mRNA_M-pyrifera_M_contig666.16144.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig666.16144.1
Unique NamemRNA_M-pyrifera_M_contig666.16144.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5JQ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ12_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.390e-38
Identity = 73/153 (47.71%), Postives = 101/153 (66.01%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKS-----VPDKALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR 444
            IS R+MKVR  + G++ G++FVV Y+PTE+ ++     V  K  FW    +A+ EV   +HL+ +MD NARTG R + C D K++GAYGRD +N+NG  LL  +++NQL L NT    P+  + +TFQS N+GK  YRLDF L RQ DR+ VR
Sbjct:   15 ISPRMMKVRLQI-GRTCGVNFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVR 166
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BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.190e-37
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKS-----VPDKALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR 444
            IS RLMKVR  + G++ G++FVV Y+PTE+ ++     V  K  FW    +A+ EV   +HL+ +MD NARTG R   C D KVLGAYGRD +N+NG  L   +++NQ  L NT    P+  + +TFQS N+GK  YRLDF L RQ DR+ VR
Sbjct:   75 ISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRGGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVR 226
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BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5KTM0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTM0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 6.130e-37
Identity = 70/150 (46.67%), Postives = 98/150 (65.33%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKSVPD-----KALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQ 435
            IS RLMKVR  + G++ G++ VV Y+PTE+ +++       K  FW    +A+ EV   +HL+ +MD NARTG R + C D K++GAYGRD +N+NG  LL  +++NQL L NT    P+  + +TFQS N+GK  YRLDF L RQ DR+
Sbjct:   82 ISPRLMKVRLQI-GRTCGVTLVVGYAPTETIRTIAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQTDRR 230
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BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 7.000e-37
Identity = 73/153 (47.71%), Postives = 101/153 (66.01%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKS-----VPDKALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR 444
            IS RLMKVR  + G++ G++FVV Y+PTE+ ++     V  K  FW    + + EV   +HL+ +MD NARTG R + C D K++GAYGRD +N+NG  LL  +A+N+L L+NT    P+    +TFQS N+GK  +RLDF L RQ DR+LVR
Sbjct:   75 ISPRLMKVRLQI-GRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPKG--VHTFQSSNKGKEKHRLDFILMRQTDRRLVR 224
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BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5K358_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K358_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 7.750e-37
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKS-----VPDKALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR 444
            IS RLMKVR  + G++ G++FVV Y+PTE+ ++     V  K  FW    +A+ EV   +HL+ +MD NARTG R + C D K++GAYGRD +N+NG  LL  +++NQL L NT    P+  + +TFQS N+GK  YRLDF L RQ DR+ VR
Sbjct:  170 ISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTACGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVR 321
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BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5KF07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF07_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 8.460e-37
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKS-----VPDKALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR 444
            IS RLMKVR  + G++ G++FVV Y+PTE+ ++     V  K  FW    +A+ EV   +HL+ +MD NARTG R + C D K++GAYGRD +N+NG  LL  +++NQL L NT    P+  + +TFQS N+GK  YRLDF L RQ DR+ VR
Sbjct:  192 ISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVR 343
[Close]
BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 9.050e-37
Identity = 73/153 (47.71%), Postives = 100/153 (65.36%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKS-----VPDKALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR 444
            I  RLMKVR  + G++ G++FVV Y+PTE+ ++     V  K  FW    +A+ EV   +HL+ +MD NARTG R + C D K++GAYGRD +N+NG  LL  +++NQL L NT    P+  + +TFQS N+GK  YRLDF L RQ DR+ VR
Sbjct:  178 ICPRLMKVRLQI-GRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVR 329
[Close]
BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.280e-36
Identity = 73/153 (47.71%), Postives = 99/153 (64.71%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKSVPD-----KALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR 444
            IS RLMKVR  + G++ G++FVV Y+PTE+ ++        K  FW    +A+ EV   +HL+ +MD NARTG R + C D K++GAYGRD +N+NG  LL  +++NQL L NT S  P+  +  TFQS N+GK  Y LDF L RQ DR+ VR
Sbjct:  107 ISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDDNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYSRTPKGGVQQTFQSSNKGKEKYCLDFILMRQTDRRFVR 258
[Close]
BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.790e-36
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKS-----VPDKALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR 444
