGKPLWVVSED+ERDVFMSA EAQ HGIVDLVAT
Sbjct:  155 KKVNSIREPYAMRKR-CLYGCSILPF-LIFLYLPTFHFHHAREKKHFLGYIRYYIIRVMIHQPASSFYEAQTGEFVLEAEELLKLRETITRVYAQRTGKPLWVVSEDVERDVFMSATEAQVHGIVDLVAT 282
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BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: A0A2P6P188_ROSCH (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P188_ROSCH)

HSP 1 Score: 157 bits (398), Expect = 1.100e-47
Identity = 83/101 (82.18%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:   79 FIIILYLFTF--HYAR*NKHLLCYIIRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVATE 375
            F+IILYL TF     R   +++ YIIRVMIHQPA+SFYEAQTGEF+LEAEELLKLRET+TRVYAQRTGKPLWVVSEDMERDVFMSA EAQAHGIVDLVATE
Sbjct:   10 FLIILYLLTFIMRDRRNIFYVISYIIRVMIHQPASSFYEAQTGEFVLEAEELLKLRETITRVYAQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVATE 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: A0A5N5J7X5_9ROSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5J7X5_9ROSI)

HSP 1 Score: 156 bits (394), Expect = 1.990e-46
Identity = 84/115 (73.04%), Postives = 88/115 (76.52%), Query Frame = 1 
Query:   25 PYAMRKRRCLYGCSIISFFIIILYLFTFHYAR*NKHLLCYIIRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVA 369
            PYAMRK+ CLYGCSI+                    LL YIIRVMIHQP A+FYEAQ GEF+LEAEELLKLRE LTRVYAQRTGKPLWVVSEDMERDVFMSA EAQ HGIVDLVA
Sbjct:   63 PYAMRKQ-CLYGCSIL--------------------LLSYIIRVMIHQPIAAFYEAQIGEFVLEAEELLKLREILTRVYAQRTGKPLWVVSEDMERDVFMSAAEAQVHGIVDLVA 156
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BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: UPI0009EDABC5 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Paenarthrobacter nicotinovorans TaxID=29320 RepID=UPI0009EDABC5)

HSP 1 Score: 153 bits (386), Expect = 7.170e-46
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:   76 FFIIILYLFTFHYAR*NKHLLCYIIRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVATE 375
            F  ++ ++ + H    ++  +CYIIRVMIHQPA+SFYEAQTGEFILEAEELLKLRET+TRVY QRTGKPLWVVSEDMERDVFMSA EAQAHGIVDLVA E
Sbjct:   10 FLFLLFFISSPHLIMRDRGTICYIIRVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAIE 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: A0A835IX64_9MAGN (ATP-dependent Clp protease proteolytic subunit n=69 Tax=Mesangiospermae TaxID=1437183 RepID=A0A835IX64_9MAGN)

HSP 1 Score: 153 bits (387), Expect = 4.240e-45
Identity = 81/106 (76.42%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:   64 SIISFFI-IILYLF-TFHYAR*NKHLLCYIIRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVATE 375
            + I FF+ +ILYLF +    R   H LCYIIRVMIHQPA+S+YEAQTGEF+LEAEELL+LRE LTRVY QRTG PLWVVSEDMERDVFMSA EAQAHGIVDLVA E
Sbjct:    7 NYIFFFLRVILYLFPSSDRTRLRNHSLCYIIRVMIHQPASSYYEAQTGEFVLEAEELLRLREILTRVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE 112
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BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: A0A6J5UKQ1_PRUAR (Uncharacterized protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5UKQ1_PRUAR)

HSP 1 Score: 149 bits (375), Expect = 1.330e-44
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:  148 IRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVATE 375
            +RVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERD FMSAIEAQAHGIVDLVATE
Sbjct:    3 VRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDAFMSAIEAQAHGIVDLVATE 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: A0A5J5VUL4_GOSBA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Gossypium TaxID=3633 RepID=A0A5J5VUL4_GOSBA)

HSP 1 Score: 149 bits (377), Expect = 1.400e-44
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:  133 LLCYIIRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVATE 375
            LLCYIIRVMIHQP +SFYEAQTGEFILEAEELLKLRE+LTRVY QRTGKPLWVVSEDMERDVFMSA EAQAHGIVDLVA +
Sbjct:   23 LLCYIIRVMIHQPTSSFYEAQTGEFILEAEELLKLRESLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVK 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: A0A8K1HKV9_9ERIC (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=5 Tax=asterids TaxID=71274 RepID=A0A8K1HKV9_9ERIC)

HSP 1 Score: 152 bits (384), Expect = 2.330e-44
Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:   94 YLFTFHYAR*NKHLLCYIIRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVATE 375
            +LFT  Y    + LLCYIIRVMIHQPA+SFYEAQTGEFILEAEELLKLRETLTRVY QRTGKPLWVVSEDMERDVFMSA EAQA+GIVDLVA +
Sbjct:  108 FLFTSSYEI-EEPLLCYIIRVMIHQPASSFYEAQTGEFILEAEELLKLRETLTRVYVQRTGKPLWVVSEDMERDVFMSATEAQAYGIVDLVAVQ 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: A0A3P6DNQ5_BRACM (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6DNQ5_BRACM)

