mRNA_M-pyrifera_M_contig66377.16106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66377.16106.1
Unique NamemRNA_M-pyrifera_M_contig66377.16106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66377.16106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66377contigM-pyrifera_M_contig66377:869..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog1511.CLOST_0372
KEGG rclassRC00537,RC00983
KEGG koko:K01053
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220
KEGG ModuleM00129
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM SMP-30 Gluconolaconase
EggNOG OGs1UHWM@1239,COG3386@1,COG3386@2
EC3.1.1.17
COG Functional cat.G
Best tax levelFirmicutes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size432
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.0711386-UTR-M-pyrifera_M_contig66377:868..8771622816554.0711386-UTR-M-pyrifera_M_contig66377:868..877Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66377 869..877 +
1692278043.499712-UTR-M-pyrifera_M_contig66377:868..8771692278043.499712-UTR-M-pyrifera_M_contig66377:868..877Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66377 869..877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.0842018-CDS-M-pyrifera_M_contig66377:877..13001622816554.0842018-CDS-M-pyrifera_M_contig66377:877..1300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66377 878..1300 +
1692278043.5283844-CDS-M-pyrifera_M_contig66377:877..13001692278043.5283844-CDS-M-pyrifera_M_contig66377:877..1300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66377 878..1300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66377.16106.1prot_M-pyrifera_M_contig66377.16106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66377 878..1300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66377.16106.1

>prot_M-pyrifera_M_contig66377.16106.1 ID=prot_M-pyrifera_M_contig66377.16106.1|Name=mRNA_M-pyrifera_M_contig66377.16106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MGPIGTTFGSSTSFSWFPISDASAYYFQLRKSGGALVAGFWSYRTTTSVE
TPPGDYQWRVIPVNARSEQSRDSLWVDFTVQEEPLVREDLLGVEPDASVP
APLAKLSFPESVVQAKDGTIYIADTMAHVIRRVVDGRIEVY
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mRNA from alignment at M-pyrifera_M_contig66377:869..1300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66377.16106.1 ID=mRNA_M-pyrifera_M_contig66377.16106.1|Name=mRNA_M-pyrifera_M_contig66377.16106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig66377:869..1300+ (Macrocystis pyrifera P11B4 male)
TTTTCGCCGATGGGACCCATTGGGACGACCTTTGGTTCCTCGACTTCTTT
TTCGTGGTTTCCGATCAGTGATGCGTCCGCTTACTATTTTCAGTTGAGAA
AATCGGGCGGTGCCTTGGTAGCTGGGTTCTGGTCTTATCGGACGACTACT
TCTGTTGAGACGCCTCCGGGGGACTACCAATGGCGAGTCATTCCTGTCAA
TGCTCGTTCTGAACAGTCACGAGACTCACTATGGGTTGATTTCACGGTCC
AGGAAGAACCGTTAGTTCGAGAGGACCTTCTGGGGGTTGAGCCCGACGCA
TCCGTTCCTGCTCCGCTGGCAAAGTTGTCGTTTCCTGAATCCGTTGTTCA
GGCTAAAGATGGGACGATTTATATTGCCGATACAATGGCCCATGTGATTC
GGCGAGTCGTCGATGGACGCATCGAAGTCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66377:869..1300+

>mRNA_M-pyrifera_M_contig66377.16106.1 ID=mRNA_M-pyrifera_M_contig66377.16106.1|Name=mRNA_M-pyrifera_M_contig66377.16106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig66377:869..1300+ (Macrocystis pyrifera P11B4 male)
ATGGGACCCATTGGGACGACCTTTGGTTCCTCGACTTCTTTTTCGTGGTT
TCCGATCAGTGATGCGTCCGCTTACTATTTTCAGTTGAGAAAATCGGGCG
GTGCCTTGGTAGCTGGGTTCTGGTCTTATCGGACGACTACTTCTGTTGAG
ACGCCTCCGGGGGACTACCAATGGCGAGTCATTCCTGTCAATGCTCGTTC
TGAACAGTCACGAGACTCACTATGGGTTGATTTCACGGTCCAGGAAGAAC
CGTTAGTTCGAGAGGACCTTCTGGGGGTTGAGCCCGACGCATCCGTTCCT
GCTCCGCTGGCAAAGTTGTCGTTTCCTGAATCCGTTGTTCAGGCTAAAGA
TGGGACGATTTATATTGCCGATACAATGGCCCATGTGATTCGGCGAGTCG
TCGATGGACGCATCGAAGTCTACATGGGACCCATTGGGACGACCTTTGGT
TCCTCGACTTCTTTTTCGTGGTTTCCGATCAGTGATGCGTCCGCTTACTA
TTTTCAGTTGAGAAAATCGGGCGGTGCCTTGGTAGCTGGGTTCTGGTCTT
ATCGGACGACTACTTCTGTTGAGACGCCTCCGGGGGACTACCAATGGCGA
GTCATTCCTGTCAATGCTCGTTCTGAACAGTCACGAGACTCACTATGGGT
TGATTTCACGGTCCAGGAAGAACCGTTAGTTCGAGAGGACCTTCTGGGGG
TTGAGCCCGACGCATCCGTTCCTGCTCCGCTGGCAAAGTTGTCGTTTCCT
GAATCCGTTGTTCAGGCTAAAGATGGGACGATTTATATTGCCGATACAAT
GGCCCATGTGATTCGGCGAGTCGTCGATGGACGCATCGAAGTCTAC
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