            IS RLMKVR  + G++ G++FVV Y+PTE+ ++     V  K  FW    +A+ EV   +HL+ +MD NARTG R + C D K++GAYGRD +N+NG  LL  +++NQL L NT    P+  + +TFQS N+GK  YRLDF L RQ DR+ VR
Sbjct:   75 ISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVR 226
[Close]
BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.210e-36
Identity = 72/153 (47.06%), Postives = 98/153 (64.05%), Query Frame = 1 
Query:    1 ISGRLMKVRSNLKGKSNGISFVVAYSPTESHKS-----VPDKALFWATQGSAVAEVPQGEHLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLDLVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR 444
            I+ RLMKVR  + G++ G++FVV Y+PTE+ ++     V  K  FW      + EV   +HL+ +MD NARTG R + C D K++GAYGRD +N+NG  LL  ++ NQL L NT    P+  + +TFQS N+GK  YRLDF L RQ DR+ VR
Sbjct:   75 INPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVR 226
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig666.16144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQ12_9PHAE2.390e-3847.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBZ6_9PHAE4.190e-3748.37Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KTM0_9PHAE6.130e-3746.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KP87_9PHAE7.000e-3747.71Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K358_9PHAE7.750e-3748.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KF07_9PHAE8.460e-3748.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KV75_9PHAE9.050e-3747.71Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KCV1_9PHAE1.280e-3647.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7A7_9PHAE1.790e-3648.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K259_9PHAE2.210e-3647.06Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig666contigM-pyrifera_M_contig666:23107..23550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size429
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.4493804-UTR-M-pyrifera_M_contig666:23106..231211622816556.4493804-UTR-M-pyrifera_M_contig666:23106..23121Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig666 23107..23121 +
1692278044.8550556-UTR-M-pyrifera_M_contig666:23106..231211692278044.8550556-UTR-M-pyrifera_M_contig666:23106..23121Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig666 23107..23121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.462379-CDS-M-pyrifera_M_contig666:23121..235501622816556.462379-CDS-M-pyrifera_M_contig666:23121..23550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig666 23122..23550 +
1692278044.8704813-CDS-M-pyrifera_M_contig666:23121..235501692278044.8704813-CDS-M-pyrifera_M_contig666:23121..23550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig666 23122..23550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig666.16144.1prot_M-pyrifera_M_contig666.16144.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig666 23122..23550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig666.16144.1

>prot_M-pyrifera_M_contig666.16144.1 ID=prot_M-pyrifera_M_contig666.16144.1|Name=mRNA_M-pyrifera_M_contig666.16144.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MKVRSNLKGKSNGISFVVAYSPTESHKSVPDKALFWATQGSAVAEVPQGE
HLLAMMDTNARTGPRGEDCVDDKVLGAYGRDTLNHNGRLLLAFSAENQLD
LVNTLSSAPRHRISYTFQSPNRGKGLYRLDFTLTRQPDRQLVR
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mRNA from alignment at M-pyrifera_M_contig666:23107..23550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig666.16144.1 ID=mRNA_M-pyrifera_M_contig666.16144.1|Name=mRNA_M-pyrifera_M_contig666.16144.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig666:23107..23550+ (Macrocystis pyrifera P11B4 male)
ATAAGTGGTCGGCTCATGAAGGTGCGATCAAACTTGAAGGGGAAATCGAA
TGGGATTTCCTTTGTGGTTGCGTACTCTCCGACTGAAAGTCACAAATCAG
TCCCTGACAAGGCGCTTTTTTGGGCCACACAAGGTAGCGCTGTTGCTGAA
GTGCCTCAAGGAGAACACCTTCTTGCCATGATGGATACTAATGCTCGCAC
TGGGCCAAGGGGGGAAGACTGCGTCGATGACAAGGTGCTGGGCGCATACG
GGCGGGATACGCTGAATCACAACGGACGGCTTCTGCTGGCATTCTCAGCA
GAAAACCAACTTGATCTTGTCAATACGTTATCCAGCGCACCCAGACATAG
AATCTCTTACACCTTTCAAAGTCCAAATCGTGGGAAAGGTCTCTACCGCC
TGGATTTTACCCTCACGCGGCAACCAGACAGACAACTCGTACGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig666:23107..23550+

>mRNA_M-pyrifera_M_contig666.16144.1 ID=mRNA_M-pyrifera_M_contig666.16144.1|Name=mRNA_M-pyrifera_M_contig666.16144.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig666:23107..23550+ (Macrocystis pyrifera P11B4 male)
ATGAAGGTGCGATCAAACTTGAAGGGGAAATCGAATGGGATTTCCTTTGT
GGTTGCGTACTCTCCGACTGAAAGTCACAAATCAGTCCCTGACAAGGCGC
TTTTTTGGGCCACACAAGGTAGCGCTGTTGCTGAAGTGCCTCAAGGAGAA
CACCTTCTTGCCATGATGGATACTAATGCTCGCACTGGGCCAAGGGGGGA
AGACTGCGTCGATGACAAGGTGCTGGGCGCATACGGGCGGGATACGCTGA
ATCACAACGGACGGCTTCTGCTGGCATTCTCAGCAGAAAACCAACTTGAT
CTTGTCAATACGTTATCCAGCGCACCCAGACATAGAATCTCTTACACCTT
TCAAAGTCCAAATCGTGGGAAAGGTCTCTACCGCCTGGATTTTACCCTCA
CGCGGCAACCAGACAGACAACTCGTACGAATGAAGGTGCGATCAAACTTG
AAGGGGAAATCGAATGGGATTTCCTTTGTGGTTGCGTACTCTCCGACTGA
AAGTCACAAATCAGTCCCTGACAAGGCGCTTTTTTGGGCCACACAAGGTA
GCGCTGTTGCTGAAGTGCCTCAAGGAGAACACCTTCTTGCCATGATGGAT
ACTAATGCTCGCACTGGGCCAAGGGGGGAAGACTGCGTCGATGACAAGGT
GCTGGGCGCATACGGGCGGGATACGCTGAATCACAACGGACGGCTTCTGC
TGGCATTCTCAGCAGAAAACCAACTTGATCTTGTCAATACGTTATCCAGC
GCACCCAGACATAGAATCTCTTACACCTTTCAAAGTCCAAATCGTGGGAA
AGGTCTCTACCGCCTGGATTTTACCCTCACGCGGCAACCAGACAGACAAC
TCGTACGA
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