mRNA_M-pyrifera_M_contig66421.16112.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66421.16112.1
Unique NamemRNA_M-pyrifera_M_contig66421.16112.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: A0A6H5KSG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.420e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   43 KGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTVL 168
            KGHSATVHHAEFSP GSLVASAS+DRTVRLW+PSARGGS+VL
Sbjct:    8 KGHSATVHHAEFSPKGSLVASASKDRTVRLWTPSARGGSSVL 49
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BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: A0A7L3WV41_9GRUI (POC1B protein (Fragment) n=1 Tax=Atlantisia rogersi TaxID=2478892 RepID=A0A7L3WV41_9GRUI)

HSP 1 Score: 65.1 bits (157), Expect = 1.200e-10
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   16 WP---GLKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTVL 168
            WP   G +A RF GH+A V   +FSPDG L+ASAS+DRTVRLW P   G S+VL
Sbjct:   12 WPLKAGSRAYRFVGHAAAVTGVQFSPDGQLLASASQDRTVRLWIPCIHGESSVL 65
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BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: A0A060YW16_ONCMY (Uncharacterized protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060YW16_ONCMY)

HSP 1 Score: 60.8 bits (146), Expect = 1.910e-9
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   25 LKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGST 162
            ++A RF GH   V   +FSP G LVASASRD+TVRLW PS +G ST
Sbjct:    1 MRAYRFVGHKDVVTSVQFSPSGHLVASASRDKTVRLWVPSVKGEST 46
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BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: A0A8J4UC92_CLAMG (POC1 centriolar protein B (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4UC92_CLAMG)

HSP 1 Score: 62.4 bits (150), Expect = 1.920e-9
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   19 PGLKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTVL 168
            P  +A RF GH   V    FSP G L+AS SRDRTVRLW+PS +G STVL
Sbjct:    7 PKSRAFRFIGHQDIVTAVHFSPSGELLASGSRDRTVRLWTPSIKGESTVL 56
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BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: A0A7M4E3B9_CROPO (POC1 centriolar protein B n=8 Tax=Crocodylia TaxID=1294634 RepID=A0A7M4E3B9_CROPO)

HSP 1 Score: 62.4 bits (150), Expect = 1.950e-9
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 MFEKNWPGLKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTVL 168
            M  K  P  +A RF GH   V+  +FSPDG L+ASAS+DRTVRLW P   G S+VL
Sbjct:    1 MIWKLKPQSRAFRFVGHVEAVNSVQFSPDGQLLASASQDRTVRLWVPCIHGESSVL 56
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BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: A0A8B9ZCG0_9AVES (POC1 centriolar protein A n=1 Tax=Buteo japonicus TaxID=224669 RepID=A0A8B9ZCG0_9AVES)

HSP 1 Score: 62.0 bits (149), Expect = 2.110e-9
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   19 PGLKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTV 165
            P ++A RF GH   V   +FSP G LVAS SRD+TVRLW PS +G STV
Sbjct:   12 PQMRAYRFVGHKDAVMCVQFSPSGHLVASGSRDKTVRLWVPSVKGESTV 60
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BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: UPI0003C4A687 (POC1 centriolar protein homolog A isoform X1 n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=UPI0003C4A687)

HSP 1 Score: 62.0 bits (149), Expect = 2.520e-9
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   19 PGLKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTV 165
            P ++A RF GH   V   +FSP G LVAS SRD+TVRLW PS +G STV
Sbjct:   12 PQMRAYRFVGHKDAVMCVQFSPSGHLVASGSRDKTVRLWVPSVKGESTV 60
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BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: A0A2I0LSN3_COLLI (POC1 centriolar protein A n=4 Tax=Columbidae TaxID=8930 RepID=A0A2I0LSN3_COLLI)

HSP 1 Score: 62.0 bits (149), Expect = 2.540e-9
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   19 PGLKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTV 165
            P ++A RF GH   V   +FSP G LVAS SRD+TVRLW PS +G STV
Sbjct:   12 PQMRAYRFVGHKDAVMCVQFSPSGHLVASGSRDKTVRLWIPSVKGESTV 60
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BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: A0A663MGZ0_ATHCN (POC1 centriolar protein A n=10 Tax=Neognathae TaxID=8825 RepID=A0A663MGZ0_ATHCN)

HSP 1 Score: 62.0 bits (149), Expect = 2.540e-9
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   19 PGLKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTV 165
            P ++A RF GH   V   +FSP G LVAS SRD+TVRLW PS +G STV
Sbjct:   12 PQMRAYRFVGHKDAVMCVQFSPSGHLVASGSRDKTVRLWVPSVKGESTV 60
[Close]
BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Match: UPI000907073D (POC1 centriolar protein homolog B isoform X3 n=2 Tax=Crocodylia TaxID=1294634 RepID=UPI000907073D)

