mRNA_M-pyrifera_M_contig6657.16139.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6657.16139.1
Unique NamemRNA_M-pyrifera_M_contig6657.16139.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: D7FHQ9_ECTSI (Translocation protein SEC62 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHQ9_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.170e-58
Identity = 97/103 (94.17%), Postives = 98/103 (95.15%), Query Frame = 1 
Query:    1 SPDNSFHKDGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
            S +N F   GYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV
Sbjct:  104 SGNNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 206
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: A0A835ZAL0_9STRA (Translocation protein SEC62 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL0_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.970e-39
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:    1 SPDNSFHKDGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
            S D +F   GY+TWI+ GSQ LSHL T  II+GFL ITCFPIWP+ LK+W WY SVTLLV M+ FL+ R L++   W AGYEFW+LPRLFDE+L F ESFTPV
Sbjct:  103 SRDQTFISTGYYTWIYQGSQTLSHLMTTAIIVGFLTITCFPIWPQFLKIWAWYASVTLLVFMIVFLSARALIWLAMWTAGYEFWILPRLFDESLGFCESFTPV 205
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: A0A6V1K7K4_HETAK (Translocation protein SEC62 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7K4_HETAK)

HSP 1 Score: 129 bits (323), Expect = 2.770e-34
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:   31 YFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTP 306
            ++TWI+ G Q  S+  TAL+IIGFLL+TCFPIWP  LK+W+WY+SVTLL+ M+ F+TIR ++F   WI G+EFW+LPRLFD+ L F ESFTP
Sbjct:  106 FYTWIYDGDQTTSYFMTALLIIGFLLLTCFPIWPTFLKIWLWYISVTLLIFMLGFITIRAVIFLIFWIMGFEFWILPRLFDDNLGFTESFTP 197
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: I2CPB5_NANGC (Translocation protein SEC62 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CPB5_NANGC)

HSP 1 Score: 125 bits (313), Expect = 2.130e-32
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:   28 GYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
            GY+ WI+ GSQ LS+  T LII GFL ITCFPIWP  LKVW+WY+SVTLL  M+ FL +R L F F W+ GYEFW LP LFDE+L+F +SF P+
Sbjct:  139 GYYAWIYEGSQTLSNFMTFLIIAGFLAITCFPIWPHFLKVWLWYVSVTLLSFMLGFLLLRFLAFLFVWVTGYEFWFLPNLFDESLSFVDSFKPL 232
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: A0A7R9YBG5_9STRA (Translocation protein SEC62 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBG5_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.560e-32
Identity = 54/99 (54.55%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   13 SFHKDGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
            SF +DG++TWI+ GSQ +S+L T  +I+GFL  TCFPIWP+ +KVWMWYLSVT ++++   + IR   F   W+ GY+FW+LPR++DETL   ESFTP+
Sbjct:  100 SFTEDGFYTWIYQGSQTMSNLATVALIVGFLFFTCFPIWPQFMKVWMWYLSVTFILLIFGIIIIRLFFFLLLWLVGYDFWILPRMWDETLGVLESFTPL 198
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: A0A3M6VLQ6_9STRA (Translocation protein SEC62 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLQ6_9STRA)

HSP 1 Score: 122 bits (307), Expect = 9.140e-32
Identity = 53/103 (51.46%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    1 SPDNSFHKDGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
            +PD  F  DGY+TW++ GS+ L ++ TAL+IIGFL+ITCFPIWP+  KV +WY+SVT L+ +  F+ +R  +FF  W+ GYE+W+LP +FD+ L+ A+SF P+
Sbjct:  111 TPDQEFSPDGYYTWMYEGSKTLRNIMTALLIIGFLIITCFPIWPQWAKVALWYMSVTFLIFVAIFVVVRLFIFFMLWMIGYEYWLLPNIFDDNLSVADSFVPL 213
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: K0TGD9_THAOC (Translocation protein SEC62 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGD9_THAOC)

HSP 1 Score: 121 bits (304), Expect = 2.060e-31
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:   16 FHKDGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
            F +  YFTWI+ G+++ SHL T  +IIGFL  TCFPIWP  LKV++WY+SV++L+ +   +T R LLF F W+ GYEFW LP LFDE+L F ESF PV
Sbjct:  107 FDESAYFTWIYEGNKKFSHLMTTGLIIGFLCCTCFPIWPNFLKVFVWYMSVSMLIFIFFLITARALLFLFVWVMGYEFWFLPNLFDESLGFVESFIPV 204
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: A0A662WBW0_9STRA (Translocation protein SEC62 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WBW0_9STRA)

