mRNA_M-pyrifera_M_contig66604.16147.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66604.16147.1
Unique NamemRNA_M-pyrifera_M_contig66604.16147.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66604.16147.1 vs. uniprot
Match: A0A7S4MG76_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MG76_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 5.010e-9
Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   82 FALGSFSVFLVVVCAALLSTLLSNAPVIFLREAELETGQVDVFLEPPGKDGMEFINGT 255
            +ALG  + F+VV   AL+ ++LS+AP++FL+ AELE+G++DVFL P  + G +F+N T
Sbjct:    3 YALGFLACFIVVFVVALMVSVLSHAPIVFLKLAELESGEMDVFLLPQKRSGFDFLNYT 60
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BLAST of mRNA_M-pyrifera_M_contig66604.16147.1 vs. uniprot
Match: L8HCM7_ACACA (Efflux ABC transporter, permease domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCM7_ACACA)

HSP 1 Score: 58.5 bits (140), Expect = 5.890e-8
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   43 LQTLREVRGSPLLFALGSFSVFLVVVCAALLSTLLSNAPVIFLREAELETGQVDVFLEPPGKDGMEFINGTELGAALE 276
            +QT++E++   + F LG  + FLVV+  A + T+L+NAPVIFLR AEL  G+ DV L      G   +N T +   L+
Sbjct:   55 VQTIKEIKARKVNFCLGFLACFLVVMVVAFMVTILANAPVIFLRLAELTQGETDVILSAGDWSGYGALNYTLISGMLK 132
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BLAST of mRNA_M-pyrifera_M_contig66604.16147.1 vs. uniprot
Match: A0A482RAE9_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RAE9_9ARCH)

HSP 1 Score: 53.9 bits (128), Expect = 5.240e-7
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:   61 VRGSPLLFALGSFSVFLVVVCAALLSTLLSNAPVIFLREAELETGQVDVFLEPPGKDGMEFINGTELGAAL 273
            ++ +P ++ +G  S+FLVV  AA   TL+S  P+IFLREAE  +GQVDV + P        +N T   AA+
Sbjct:   11 LQRAPCMYCIGCSSIFLVVAIAAAAQTLVSKVPLIFLREAEAASGQVDVRITPDEYLSTATLNYTRFAAAV 81
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BLAST of mRNA_M-pyrifera_M_contig66604.16147.1 vs. uniprot
Match: A0A7S0K479_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K479_CAFRO)

HSP 1 Score: 51.6 bits (122), Expect = 1.480e-5
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   46 QTLREVRGSPLLFALGSFSVFLVVVCAALLSTLLSNAPVIFLREAELETGQVDVFL 213
            Q  RE   SP+   LG  SV +VV  AA + TLL+NAP++FL+EAE+  GQ D+ L
Sbjct:   86 QAKREAFASPIQTCLGCCSVLIVVAVAATVQTLLANAPLVFLQEAEVGYGQADMVL 141
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BLAST of mRNA_M-pyrifera_M_contig66604.16147.1 vs. uniprot
Match: A0A7S1CII3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CII3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-5
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:   22 AVVWDGFLQTLREVRGSPLLFALGSFSVFLVVVCAALLSTLLSNAPVIFLREAELETGQVDVFLEPPGKDGMEFINGTELGAAL 273
            A+VW    QT REV  + + + +G  S  +VV+ +A++ TLL  AP+IFLREAE    ++D+ +        EF+N T +   L
Sbjct:   26 AMVW----QTGREVSRNKVTYCVGVMSCLIVVLVSAVMQTLLGQAPLIFLREAETRNNEIDMTVWSERWPRTEFLNYTRVAEQL 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66604.16147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S4MG76_9EUKA5.010e-948.28Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8HCM7_ACACA5.890e-841.03Efflux ABC transporter, permease domain containing... [more]
A0A482RAE9_9ARCH5.240e-742.25Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S0K479_CAFRO1.480e-550.00Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A7S1CII3_9STRA1.620e-536.90Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66604contigM-pyrifera_M_contig66604:361..636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.5688171-CDS-M-pyrifera_M_contig66604:360..6361622816556.5688171-CDS-M-pyrifera_M_contig66604:360..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66604 361..636 -
1692278044.9107358-CDS-M-pyrifera_M_contig66604:360..6361692278044.9107358-CDS-M-pyrifera_M_contig66604:360..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66604 361..636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66604.16147.1prot_M-pyrifera_M_contig66604.16147.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66604 361..636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66604.16147.1

>prot_M-pyrifera_M_contig66604.16147.1 ID=prot_M-pyrifera_M_contig66604.16147.1|Name=mRNA_M-pyrifera_M_contig66604.16147.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
SSWGALWAVVWDGFLQTLREVRGSPLLFALGSFSVFLVVVCAALLSTLLS
NAPVIFLREAELETGQVDVFLEPPGKDGMEFINGTELGAALE
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mRNA from alignment at M-pyrifera_M_contig66604:361..636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66604.16147.1 ID=mRNA_M-pyrifera_M_contig66604.16147.1|Name=mRNA_M-pyrifera_M_contig66604.16147.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig66604:361..636- (Macrocystis pyrifera P11B4 male)
TCTTCTTGGGGCGCGTTGTGGGCGGTGGTGTGGGACGGGTTTCTGCAGAC
GCTGCGTGAGGTCCGTGGTTCTCCGCTGTTGTTCGCTCTCGGCTCGTTTT
CGGTGTTTTTGGTGGTGGTGTGTGCCGCGTTGCTGTCTACGCTGCTGTCC
AACGCCCCGGTGATCTTCCTGCGGGAGGCGGAGCTGGAGACGGGGCAGGT
GGATGTGTTCCTGGAGCCTCCTGGCAAGGACGGGATGGAGTTCATCAATG
GCACGGAGCTTGGGGCGGCGTTGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66604:361..636-

>mRNA_M-pyrifera_M_contig66604.16147.1 ID=mRNA_M-pyrifera_M_contig66604.16147.1|Name=mRNA_M-pyrifera_M_contig66604.16147.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig66604:361..636- (Macrocystis pyrifera P11B4 male)
TCTTCTTGGGGCGCGTTGTGGGCGGTGGTGTGGGACGGGTTTCTGCAGAC
GCTGCGTGAGGTCCGTGGTTCTCCGCTGTTGTTCGCTCTCGGCTCGTTTT
CGGTGTTTTTGGTGGTGGTGTGTGCCGCGTTGCTGTCTACGCTGCTGTCC
AACGCCCCGGTGATCTTCCTGCGGGAGGCGGAGCTGGAGACGGGGCAGGT
GGATGTGTTCCTGGAGCCTCCTGGCAAGGACGGGATGGAGTTCATCAATG
GCACGGAGCTTGGGGCGGCGTTGGAGTCTTCTTGGGGCGCGTTGTGGGCG
GTGGTGTGGGACGGGTTTCTGCAGACGCTGCGTGAGGTCCGTGGTTCTCC
GCTGTTGTTCGCTCTCGGCTCGTTTTCGGTGTTTTTGGTGGTGGTGTGTG
CCGCGTTGCTGTCTACGCTGCTGTCCAACGCCCCGGTGATCTTCCTGCGG
GAGGCGGAGCTGGAGACGGGGCAGGTGGATGTGTTCCTGGAGCCTCCTGG
CAAGGACGGGATGGAGTTCATCAATGGCACGGAGCTTGGGGCGGCGTTGG
AG
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