mRNA_M-pyrifera_M_contig66602.16146.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66602.16146.1
Unique NamemRNA_M-pyrifera_M_contig66602.16146.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: A0A7S4IB78_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IB78_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 5.080e-19
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    1 MKYETESAATWLTNQLNSELLSHEQTRRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            MKYETESAA++  +++N  L   +    FQ+ + + MC K+A HWYE  P RGQA+R ++ D +   VD +++ A +RAG   + H    P  GL MW+DPGEV
Sbjct:    1 MKYETESAASFWCSKVNPAL-GEQVLCTFQKQVLNLMCEKYALHWYENNPLRGQAYREIVCDFETGQVDSILVTAADRAGFSLYQH-FSSP-RGLRMWVDPGEV 101          
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: UPI001CFB4509 (protein BTG3-like n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFB4509)

HSP 1 Score: 70.5 bits (171), Expect = 1.790e-12
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    1 MKYETESAATWLTNQLNSELLSHEQTRRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            MK E E+   ++ N L  + +  E  R F + L+  +C ++  HWY   PS+GQA+R + ++ K +  DE +L+AC R   VD+ ++L++P E LT+WIDPGEV
Sbjct:    1 MKEEIEAGVAFICN-LMLKNVEDETVRIFTEKLRDILCERYKGHWYPNNPSKGQAYRCIRINRKQR-PDESLLQAC-RESDVDY-YQLKLPKE-LTLWIDPGEV 99          
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: A0A6P7YTH2_9AMPH (uncharacterized protein LOC115476174 n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7YTH2_9AMPH)

HSP 1 Score: 71.2 bits (173), Expect = 1.880e-12
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 MKYETESAATWLTNQLNSEL-LSHEQTRRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            M+ E E+  ++L    N  + L  ++   F + L   +C K+A HWY E+P RGQA+R + V+   + VD+++L+AC ++ IV    KL +P E +T+WIDP EV
Sbjct:    1 MREEVEAGVSYLLRLFNRNMKLESQKLEEFGERLTEILCEKYADHWYPEDPVRGQAYRCIRVNSWQQ-VDDVLLKACAQSDIV--YTKLPLPVE-ITLWIDPKEV 101          
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: UPI0015B277BB (maternal B9.15 protein n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B277BB)

HSP 1 Score: 68.2 bits (165), Expect = 2.080e-11
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   79 RRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            RRF + L+  +C K+A HWY + PS+GQAFR + +D +    DE +L+AC  +G+     +L +P E LT+WIDP +V
Sbjct:   28 RRFAEKLKDLLCEKYARHWYPDNPSKGQAFRCIRIDRRGP-CDEPVLKACAESGLKP--SELALPHE-LTLWIDPLDV 101          
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: A0A8C9SSP1_SCLFO (Si:dkey-79d12.5 n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9SSP1_SCLFO)

HSP 1 Score: 63.2 bits (152), Expect = 3.300e-10
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 MKYETESAATWLTNQLNSEL-LSHEQTRRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            M+ E  +A  +L+N       +   + RRF + L+  +C K+A+HWY E P RGQAFR + ++ ++  +D  +L AC  + +     +L +P E +T+WIDP EV
Sbjct:    1 MRTEVRAAVDFLSNLAQRRGGVDQVRARRFAEKLEELLCEKYASHWYPENPGRGQAFRCIRIN-RSGPLDGSVLRACEESDLSPA--ELGLPPE-ITVWIDPEEV 101          
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: A0A7K5LRP3_VIRAL (B915 protein (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K5LRP3_VIRAL)

HSP 1 Score: 63.9 bits (154), Expect = 4.450e-10
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 MKYETESAATWLTNQLNSE-LLSHEQTRRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            MK E  +A  ++T  +  E  LS ++  RF   L + +  K+ +HWY E P RG+AFR + ++ K +  D L+ +AC  +G VDF  +L +P E LT+W+DP EV
Sbjct:    1 MKDEIAAAVFFITKLVKREGRLSRDEVERFAARLTTVLFEKYKSHWYPENPCRGEAFRCIRIN-KQQPWDPLLDQACVESG-VDF-SRLGLP-EELTVWVDPFEV 101          
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: A0A0N8JV65_SCLFO (Protein BTG3-like n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8JV65_SCLFO)