HSP 1 Score: 150 bits (378), Expect = 3.090e-44
Identity = 82/122 (67.21%), Postives = 92/122 (75.41%), Query Frame = 1 
Query:    1 KKVNSIIEPYAMRKRRCLYGCSIISFFIIILYLFTFHYAR*NKHLLCYIIRVMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLV 366
            +K  SI+EPYA  K++   G S  S F +   +        N+    YIIRVMIHQPA+SFYEAQTGE ILEAEELLKLRET+TRVY QRTGKP+WVVSEDMERDVFMSA EAQAHGIVDLV
Sbjct:   26 QKRKSILEPYATHKKK-KNGYSNFSVFFLSRLILR------NRKKKAYIIRVMIHQPASSFYEAQTGEVILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSATEAQAHGIVDLV 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Match: A0A5H2XTE6_PRUDU (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XTE6_PRUDU)

HSP 1 Score: 147 bits (371), Expect = 1.610e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:  154 VMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVATE 375
            VMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVATE
Sbjct:   41 VMIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDMERDVFMSAIEAQAHGIVDLVATE 114
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66899.16192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B2FKN8_9ROSA1.190e-5980.77ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A2P6P188_ROSCH1.100e-4782.18ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A5N5J7X5_9ROSI1.990e-4673.04ATP-dependent Clp protease proteolytic subunit n=1... [more]
UPI0009EDABC57.170e-4676.00ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835IX64_9MAGN4.240e-4576.42ATP-dependent Clp protease proteolytic subunit n=6... [more]
A0A6J5UKQ1_PRUAR1.330e-4497.37Uncharacterized protein n=1 Tax=Prunus armeniaca T... [more]
A0A5J5VUL4_GOSBA1.400e-4491.36ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A8K1HKV9_9ERIC2.330e-4484.04Acetyl-coenzyme A carboxylase carboxyl transferase... [more]
A0A3P6DNQ5_BRACM3.090e-4467.21ATP-dependent Clp protease proteolytic subunit (Fr... [more]
A0A5H2XTE6_PRUDU1.610e-43100.00ATP-dependent Clp protease proteolytic subunit (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66899contigM-pyrifera_M_contig66899:627..1004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score137.5
Seed ortholog evalue2.5e-30
Seed eggNOG ortholog59689.fgenesh1_pm.C_scaffold_2000590
Preferred nameclpP
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATP-dependent Clp protease proteolytic subunit
EggNOG OGs37U4N@33090,3GICU@35493,COG0740@1,KOG0840@2759
EC3.4.21.92
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size378
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.176405-CDS-M-pyrifera_M_contig66899:626..8481622816559.176405-CDS-M-pyrifera_M_contig66899:626..848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66899 627..848 -
1692278046.4362013-CDS-M-pyrifera_M_contig66899:626..8481692278046.4362013-CDS-M-pyrifera_M_contig66899:626..848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66899 627..848 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.1880825-UTR-M-pyrifera_M_contig66899:848..10041622816559.1880825-UTR-M-pyrifera_M_contig66899:848..1004Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66899 849..1004 -
1692278046.4500012-UTR-M-pyrifera_M_contig66899:848..10041692278046.4500012-UTR-M-pyrifera_M_contig66899:848..1004Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66899 849..1004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66899.16192.1prot_M-pyrifera_M_contig66899.16192.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66899 627..848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66899.16192.1

>prot_M-pyrifera_M_contig66899.16192.1 ID=prot_M-pyrifera_M_contig66899.16192.1|Name=mRNA_M-pyrifera_M_contig66899.16192.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MIHQPAASFYEAQTGEFILEAEELLKLRETLTRVYAQRTGKPLWVVSEDM
ERDVFMSAIEAQAHGIVDLVATE*
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mRNA from alignment at M-pyrifera_M_contig66899:627..1004-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66899.16192.1 ID=mRNA_M-pyrifera_M_contig66899.16192.1|Name=mRNA_M-pyrifera_M_contig66899.16192.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig66899:627..1004- (Macrocystis pyrifera P11B4 male)
AAAAAAGTTAATTCCATTATAGAGCCGTATGCAATGCGCAAAAGAAGATG
CCTGTACGGTTGTTCAATTATATCTTTTTTTATTATTATTCTTTATCTCT
TCACCTTTCATTATGCGAGATAGAATAAACATTTATTATGTTATATCATC
AGGGTAATGATCCACCAACCTGCTGCCTCTTTTTATGAGGCACAGACGGG
AGAATTTATCTTGGAAGCGGAAGAACTACTGAAGCTGCGCGAAACCCTCA
CAAGGGTTTATGCACAAAGGACAGGCAAACCCTTATGGGTTGTATCCGAA
GACATGGAAAGAGATGTTTTTATGTCAGCAATAGAAGCCCAAGCTCATGG
AATTGTTGATCTTGTAGCGACTGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66899:627..1004-

>mRNA_M-pyrifera_M_contig66899.16192.1 ID=mRNA_M-pyrifera_M_contig66899.16192.1|Name=mRNA_M-pyrifera_M_contig66899.16192.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig66899:627..1004- (Macrocystis pyrifera P11B4 male)
ATGATCCACCAACCTGCTGCCTCTTTTTATGAGGCACAGACGGGAGAATT
TATCTTGGAAGCGGAAGAACTACTGAAGCTGCGCGAAACCCTCACAAGGG
TTTATGCACAAAGGACAGGCAAACCCTTATGGGTTGTATCCGAAGACATG
GAAAGAGATGTTTTTATGTCAGCAATAGAAGCCCAAGCTCATGGAATTGT
TGATCTTGTAGCGACTGAATAAATGATCCACCAACCTGCTGCCTCTTTTT
ATGAGGCACAGACGGGAGAATTTATCTTGGAAGCGGAAGAACTACTGAAG
CTGCGCGAAACCCTCACAAGGGTTTATGCACAAAGGACAGGCAAACCCTT
ATGGGTTGTATCCGAAGACATGGAAAGAGATGTTTTTATGTCAGCAATAG
AAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGACTGAATAA
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