HSP 1 Score: 120 bits (300), Expect = 8.030e-31
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 SPDNSFHKDGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
            SP   F  DGY+TW++ GS+ L ++ TAL+IIGFL+ITCFPIWP+  KV +WY+SVT L+ +  F+ +R  +FF  W+ GYE+W+LP +FD+ L+ A+SF P+
Sbjct:   96 SPKQDFAPDGYYTWMYEGSKTLRNIMTALLIIGFLVITCFPIWPQWAKVALWYMSVTFLIFIAIFVVVRLFIFFVLWMIGYEYWLLPNIFDDNLSVADSFVPL 198
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: B7G2F8_PHATC (Translocation protein SEC62 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2F8_PHATC)

HSP 1 Score: 119 bits (298), Expect = 1.620e-30
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   16 FHKDGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
            F + GYFTW++ G + +SHL +A +I+GFL   CFPIWP+ L+V++WYLSVTLL+ +   +T R L F F WI G+EFW LP LFDETL+F +SF PV
Sbjct:  107 FDEAGYFTWVYEGDKTMSHLMSAGLIVGFLFCVCFPIWPQFLRVFVWYLSVTLLLFIFILVTFRALAFLFIWIIGFEFWFLPNLFDETLSFVDSFKPV 204
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BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Match: A0A421H3B4_9STRA (Translocation protein SEC62 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421H3B4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.250e-30
Identity = 51/103 (49.51%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 SPDNSFHKDGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
            +P   F  +GY+TW++ GS+ L ++ TAL+IIGFL+ITCFPIWP+  KV +WY+SVT L+ +  F+ +R  +FF  W+ GYE+W+LP +FD+ L+ A+SF P+
Sbjct:   81 TPKQDFAPEGYYTWMYEGSKTLRNVMTALLIIGFLVITCFPIWPQWAKVALWYMSVTFLIFIAIFVVVRLFIFFMLWMVGYEYWLLPNIFDDNLSVADSFVPI 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6657.16139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHQ9_ECTSI1.170e-5894.17Translocation protein SEC62 n=2 Tax=Ectocarpus Tax... [more]
A0A835ZAL0_9STRA3.970e-3965.05Translocation protein SEC62 n=1 Tax=Tribonema minu... [more]
A0A6V1K7K4_HETAK2.770e-3461.96Translocation protein SEC62 n=1 Tax=Heterosigma ak... [more]
I2CPB5_NANGC2.130e-3262.77Translocation protein SEC62 n=2 Tax=Nannochloropsi... [more]
A0A7R9YBG5_9STRA2.560e-3254.55Translocation protein SEC62 (Fragment) n=1 Tax=Pin... [more]
A0A3M6VLQ6_9STRA9.140e-3251.46Translocation protein SEC62 n=1 Tax=Peronospora ef... [more]
K0TGD9_THAOC2.060e-3157.14Translocation protein SEC62 n=1 Tax=Thalassiosira ... [more]
A0A662WBW0_9STRA8.030e-3151.46Translocation protein SEC62 n=1 Tax=Nothophytophth... [more]
B7G2F8_PHATC1.620e-3056.12Translocation protein SEC62 n=2 Tax=Phaeodactylum ... [more]
A0A421H3B4_9STRA2.250e-3049.51Translocation protein SEC62 n=2 Tax=Phytophthora k... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6657contigM-pyrifera_M_contig6657:766..1623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue1.6e-46
Seed eggNOG ortholog2880.D7FHQ9
Preferred nameSEC62
KEGG koko:K09490,ko:K12275
KEGG TC1.A.15.1,1.A.15.2,1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006620,GO:0006810,GO:0006886,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0023052,GO:0030867,GO:0031090,GO:0031204,GO:0031205,GO:0031207,GO:0031224,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0038023,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0060089,GO:0065002,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098588,GO:0098796,GO:0098827
EggNOG free text desc.posttranslational protein targeting to endoplasmic reticulum membrane
EggNOG OGsCOG5232@1,KOG2927@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko03110,ko04131,ko04147
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.1847749-CDS-M-pyrifera_M_contig6657:765..9301622816556.1847749-CDS-M-pyrifera_M_contig6657:765..930Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6657 766..930 -
1692278044.7139213-CDS-M-pyrifera_M_contig6657:765..9301692278044.7139213-CDS-M-pyrifera_M_contig6657:765..930Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6657 766..930 -
1622816556.1957798-CDS-M-pyrifera_M_contig6657:1479..16231622816556.1957798-CDS-M-pyrifera_M_contig6657:1479..1623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6657 1480..1623 -
1692278044.7279563-CDS-M-pyrifera_M_contig6657:1479..16231692278044.7279563-CDS-M-pyrifera_M_contig6657:1479..1623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6657 1480..1623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6657.16139.1prot_M-pyrifera_M_contig6657.16139.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6657 766..1623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6657.16139.1