HSP 1 Score: 63.2 bits (152), Expect = 8.840e-10
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 MKYETESAATWLTNQLNSEL-LSHEQTRRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            M+ E  +A  +L+N       +   + RRF + L+  +C K+A+HWY E P RGQAFR + ++ ++  +D  +L AC  + +     +L +P E +T+WIDP EV
Sbjct:    1 MRTEVRAAVDFLSNLAQRRGGVDQVRARRFAEKLEELLCEKYASHWYPENPGRGQAFRCIRIN-RSGPLDGSVLRACEESDLSPA--ELGLPPE-ITVWIDPEEV 101          
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: A0A8C9WQ49_SCLFO (Protein BTG2-like n=3 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9WQ49_SCLFO)

HSP 1 Score: 63.2 bits (152), Expect = 1.000e-9
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 MKYETESAATWLTNQLNSEL-LSHEQTRRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            M+ E  +A  +L+N       +   + RRF + L+  +C K+A+HWY E P RGQAFR + ++ ++  +D  +L AC  + +     +L +P E +T+WIDP EV
Sbjct:    1 MRTEVRAAVDFLSNLAQRRGGVDQVRARRFAEKLEELLCEKYASHWYPENPGRGQAFRCIRIN-RSGPLDGSVLRACEESDLSPA--ELGLPPE-ITVWIDPEEV 101          
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: A0A646QCS9_9MYRI (Btg2 n=2 Tax=Scolopendridae TaxID=41363 RepID=A0A646QCS9_9MYRI)

HSP 1 Score: 61.6 bits (148), Expect = 1.310e-9
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 MKYETESAATWLTNQLN-SELLSHEQTRRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            M++E  SAAT+L N L  S  L+ +Q   F+  L+  +   +  HW+ E+P +G  +R L ++ K   +D LI +A   +G+ D      M    LT+WIDP EV
Sbjct:    1 MRFEINSAATFLMNLLRMSNSLNEQQLDIFRTKLEDLLKKHYQHHWFPEQPCKGSGYRCLRINHK---MDPLIAKAAEASGVSDSSRLQNMFPNELTLWIDPREV 102          
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Match: UPI001BB12E5C (protein BTG3-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB12E5C)

HSP 1 Score: 62.4 bits (150), Expect = 1.490e-9
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    1 MKYETESAATWLTNQLNSEL-LSHEQTRRFQQTLQSGMCNKFATHWYEEEPSRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWIDPGEV 312
            MK E  +A  +LT  +     L+ EQ  +F + L   +  KF  HWYE++PS+GQA+R + V  +N+  D +I +     GI    + L +P E LT+W+DP EV
Sbjct:    1 MKDEIAAAVVFLTRIVKRNTSLTAEQLSKFSEKLALTLVEKFRNHWYEDKPSKGQAYRCIRVS-RNEPRDSVISKTAKDCGI--HYNHLNLPAE-LTLWVDPMEV 101          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66602.16146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IB78_9EUKA5.080e-1943.27Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI001CFB45091.790e-1239.42protein BTG3-like n=1 Tax=Protopterus annectens Ta... [more]
A0A6P7YTH2_9AMPH1.880e-1238.10uncharacterized protein LOC115476174 n=1 Tax=Micro... [more]
UPI0015B277BB2.080e-1143.59maternal B9.15 protein n=1 Tax=Anguilla anguilla T... [more]
A0A8C9SSP1_SCLFO3.300e-1035.24Si:dkey-79d12.5 n=1 Tax=Scleropages formosus TaxID... [more]
A0A7K5LRP3_VIRAL4.450e-1039.05B915 protein (Fragment) n=2 Tax=Passeriformes TaxI... [more]
A0A0N8JV65_SCLFO8.840e-1035.24Protein BTG3-like n=1 Tax=Scleropages formosus Tax... [more]
A0A8C9WQ49_SCLFO1.000e-935.24Protein BTG2-like n=3 Tax=Scleropages formosus Tax... [more]
A0A646QCS9_9MYRI1.310e-935.24Btg2 n=2 Tax=Scolopendridae TaxID=41363 RepID=A0A6... [more]
UPI001BB12E5C1.490e-937.14protein BTG3-like n=1 Tax=Lytechinus variegatus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66602contigM-pyrifera_M_contig66602:211..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.9
Seed ortholog evalue4.8e-11
Seed eggNOG ortholog8364.ENSXETP00000008842
KEGG koko:K14443
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BTG family
EggNOG OGs38G4I@33154,3BNEE@33208,3D65Q@33213,48CZ7@7711,49A8R@7742,KOG4006@1,KOG4006@2759
COG Functional cat.T
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons1
Model size312
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.536328-CDS-M-pyrifera_M_contig66602:210..5221622816556.536328-CDS-M-pyrifera_M_contig66602:210..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66602 211..522 -
1692278044.8964682-CDS-M-pyrifera_M_contig66602:210..5221692278044.8964682-CDS-M-pyrifera_M_contig66602:210..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66602 211..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66602.16146.1prot_M-pyrifera_M_contig66602.16146.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66602 211..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66602.16146.1

