mRNA_M-pyrifera_M_contig6675.16166.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6675.16166.1
Unique NamemRNA_M-pyrifera_M_contig6675.16166.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6675.16166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6675contigM-pyrifera_M_contig6675:10663..11260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size598
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.7931333-CDS-M-pyrifera_M_contig6675:10662..110281622816557.7931333-CDS-M-pyrifera_M_contig6675:10662..11028Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6675 10663..11028 +
1692278045.7231617-CDS-M-pyrifera_M_contig6675:10662..110281692278045.7231617-CDS-M-pyrifera_M_contig6675:10662..11028Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6675 10663..11028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.810658-UTR-M-pyrifera_M_contig6675:11028..112601622816557.810658-UTR-M-pyrifera_M_contig6675:11028..11260Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6675 11029..11260 +
1692278045.7332182-UTR-M-pyrifera_M_contig6675:11028..112601692278045.7332182-UTR-M-pyrifera_M_contig6675:11028..11260Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6675 11029..11260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6675.16166.1prot_M-pyrifera_M_contig6675.16166.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6675 10663..11028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6675.16166.1

>prot_M-pyrifera_M_contig6675.16166.1 ID=prot_M-pyrifera_M_contig6675.16166.1|Name=mRNA_M-pyrifera_M_contig6675.16166.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
PHSKPPFLLFETHKKTHTRLLVAALHLVPGTVLRTGLNASFSSSSHSLLP
TPLSKKHPKTQPNPSSCHILIARPFCPILPTTNHTVAADGSIQSYVRSNK
TVTIHPFNRRYDPLLTTGRFV*
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mRNA from alignment at M-pyrifera_M_contig6675:10663..11260+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6675.16166.1 ID=mRNA_M-pyrifera_M_contig6675.16166.1|Name=mRNA_M-pyrifera_M_contig6675.16166.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=598bp|location=Sequence derived from alignment at M-pyrifera_M_contig6675:10663..11260+ (Macrocystis pyrifera P11B4 male)
CCCCACTCCAAGCCCCCCTTCCTTCTTTTCGAAACACACAAAAAGACACA
CACCCGACTGCTTGTTGCTGCTCTTCATCTTGTACCTGGTACTGTTTTAC
GGACGGGTCTAAATGCTTCCTTCTCATCCTCCTCCCACTCTCTTCTTCCC
ACCCCCTTATCAAAAAAGCATCCAAAAACACAACCAAACCCCTCCTCCTG
TCATATACTCATCGCGCGCCCGTTTTGCCCTATATTGCCCACAACCAACC
ACACCGTAGCAGCAGACGGAAGCATTCAAAGTTACGTACGTAGCAACAAA
ACAGTTACTATCCATCCGTTCAATCGTCGGTACGACCCACTACTTACTAC
TGGGCGTTTTGTGTGAGGGCTAAAAAAAAAAGAGGGGGGGTTGAGGGGTT
GAGGAATTAAGGGGAGGAGGTCGGTCGCGCGAGCCAAACCACTGGTAACC
ATAGGCAACGCCATATATCTCTTTCTCTACTTGCTAGCAGCCATAGCTAG
CTGTCGTTGTAGTTATAGCTGCTGCTGCTGCCACTTACTATGCGCATCAT
AGACAACACCAAAATACCAAAAGCCAAGTAGCCACCAACCAAATCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6675:10663..11260+

>mRNA_M-pyrifera_M_contig6675.16166.1 ID=mRNA_M-pyrifera_M_contig6675.16166.1|Name=mRNA_M-pyrifera_M_contig6675.16166.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig6675:10663..11260+ (Macrocystis pyrifera P11B4 male)
CCCCACTCCAAGCCCCCCTTCCTTCTTTTCGAAACACACAAAAAGACACA
CACCCGACTGCTTGTTGCTGCTCTTCATCTTGTACCTGGTACTGTTTTAC
GGACGGGTCTAAATGCTTCCTTCTCATCCTCCTCCCACTCTCTTCTTCCC
ACCCCCTTATCAAAAAAGCATCCAAAAACACAACCAAACCCCTCCTCCTG
TCATATACTCATCGCGCGCCCGTTTTGCCCTATATTGCCCACAACCAACC
ACACCGTAGCAGCAGACGGAAGCATTCAAAGTTACGTACGTAGCAACAAA
ACAGTTACTATCCATCCGTTCAATCGTCGGTACGACCCACTACTTACTAC
TGGGCGTTTTGTGTGACCCCACTCCAAGCCCCCCTTCCTTCTTTTCGAAA
CACACAAAAAGACACACACCCGACTGCTTGTTGCTGCTCTTCATCTTGTA
CCTGGTACTGTTTTACGGACGGGTCTAAATGCTTCCTTCTCATCCTCCTC
CCACTCTCTTCTTCCCACCCCCTTATCAAAAAAGCATCCAAAAACACAAC
CAAACCCCTCCTCCTGTCATATACTCATCGCGCGCCCGTTTTGCCCTATA
TTGCCCACAACCAACCACACCGTAGCAGCAGACGGAAGCATTCAAAGTTA
CGTACGTAGCAACAAAACAGTTACTATCCATCCGTTCAATCGTCGGTACG
ACCCACTACTTACTACTGGGCGTTTTGTGTGA
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