>prot_M-pyrifera_M_contig6657.16139.1 ID=prot_M-pyrifera_M_contig6657.16139.1|Name=mRNA_M-pyrifera_M_contig6657.16139.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
SPDNSFHKDGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVW
MWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESF
TPV
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mRNA from alignment at M-pyrifera_M_contig6657:766..1623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6657.16139.1 ID=mRNA_M-pyrifera_M_contig6657.16139.1|Name=mRNA_M-pyrifera_M_contig6657.16139.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig6657:766..1623- (Macrocystis pyrifera P11B4 male)
AGCCCCGACAACAGCTTCCACAAGGACGGTTACTTCACGTGGATTTTCCT
GGGGTCTCAGCGACTGAGCCATTTGTTCACGGCTCTGATCATCATCGGCT
TCCTGCTCATCACTTGCTTCCCGATCTGGCCTCGCATCCTCAAGGTACAT
ATATATATATATACATATGCACGCTGTTTCGACAGGTTCGAAATGCCTTC
ATCGATATATCGAAGAGTTCCATATATCTGATACATCGATGTATCGATAT
ATCGAAATGTTGAAGCATTGAAATATCATCGTACCGAAATGTCACAATAC
CGAAATATTGAACTATCGACGTATCACACACAAAGTCGATTTATCTAAGT
TTCGATATATTGCCAAGTCGCGGCTTTGGCAATTACTGCGAAAATTACGG
CCGCGCATTCTCAAAGCACACTACACACCGCCTACGCTCGTAAAAGACAA
GACCAGATCGCGATCTATGGTAGACAATCTACCGTACATCATCTACTGTA
TCATGGTTGTACACCCCCCACCCCTCCCCCATTCACCGATACCCGCATTT
TTTTTTTCTTCTTCTTCTTGAGACTGCAACCCGAGTACCTTCAACCCCCC
TCCCCCCGCCACCCATAACGCCATGCTGTTTTTTTCTCCGTAATGCTCAT
TTTCCTGTGCCTGCAATCAATCGTGCAAAATCTTCCATTCGAGGTGTGGA
TGTGGTACCTCTCGGTGACGCTGCTGGTGATCATGGTGACGTTCCTGACG
ATCCGGTGTTTGCTTTTCTTCTTCGCTTGGATTGCGGGCTACGAGTTCTG
GGTGCTGCCCCGACTTTTCGACGAGACCCTCGCGTTCGCAGAGTCCTTCA
CCCCGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6657:766..1623-

>mRNA_M-pyrifera_M_contig6657.16139.1 ID=mRNA_M-pyrifera_M_contig6657.16139.1|Name=mRNA_M-pyrifera_M_contig6657.16139.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig6657:766..1623- (Macrocystis pyrifera P11B4 male)
AGCCCCGACAACAGCTTCCACAAGGACGGTTACTTCACGTGGATTTTCCT
GGGGTCTCAGCGACTGAGCCATTTGTTCACGGCTCTGATCATCATCGGCT
TCCTGCTCATCACTTGCTTCCCGATCTGGCCTCGCATCCTCAAGAGCCCC
GACAACAGCTTCCACAAGGACGGTTACTTCACGTGGATTTTCCTGGGGTC
TCAGCGACTGAGCCATTTGTTCACGGCTCTGATCATCATCGGCTTCCTGC
TCATCACTTGCTTCCCGATCTGGCCTCGCATCCTCAAGGTGTGGATGTGG
TACCTCTCGGTGACGCTGCTGGTGATCATGGTGACGTTCCTGACGATCCG
GTGTTTGCTTTTCTTCTTCGCTTGGATTGCGGGCTACGAGTTCTGGGTGC
TGCCCCGACTTTTCGACGAGACCCTCGCGTTCGCAGAGTCCTTCACCCCG
GTGGTGTGGATGTGGTACCTCTCGGTGACGCTGCTGGTGATCATGGTGAC
GTTCCTGACGATCCGGTGTTTGCTTTTCTTCTTCGCTTGGATTGCGGGCT
ACGAGTTCTGGGTGCTGCCCCGACTTTTCGACGAGACCCTCGCGTTCGCA
GAGTCCTTCACCCCGGTG
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