>prot_M-pyrifera_M_contig66602.16146.1 ID=prot_M-pyrifera_M_contig66602.16146.1|Name=mRNA_M-pyrifera_M_contig66602.16146.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MKYETESAATWLTNQLNSELLSHEQTRRFQQTLQSGMCNKFATHWYEEEP
SRGQAFRSLIVDIKNKFVDELILEACNRAGIVDFLHKLQMPFEGLTMWID
PGEV
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mRNA from alignment at M-pyrifera_M_contig66602:211..522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66602.16146.1 ID=mRNA_M-pyrifera_M_contig66602.16146.1|Name=mRNA_M-pyrifera_M_contig66602.16146.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig66602:211..522- (Macrocystis pyrifera P11B4 male)
ATGAAGTACGAGACAGAGTCAGCAGCTACGTGGCTCACCAACCAGTTGAA CTCCGAGCTTCTCAGCCATGAGCAGACTCGCAGATTTCAGCAGACTCTGC AGTCGGGCATGTGCAACAAGTTCGCTACTCATTGGTACGAGGAGGAGCCC TCTCGAGGGCAGGCCTTTCGTTCTCTCATAGTCGACATCAAGAACAAGTT CGTGGACGAGCTCATTCTGGAGGCCTGCAACCGGGCGGGGATTGTCGACT TCCTTCACAAGCTTCAGATGCCCTTCGAGGGCCTGACGATGTGGATTGAT CCTGGAGAAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66602:211..522-

>mRNA_M-pyrifera_M_contig66602.16146.1 ID=mRNA_M-pyrifera_M_contig66602.16146.1|Name=mRNA_M-pyrifera_M_contig66602.16146.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig66602:211..522- (Macrocystis pyrifera P11B4 male)
ATGAAGTACGAGACAGAGTCAGCAGCTACGTGGCTCACCAACCAGTTGAA
CTCCGAGCTTCTCAGCCATGAGCAGACTCGCAGATTTCAGCAGACTCTGC
AGTCGGGCATGTGCAACAAGTTCGCTACTCATTGGTACGAGGAGGAGCCC
TCTCGAGGGCAGGCCTTTCGTTCTCTCATAGTCGACATCAAGAACAAGTT
CGTGGACGAGCTCATTCTGGAGGCCTGCAACCGGGCGGGGATTGTCGACT
TCCTTCACAAGCTTCAGATGCCCTTCGAGGGCCTGACGATGTGGATTGAT
CCTGGAGAAGTAATGAAGTACGAGACAGAGTCAGCAGCTACGTGGCTCAC
CAACCAGTTGAACTCCGAGCTTCTCAGCCATGAGCAGACTCGCAGATTTC
AGCAGACTCTGCAGTCGGGCATGTGCAACAAGTTCGCTACTCATTGGTAC
GAGGAGGAGCCCTCTCGAGGGCAGGCCTTTCGTTCTCTCATAGTCGACAT
CAAGAACAAGTTCGTGGACGAGCTCATTCTGGAGGCCTGCAACCGGGCGG
GGATTGTCGACTTCCTTCACAAGCTTCAGATGCCCTTCGAGGGCCTGACG
ATGTGGATTGATCCTGGAGAAGTA
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