mRNA_M-pyrifera_M_contig66843.16184.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66843.16184.1
Unique NamemRNA_M-pyrifera_M_contig66843.16184.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: A0A2R5GUB5_9STRA (Cholesterol 7-desaturase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUB5_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.890e-34
Identity = 62/125 (49.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   10 TRLASYTQGYPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDIDGNVACVPYAPRASPP-VKLRKWPSIQYLDQV-LFFHDRDE 378
            T+   +   YPNGWFR+C++SD+  G VKS   LG   VAFR E G + V DA+CPHLGAHLG GGTV    L CPFH+W FD +G V  +PY   A P   K R WP  ++L  V ++FH   E
Sbjct:   58 TKRKMFPPPYPNGWFRICASSDVDAGAVKSISALGREFVAFRGEDGKVGVLDAFCPHLGAHLGQGGTVKNGLLTCPFHEWAFDTNGKVQDIPYCRTAVPQRAKTRAWPVREFLGMVFIWFHAEPE 182          
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: A0A812TRJ3_9DINO (Cholesterol 7-desaturase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TRJ3_9DINO)

HSP 1 Score: 132 bits (332), Expect = 2.000e-33
Identity = 56/124 (45.16%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    4 ERTRLASYTQGYPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDIDGNVACVPYAPRASPPVKLRKWPSIQYLDQVLFFHDRD 375
            ER RL++Y + +P GW++LC++ +L  G+V+    +GL L  FR ESGA++  DAYCPHLGA++ +GG V G+ L+CPFH+W+FD  G VA +PY+  ++P     ++P+++Y   VL F+D D
Sbjct:  279 ERERLSTYVKQFPTGWYKLCNSEELVAGQVEYVRAVGLHLALFRGESGAVSALDAYCPHLGANMAIGGKVHGDCLECPFHKWQFDEAGAVASIPYS-TSTPTKGAVRYPTMEYCGMVLVFYDAD 401          
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: A0A523K2X6_9DELT (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523K2X6_9DELT)

HSP 1 Score: 126 bits (316), Expect = 2.360e-32
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   37 YPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDIDGNVACVPYAPRASPPVKLRKWPSIQYLDQVLFFHD 369
            YP GWFR+   S++  GEVK+ ++LG   VA+R ESGA+AV + +CPHLGAHLG GG V GE ++CPFH W+FD+ G  + +PYA R  P  KL     ++    V+ +HD
Sbjct:   78 YPRGWFRVAYASEIEPGEVKTLKLLGQEFVAYRTESGAVAVVEPHCPHLGAHLGYGGKVVGESIRCPFHHWEFDLTGTCSKIPYAKRIPPMAKLAAKHVVEVNGIVMVWHD 188          
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: UPI00188959E4 (cholesterol 7-desaturase-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI00188959E4)

HSP 1 Score: 125 bits (313), Expect = 1.290e-31
Identity = 57/114 (50.00%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   37 YPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDI-DGNVACVPYAPRASPPVKLRKWPSIQYLDQVLFFHDRD 375
            YPNGWF +  + +L+  +VK  +VLGL LVAFR E G + V DAYCPHLGAHLGV G V GE ++CPFH W+FD  DG  A VPY+ +    +K+R W + + L  V  ++  D
Sbjct:   82 YPNGWFPIIESQELKVKQVKRVDVLGLELVAFRTEDGVVHVMDAYCPHLGAHLGVMGRVVGECIECPFHGWRFDAKDGVCAHVPYSAKVPDFIKIRTWTTAELLGNVFLWYHAD 195          
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: A0A847F627_9DELT (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Sandaracinaceae bacterium TaxID=2510337 RepID=A0A847F627_9DELT)

HSP 1 Score: 123 bits (308), Expect = 1.430e-31
Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:   16 LASYTQGYPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDIDGNVACVPYAPRASPPVKLRKWPSIQYLDQVLFFHDRD 375
            LAS+  G+P GWF +  + +L+ G+VK     G  LV FR ESG  A+ DAYCPHLGAHLG GG + GE ++CPFH W+FD +G+   VPYA       K+  WP  +    +  +HD D
Sbjct:    9 LASFP-GFPRGWFVIQFSDELKPGDVKPLRYFGKDLVLFRTESGRPAILDAYCPHLGAHLGYGGKIKGESIECPFHAWRFDCEGSCVDVPYAKMIPRKAKIATWPIEEKNGMIYVWHDTD 127          
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: A0A0D2UG78_CAPO3 (Cholesterol 7-desaturase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UG78_CAPO3)

