mRNA_M-pyrifera_M_contig66802.16175.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66802.16175.1
Unique NamemRNA_M-pyrifera_M_contig66802.16175.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66802.16175.1 vs. uniprot
Match: A0A7V9A811_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V9A811_9BACT)

HSP 1 Score: 259 bits (661), Expect = 5.580e-77
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 TTAFAVQENRLFTATFDRVDLWDLKTRKSILQTRPNQKAVIKSLAVSPTGEHFAVAYGGSVCCVCSVESGKTIYRIETNGGTPKRIAFSPDGTLLVTSGDVRDIQVWDIKKKALLNVLHGHRGGIVDV 384
            TTAFAVQENRLFTATFDRVDLWDLKTRKSILQTRPNQKAVIKSLAVSPTGEHFAVAYGGSVCCVCSVESGKTIYRIETNGGTPKRIAFSPDGTLLVTSGDVRDIQVWDIKKKALLNVLHGHRGGIVDV
Sbjct:  627 TTAFAVQENRLFTATFDRVDLWDLKTRKSILQTRPNQKAVIKSLAVSPTGEHFAVAYGGSVCCVCSVESGKTIYRIETNGGTPKRIAFSPDGTLLVTSGDVRDIQVWDIKKKALLNVLHGHRGGIVDV 754
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BLAST of mRNA_M-pyrifera_M_contig66802.16175.1 vs. uniprot
Match: A0A6A5KCI5_9PLEO (Periodic tryptophan protein 2 n=1 Tax=Decorospora gaudefroyi TaxID=184978 RepID=A0A6A5KCI5_9PLEO)

HSP 1 Score: 53.5 bits (127), Expect = 5.830e-5
Identity = 34/104 (32.69%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:   31 LFTATFD-RVDLWDLKTRKSILQTRPNQKAVIKSLAVSPTGEHFAVAYGGSVCC----VCSVESGKTIYRIETNGGTPKRIAFSPDGTLLVTSGDVRDIQVWDI 327
            L+TA+ D  +  WDL+  ++        +    SLAV P+GE   V   GS+      + SV++G+ + R+  + G    +AFSPDG+ LV++   R ++VW+I
Sbjct:  396 LYTASLDGSIRAWDLRRYRNFRTFTAPSRLSFSSLAVDPSGE---VVCAGSIDSFDIHIWSVQTGQLLDRLSGHEGPVSSLAFSPDGSALVSASWDRTVRVWNI 496
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66802.16175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7V9A811_9BACT5.580e-77100.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6A5KCI5_9PLEO5.830e-532.69Periodic tryptophan protein 2 n=1 Tax=Decorospora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66802contigM-pyrifera_M_contig66802:43..618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.2367592-CDS-M-pyrifera_M_contig66802:42..6181622816558.2367592-CDS-M-pyrifera_M_contig66802:42..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66802 43..618 -
1692278045.8978918-CDS-M-pyrifera_M_contig66802:42..6181692278045.8978918-CDS-M-pyrifera_M_contig66802:42..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66802 43..618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66802.16175.1prot_M-pyrifera_M_contig66802.16175.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66802 43..618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66802.16175.1

