mRNA_M-pyrifera_M_contig66457.16118.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66457.16118.1
Unique NamemRNA_M-pyrifera_M_contig66457.16118.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66457.16118.1 vs. uniprot
Match: A0A349B4U6_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B4U6_9ACTN)

HSP 1 Score: 59.7 bits (143), Expect = 3.300e-8
Identity = 43/101 (42.57%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:    4 ALFVVAVAVG-FVARPGRTDGAPMDPQSTAPDGARALRTLLD-----RYVDEVTTDGFDETTETVIVLEDGLTSNEDEALEAWVRDGGRLLWLDSRSTFLP 288
            AL V AV VG ++    +T G P+DP STAPDGARA+  LL        +DE+  D  D      +VL+D    +  EAL  WVR GG L+  D  ST  P
Sbjct:    9 ALLVAAVLVGAYLTAARQTQGPPLDPSSTAPDGARAVVELLGALAAVEVLDEIPGDDVD----AALVLQDRFDRDAGEALLDWVRRGGTLVVADVDSTLTP 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66457.16118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A349B4U6_9ACTN3.300e-842.57Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66457contigM-pyrifera_M_contig66457:89..718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.7338915-CDS-M-pyrifera_M_contig66457:88..7181622816554.7338915-CDS-M-pyrifera_M_contig66457:88..718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66457 89..718 -
1692278043.8946636-CDS-M-pyrifera_M_contig66457:88..7181692278043.8946636-CDS-M-pyrifera_M_contig66457:88..718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66457 89..718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66457.16118.1prot_M-pyrifera_M_contig66457.16118.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66457 89..718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66457.16118.1

>prot_M-pyrifera_M_contig66457.16118.1 ID=prot_M-pyrifera_M_contig66457.16118.1|Name=mRNA_M-pyrifera_M_contig66457.16118.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
VALFVVAVAVGFVARPGRTDGAPMDPQSTAPDGARALRTLLDRYVDEVTT
DGFDETTETVIVLEDGLTSNEDEALEAWVRDGGRLLWLDSRSTFLPVRPA
AASVASGEAQQVVRGECSIEELGDLSTLAGSDLRLFATDDASAVCFATQA
AGSPGGLAAVAAFPLDAGRVIVVDGGRLVDNEQLGEGDNAAMIVRLATAD
DAHAVAVLHP
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mRNA from alignment at M-pyrifera_M_contig66457:89..718-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66457.16118.1 ID=mRNA_M-pyrifera_M_contig66457.16118.1|Name=mRNA_M-pyrifera_M_contig66457.16118.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig66457:89..718- (Macrocystis pyrifera P11B4 male)
GTGGCGCTCTTCGTCGTCGCCGTCGCCGTCGGGTTCGTCGCCCGACCCGG
GCGGACCGACGGCGCCCCGATGGATCCGCAGTCGACCGCGCCCGACGGAG
CCCGGGCCCTTCGCACCTTGCTCGACCGGTACGTCGACGAGGTCACCACC
GATGGGTTCGACGAGACGACCGAGACCGTGATCGTCCTCGAAGACGGCCT
GACCTCGAACGAGGATGAGGCACTCGAGGCCTGGGTTCGAGACGGTGGGC
GATTGCTGTGGCTCGATTCACGCTCGACATTCCTGCCGGTTCGCCCGGCG
GCTGCATCGGTCGCAAGCGGCGAGGCCCAACAGGTGGTCCGAGGGGAGTG
CTCGATCGAGGAGCTGGGTGATCTGTCGACGCTCGCAGGATCGGACCTCC
GACTCTTTGCGACCGATGACGCATCGGCGGTGTGCTTCGCCACCCAGGCA
GCCGGATCCCCCGGAGGCCTTGCCGCTGTCGCAGCGTTCCCGCTCGATGC
CGGCCGAGTGATCGTGGTCGACGGTGGTCGGCTGGTCGACAACGAACAGC
TCGGCGAGGGGGACAACGCCGCAATGATCGTGCGTCTCGCCACGGCCGAC
GATGCTCACGCGGTCGCGGTTCTGCATCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66457:89..718-

>mRNA_M-pyrifera_M_contig66457.16118.1 ID=mRNA_M-pyrifera_M_contig66457.16118.1|Name=mRNA_M-pyrifera_M_contig66457.16118.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig66457:89..718- (Macrocystis pyrifera P11B4 male)
GTGGCGCTCTTCGTCGTCGCCGTCGCCGTCGGGTTCGTCGCCCGACCCGG
GCGGACCGACGGCGCCCCGATGGATCCGCAGTCGACCGCGCCCGACGGAG
CCCGGGCCCTTCGCACCTTGCTCGACCGGTACGTCGACGAGGTCACCACC
GATGGGTTCGACGAGACGACCGAGACCGTGATCGTCCTCGAAGACGGCCT
GACCTCGAACGAGGATGAGGCACTCGAGGCCTGGGTTCGAGACGGTGGGC
GATTGCTGTGGCTCGATTCACGCTCGACATTCCTGCCGGTTCGCCCGGCG
GCTGCATCGGTCGCAAGCGGCGAGGCCCAACAGGTGGTCCGAGGGGAGTG
CTCGATCGAGGAGCTGGGTGATCTGTCGACGCTCGCAGGATCGGACCTCC
GACTCTTTGCGACCGATGACGCATCGGCGGTGTGCTTCGCCACCCAGGCA
GCCGGATCCCCCGGAGGCCTTGCCGCTGTCGCAGCGTTCCCGCTCGATGC
CGGCCGAGTGATCGTGGTCGACGGTGGTCGGCTGGTCGACAACGAACAGC
TCGGCGAGGGGGACAACGCCGCAATGATCGTGCGTCTCGCCACGGCCGAC
GATGCTCACGCGGTCGCGGTTCTGCATCCCGTGGCGCTCTTCGTCGTCGC
CGTCGCCGTCGGGTTCGTCGCCCGACCCGGGCGGACCGACGGCGCCCCGA
TGGATCCGCAGTCGACCGCGCCCGACGGAGCCCGGGCCCTTCGCACCTTG
CTCGACCGGTACGTCGACGAGGTCACCACCGATGGGTTCGACGAGACGAC
CGAGACCGTGATCGTCCTCGAAGACGGCCTGACCTCGAACGAGGATGAGG
CACTCGAGGCCTGGGTTCGAGACGGTGGGCGATTGCTGTGGCTCGATTCA
CGCTCGACATTCCTGCCGGTTCGCCCGGCGGCTGCATCGGTCGCAAGCGG
CGAGGCCCAACAGGTGGTCCGAGGGGAGTGCTCGATCGAGGAGCTGGGTG
ATCTGTCGACGCTCGCAGGATCGGACCTCCGACTCTTTGCGACCGATGAC
GCATCGGCGGTGTGCTTCGCCACCCAGGCAGCCGGATCCCCCGGAGGCCT
TGCCGCTGTCGCAGCGTTCCCGCTCGATGCCGGCCGAGTGATCGTGGTCG
ACGGTGGTCGGCTGGTCGACAACGAACAGCTCGGCGAGGGGGACAACGCC
GCAATGATCGTGCGTCTCGCCACGGCCGACGATGCTCACGCGGTCGCGGT
TCTGCATCCC
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