HSP 1 Score: 125 bits (315), Expect = 1.610e-31
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    7 RTRLASYTQGYPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDIDGNVACVPYAPRASPPVKLRKWPSIQYLDQVLFFHDRD 375
            R +  +    +PNGW+RLC + DL+  +VK+ + LG   V FR E   ++V DAYCPHLGA+LG+GG V G E++CPFH W F+ DG    +PYA +     K RKW S++    VL + D +
Sbjct:  145 RRKRGNLPPPFPNGWYRLCDSRDLKVKDVKNIDALGQHFVVFRGEDKRVSVLDAYCPHLGANLGIGGKVKGNEIECPFHGWTFNHDGKCTNIPYATKVPEFAKTRKWTSLETNSHVLVWFDAE 267          
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: A0A1X0HFY7_9MYCO (Rieske-type oxygenase n=2 Tax=Mycolicibacterium moriokaense TaxID=39691 RepID=A0A1X0HFY7_9MYCO)

HSP 1 Score: 122 bits (307), Expect = 1.940e-31
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   31 QGYPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDIDGNVACVPYAPRASPPVKLRKWPSIQYLDQVLFFHDRD 375
            Q +P+GWF++  ++D   GEV+S    G  LV  R ESG  +VFDAYCPHLGAH+G+GG + GE L CPFH W+FD DG    VPY+ + S   +LR W   +    +L +HD D
Sbjct:    8 QSFPSGWFQIGWSADFAPGEVRSARYFGKDLVIARTESGTASVFDAYCPHLGAHIGLGGKIIGENLACPFHGWQFDSDGRNVLVPYSTKVSK-CRLRSWAVAEVSGLMLMWHDPD 121          
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: A0A2D6BI17_9DELT (Iron-sulfur cluster-binding protein, Rieske family n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6BI17_9DELT)

HSP 1 Score: 122 bits (307), Expect = 2.430e-31
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   37 YPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDIDGNVACVPYAPRASPPVKLRKWPSIQYLDQVLFFHDRD 375
            + NGWFR+  + DL+ GE+K     G  LV FR E G+  +FDA+CPH+GAHLG G  V GE L+CPFH W+FD  G  + +PYA R  P  ++  +P ++    +L +HDRD
Sbjct:   38 FANGWFRVAFSDDLQPGELKPLRYFGKELVLFRLEGGSAHLFDAHCPHMGAHLGYGAVVTGEALRCPFHHWEFDGAGKCSKIPYAKRIPPKAEIGTYPLVEKNGGILMWHDRD 150          
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: UPI001892D46F (cholesterol 7-desaturase-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001892D46F)

HSP 1 Score: 122 bits (307), Expect = 6.770e-31
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   37 YPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDI-DGNVACVPYAPRASPPVKLRKWPSIQYLDQVLFFHDRD 375
            YPNGWF +  + +L+  +VK  +VLGL L+A R E G   V DAYCPHLGAHLGV G V GE ++CPFH W+FD  DG    VPY+ +    VK++ W +++ L  V  +H  D
Sbjct:   58 YPNGWFPIIESQELKVKQVKRVDVLGLELIALRTEDGVAHVLDAYCPHLGAHLGVMGRVVGECIECPFHGWRFDAKDGACTHVPYSAKVPDFVKIKTWTTVELLGNVFLWHHAD 171          
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Match: A0A3Q3AW42_KRYMA (Cholesterol 7-desaturase n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3AW42_KRYMA)

HSP 1 Score: 123 bits (308), Expect = 7.580e-31
Identity = 58/128 (45.31%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 RERTRLASYTQGYPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGAIAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKF-DIDGNVACVPYAPRASPPVKLRKWPSIQYLDQVLFFHDRDEA 381
            R R RL      YPNGW+R+  + +LR  EVK   VLG  L  FR   G + V DAYCPHLGA++ VGG V G  ++CPFH W+F   DG  A +PY  +     K+R+WPS +   Q+L +   DEA
Sbjct:   77 RRRRRLGELPPVYPNGWYRVLDSPNLRREEVKHVSVLGEQLAVFRGRDGTVYVLDAYCPHLGANMAVGGRVKGNCIECPFHGWQFRGKDGKCANIPYTEKVPKVAKVRRWPSCEVNQQILVWFHCDEA 204          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66843.16184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GUB5_9STRA2.890e-3449.60Cholesterol 7-desaturase n=1 Tax=Hondaea fermental... [more]
A0A812TRJ3_9DINO2.000e-3345.16Cholesterol 7-desaturase n=1 Tax=Symbiodinium sp. ... [more]
A0A523K2X6_9DELT2.360e-3248.65Aromatic ring-hydroxylating dioxygenase subunit al... [more]
UPI00188959E41.290e-3150.00cholesterol 7-desaturase-like n=1 Tax=Rhipicephalu... [more]
A0A847F627_9DELT1.430e-3145.83Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A0D2UG78_CAPO31.610e-3143.90Cholesterol 7-desaturase n=1 Tax=Capsaspora owczar... [more]
A0A1X0HFY7_9MYCO1.940e-3147.83Rieske-type oxygenase n=2 Tax=Mycolicibacterium mo... [more]
A0A2D6BI17_9DELT2.430e-3146.02Iron-sulfur cluster-binding protein, Rieske family... [more]
UPI001892D46F6.770e-3148.25cholesterol 7-desaturase-like n=1 Tax=Rhipicephalu... [more]
A0A3Q3AW42_KRYMA7.580e-3145.31Cholesterol 7-desaturase n=1 Tax=Kryptolebias marm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66843contigM-pyrifera_M_contig66843:827..1207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score127.9
Seed ortholog evalue3.4e-27
Seed eggNOG ortholog192875.XP_004347526.1
KEGG rclassRC00138
KEGG koko:K14938
KEGG ReactionR11007,R11008
KEGG Pathwayko00981,ko04212,map00981,map04212
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cholesterol desaturase daf-36-like
EggNOG OGs2QS20@2759,39SMH@33154,COG4638@1
EC1.14.19.21
COG Functional cat.P
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.8297222-CDS-M-pyrifera_M_contig66843:826..12071622816558.8297222-CDS-M-pyrifera_M_contig66843:826..1207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66843 827..1207 +
1692278046.2519674-CDS-M-pyrifera_M_contig66843:826..12071692278046.2519674-CDS-M-pyrifera_M_contig66843:826..1207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66843 827..1207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66843.16184.1prot_M-pyrifera_M_contig66843.16184.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66843 827..1207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66843.16184.1