HSP 1 Score: 62.0 bits (149), Expect = 2.580e-9
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   19 PGLKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTVL 168
            P  +A RF GH   V+  +FSPDG L+ASAS+DRTVRLW P   G S+VL
Sbjct:    7 PQSRAFRFVGHVEAVNSVQFSPDGQLLASASQDRTVRLWVPCIHGESSVL 56
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66421.16112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG1_9PHAE3.420e-1690.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7L3WV41_9GRUI1.200e-1059.26POC1B protein (Fragment) n=1 Tax=Atlantisia rogers... [more]
A0A060YW16_ONCMY1.910e-960.87Uncharacterized protein n=1 Tax=Oncorhynchus mykis... [more]
A0A8J4UC92_CLAMG1.920e-960.00POC1 centriolar protein B (Fragment) n=1 Tax=Clari... [more]
A0A7M4E3B9_CROPO1.950e-955.36POC1 centriolar protein B n=8 Tax=Crocodylia TaxID... [more]
A0A8B9ZCG0_9AVES2.110e-959.18POC1 centriolar protein A n=1 Tax=Buteo japonicus ... [more]
UPI0003C4A6872.520e-959.18POC1 centriolar protein homolog A isoform X1 n=1 T... [more]
A0A2I0LSN3_COLLI2.540e-959.18POC1 centriolar protein A n=4 Tax=Columbidae TaxID... [more]
A0A663MGZ0_ATHCN2.540e-959.18POC1 centriolar protein A n=10 Tax=Neognathae TaxI... [more]
UPI000907073D2.580e-958.00POC1 centriolar protein homolog B isoform X3 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66421contigM-pyrifera_M_contig66421:864..1121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.3
Seed ortholog evalue3.2e-08
Seed eggNOG ortholog10228.TriadP51125
Preferred namePOC1A
KEGG koko:K16482
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0002062,GO:0002063,GO:0003413,GO:0003416,GO:0003417,GO:0003418,GO:0003431,GO:0003433,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007275,GO:0007276,GO:0007283,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0031023,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0035265,GO:0036064,GO:0040007,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045787,GO:0046605,GO:0046607,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051216,GO:0051493,GO:0051495,GO:0051704,GO:0051726,GO:0060271,GO:0060348,GO:0060349,GO:0060350,GO:0060351,GO:0061448,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0090068,GO:0098868,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902850,GO:1903047,GO:1905515
EggNOG free text desc.POC1 centriolar protein
EggNOG OGs2CMZ3@1,2QSVJ@2759,38CVK@33154,3B94W@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.4035854-CDS-M-pyrifera_M_contig66421:863..11211622816554.4035854-CDS-M-pyrifera_M_contig66421:863..1121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66421 864..1121 -
1692278043.7343378-CDS-M-pyrifera_M_contig66421:863..11211692278043.7343378-CDS-M-pyrifera_M_contig66421:863..1121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66421 864..1121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66421.16112.1prot_M-pyrifera_M_contig66421.16112.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66421 864..1121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66421.16112.1

>prot_M-pyrifera_M_contig66421.16112.1 ID=prot_M-pyrifera_M_contig66421.16112.1|Name=mRNA_M-pyrifera_M_contig66421.16112.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
MFEKNWPGLKALRFKGHSATVHHAEFSPDGSLVASASRDRTVRLWSPSAR
GGSTVLKGHMGGVRHASFSRNGRLLITASEDKTVKV
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mRNA from alignment at M-pyrifera_M_contig66421:864..1121-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66421.16112.1 ID=mRNA_M-pyrifera_M_contig66421.16112.1|Name=mRNA_M-pyrifera_M_contig66421.16112.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig66421:864..1121- (Macrocystis pyrifera P11B4 male)
ATGTTTGAAAAAAACTGGCCCGGCCTAAAGGCGCTGAGGTTCAAGGGTCA
CTCGGCGACCGTCCACCACGCGGAGTTCTCCCCCGACGGTTCGCTTGTTG
CGTCGGCGTCGCGGGACCGAACGGTGCGGCTCTGGTCGCCGTCGGCTAGG
GGGGGCTCGACGGTCCTCAAGGGGCACATGGGGGGGGTCCGGCACGCCTC
CTTTTCGAGGAACGGGAGATTGTTAATCACGGCCTCCGAGGACAAGACGG
TCAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66421:864..1121-

>mRNA_M-pyrifera_M_contig66421.16112.1 ID=mRNA_M-pyrifera_M_contig66421.16112.1|Name=mRNA_M-pyrifera_M_contig66421.16112.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig66421:864..1121- (Macrocystis pyrifera P11B4 male)
ATGTTTGAAAAAAACTGGCCCGGCCTAAAGGCGCTGAGGTTCAAGGGTCA
CTCGGCGACCGTCCACCACGCGGAGTTCTCCCCCGACGGTTCGCTTGTTG
CGTCGGCGTCGCGGGACCGAACGGTGCGGCTCTGGTCGCCGTCGGCTAGG
GGGGGCTCGACGGTCCTCAAGGGGCACATGGGGGGGGTCCGGCACGCCTC
CTTTTCGAGGAACGGGAGATTGTTAATCACGGCCTCCGAGGACAAGACGG
TCAAGGTGATGTTTGAAAAAAACTGGCCCGGCCTAAAGGCGCTGAGGTTC
AAGGGTCACTCGGCGACCGTCCACCACGCGGAGTTCTCCCCCGACGGTTC
GCTTGTTGCGTCGGCGTCGCGGGACCGAACGGTGCGGCTCTGGTCGCCGT
CGGCTAGGGGGGGCTCGACGGTCCTCAAGGGGCACATGGGGGGGGTCCGG
CACGCCTCCTTTTCGAGGAACGGGAGATTGTTAATCACGGCCTCCGAGGA
CAAGACGGTCAAGGTG
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