>prot_M-pyrifera_M_contig66802.16175.1 ID=prot_M-pyrifera_M_contig66802.16175.1|Name=mRNA_M-pyrifera_M_contig66802.16175.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
TTAFAVQENRLFTATFDRVDLWDLKTRKSILQTRPNQKAVIKSLAVSPTG
EHFAVAYGGSVCCVCSVESGKTIYRIETNGGTPKRIAFSPDGTLLVTSGD
VRDIQVWDIKKKALLNVLHGHRGGIVDVSFSPDGERIASASDDRTIRIWN
LKKRRPPQILTGHADGVRRLRYSKDGESLVSASADGTIRFWD
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mRNA from alignment at M-pyrifera_M_contig66802:43..618-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66802.16175.1 ID=mRNA_M-pyrifera_M_contig66802.16175.1|Name=mRNA_M-pyrifera_M_contig66802.16175.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig66802:43..618- (Macrocystis pyrifera P11B4 male)
ACAACGGCTTTTGCTGTTCAAGAGAACCGTCTGTTCACTGCCACCTTCGA
TCGGGTTGATCTCTGGGATCTCAAAACCCGAAAATCGATCCTGCAAACTC
GTCCAAATCAAAAAGCGGTGATTAAGTCCCTCGCGGTCAGTCCCACCGGC
GAACATTTTGCCGTTGCCTATGGTGGCTCGGTTTGTTGCGTGTGTAGCGT
CGAAAGTGGCAAAACAATTTACCGGATCGAGACCAACGGCGGGACCCCCA
AGCGAATCGCATTTAGCCCCGATGGAACGCTTCTGGTGACCTCTGGCGAC
GTACGCGACATTCAAGTCTGGGATATCAAAAAGAAAGCACTCTTAAACGT
ACTGCATGGCCATCGCGGGGGAATTGTTGACGTAAGCTTCAGCCCCGACG
GCGAACGAATTGCGTCCGCAAGCGATGATCGTACGATCCGAATTTGGAAT
CTGAAAAAGCGACGTCCTCCCCAAATTTTGACAGGACATGCCGATGGAGT
TCGGCGGCTACGCTATTCTAAAGATGGCGAGTCGCTTGTGTCCGCCAGCG
CCGACGGTACCATCCGTTTTTGGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66802:43..618-

>mRNA_M-pyrifera_M_contig66802.16175.1 ID=mRNA_M-pyrifera_M_contig66802.16175.1|Name=mRNA_M-pyrifera_M_contig66802.16175.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig66802:43..618- (Macrocystis pyrifera P11B4 male)
ACAACGGCTTTTGCTGTTCAAGAGAACCGTCTGTTCACTGCCACCTTCGA
TCGGGTTGATCTCTGGGATCTCAAAACCCGAAAATCGATCCTGCAAACTC
GTCCAAATCAAAAAGCGGTGATTAAGTCCCTCGCGGTCAGTCCCACCGGC
GAACATTTTGCCGTTGCCTATGGTGGCTCGGTTTGTTGCGTGTGTAGCGT
CGAAAGTGGCAAAACAATTTACCGGATCGAGACCAACGGCGGGACCCCCA
AGCGAATCGCATTTAGCCCCGATGGAACGCTTCTGGTGACCTCTGGCGAC
GTACGCGACATTCAAGTCTGGGATATCAAAAAGAAAGCACTCTTAAACGT
ACTGCATGGCCATCGCGGGGGAATTGTTGACGTAAGCTTCAGCCCCGACG
GCGAACGAATTGCGTCCGCAAGCGATGATCGTACGATCCGAATTTGGAAT
CTGAAAAAGCGACGTCCTCCCCAAATTTTGACAGGACATGCCGATGGAGT
TCGGCGGCTACGCTATTCTAAAGATGGCGAGTCGCTTGTGTCCGCCAGCG
CCGACGGTACCATCCGTTTTTGGGATACAACGGCTTTTGCTGTTCAAGAG
AACCGTCTGTTCACTGCCACCTTCGATCGGGTTGATCTCTGGGATCTCAA
AACCCGAAAATCGATCCTGCAAACTCGTCCAAATCAAAAAGCGGTGATTA
AGTCCCTCGCGGTCAGTCCCACCGGCGAACATTTTGCCGTTGCCTATGGT
GGCTCGGTTTGTTGCGTGTGTAGCGTCGAAAGTGGCAAAACAATTTACCG
GATCGAGACCAACGGCGGGACCCCCAAGCGAATCGCATTTAGCCCCGATG
GAACGCTTCTGGTGACCTCTGGCGACGTACGCGACATTCAAGTCTGGGAT
ATCAAAAAGAAAGCACTCTTAAACGTACTGCATGGCCATCGCGGGGGAAT
TGTTGACGTAAGCTTCAGCCCCGACGGCGAACGAATTGCGTCCGCAAGCG
ATGATCGTACGATCCGAATTTGGAATCTGAAAAAGCGACGTCCTCCCCAA
ATTTTGACAGGACATGCCGATGGAGTTCGGCGGCTACGCTATTCTAAAGA
TGGCGAGTCGCTTGTGTCCGCCAGCGCCGACGGTACCATCCGTTTTTGGG
AT
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