>prot_M-pyrifera_M_contig66843.16184.1 ID=prot_M-pyrifera_M_contig66843.16184.1|Name=mRNA_M-pyrifera_M_contig66843.16184.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
RERTRLASYTQGYPNGWFRLCSTSDLREGEVKSFEVLGLSLVAFRAESGA
IAVFDAYCPHLGAHLGVGGTVCGEELQCPFHQWKFDIDGNVACVPYAPRA
SPPVKLRKWPSIQYLDQVLFFHDRDEA
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mRNA from alignment at M-pyrifera_M_contig66843:827..1207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66843.16184.1 ID=mRNA_M-pyrifera_M_contig66843.16184.1|Name=mRNA_M-pyrifera_M_contig66843.16184.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig66843:827..1207+ (Macrocystis pyrifera P11B4 male)
CGTGAGAGAACCAGACTCGCTTCGTACACCCAAGGCTATCCCAACGGGTG GTTTCGCCTCTGCTCCACCAGCGACCTGCGAGAGGGAGAAGTCAAGTCCT TTGAAGTGCTCGGTCTCTCTCTCGTCGCGTTCCGTGCAGAATCAGGGGCA ATCGCTGTGTTTGACGCCTACTGCCCGCATCTGGGCGCGCATTTGGGCGT CGGAGGAACCGTGTGTGGAGAAGAGCTCCAATGCCCGTTCCACCAGTGGA AATTCGACATTGACGGAAACGTCGCCTGTGTCCCTTACGCTCCCAGAGCA TCCCCACCCGTCAAACTCAGGAAGTGGCCAAGCATCCAGTACCTCGACCA AGTGCTCTTCTTCCACGACAGAGATGAAGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66843:827..1207+

>mRNA_M-pyrifera_M_contig66843.16184.1 ID=mRNA_M-pyrifera_M_contig66843.16184.1|Name=mRNA_M-pyrifera_M_contig66843.16184.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig66843:827..1207+ (Macrocystis pyrifera P11B4 male)
CGTGAGAGAACCAGACTCGCTTCGTACACCCAAGGCTATCCCAACGGGTG
GTTTCGCCTCTGCTCCACCAGCGACCTGCGAGAGGGAGAAGTCAAGTCCT
TTGAAGTGCTCGGTCTCTCTCTCGTCGCGTTCCGTGCAGAATCAGGGGCA
ATCGCTGTGTTTGACGCCTACTGCCCGCATCTGGGCGCGCATTTGGGCGT
CGGAGGAACCGTGTGTGGAGAAGAGCTCCAATGCCCGTTCCACCAGTGGA
AATTCGACATTGACGGAAACGTCGCCTGTGTCCCTTACGCTCCCAGAGCA
TCCCCACCCGTCAAACTCAGGAAGTGGCCAAGCATCCAGTACCTCGACCA
AGTGCTCTTCTTCCACGACAGAGATGAAGCCCGTGAGAGAACCAGACTCG
CTTCGTACACCCAAGGCTATCCCAACGGGTGGTTTCGCCTCTGCTCCACC
AGCGACCTGCGAGAGGGAGAAGTCAAGTCCTTTGAAGTGCTCGGTCTCTC
TCTCGTCGCGTTCCGTGCAGAATCAGGGGCAATCGCTGTGTTTGACGCCT
ACTGCCCGCATCTGGGCGCGCATTTGGGCGTCGGAGGAACCGTGTGTGGA
GAAGAGCTCCAATGCCCGTTCCACCAGTGGAAATTCGACATTGACGGAAA
CGTCGCCTGTGTCCCTTACGCTCCCAGAGCATCCCCACCCGTCAAACTCA
GGAAGTGGCCAAGCATCCAGTACCTCGACCAAGTGCTCTTCTTCCACGAC
AGAGATGAAGCC
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