mRNA_M-pyrifera_M_contig66366.16102.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66366.16102.1
Unique NamemRNA_M-pyrifera_M_contig66366.16102.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66366.16102.1 vs. uniprot
Match: D8LBT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.630e-13
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    4 ARMYHSEQHTIDGFVREPAQRIAEETALRETGALLSRFPPIFGKITRRRQLL 159
            AR+Y S    ID  VREP QR+ E+T LRETGALLSRFPPIF K+TRR+Q+L
Sbjct:   55 ARLYDSAHRAIDRGVREPTQRVVEDTTLRETGALLSRFPPIFAKVTRRKQVL 106
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66366.16102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBT1_ECTSI2.630e-1367.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66366contigM-pyrifera_M_contig66366:419..1121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size150
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66366.16102.1prot_M-pyrifera_M_contig66366.16102.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66366 419..1112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.816829-CDS-M-pyrifera_M_contig66366:418..5121622816553.816829-CDS-M-pyrifera_M_contig66366:418..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66366 419..512 -
1692278043.3233466-CDS-M-pyrifera_M_contig66366:418..5121692278043.3233466-CDS-M-pyrifera_M_contig66366:418..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66366 419..512 -
1622816553.8293488-CDS-M-pyrifera_M_contig66366:1056..11121622816553.8293488-CDS-M-pyrifera_M_contig66366:1056..1112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66366 1057..1112 -
1692278043.339398-CDS-M-pyrifera_M_contig66366:1056..11121692278043.339398-CDS-M-pyrifera_M_contig66366:1056..1112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66366 1057..1112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.8434029-UTR-M-pyrifera_M_contig66366:1112..11211622816553.8434029-UTR-M-pyrifera_M_contig66366:1112..1121Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66366 1113..1121 -
1692278043.3492365-UTR-M-pyrifera_M_contig66366:1112..11211692278043.3492365-UTR-M-pyrifera_M_contig66366:1112..1121Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig66366 1113..1121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66366.16102.1

>prot_M-pyrifera_M_contig66366.16102.1 ID=prot_M-pyrifera_M_contig66366.16102.1|Name=mRNA_M-pyrifera_M_contig66366.16102.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MYHSEQHTIDGFVREPAQRIAEETALRETGALLSRFPPIFGKITRRRQLL
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mRNA from alignment at M-pyrifera_M_contig66366:419..1121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66366.16102.1 ID=mRNA_M-pyrifera_M_contig66366.16102.1|Name=mRNA_M-pyrifera_M_contig66366.16102.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=703bp|location=Sequence derived from alignment at M-pyrifera_M_contig66366:419..1121- (Macrocystis pyrifera P11B4 male)
CAGGCACGGATGTACCACTCAGAACAGCACACCATCGACGGGTTCGTCAG
GGAGCCCGCTCAAAGGTACGCCCCTCCCCCCCACTCCCCCAACAAGTATG
CGTGCGCTGGTTTATAGAAGTAGAGAGCTGAGTTTTTTTCCGCTCTCGTG
CTTCGCGAGTGACCCCCCCCCCCCCCCATCCCGCCTCCACAAACATGTGG
ATTGGTTGGTTGGTTGATTGGGTTGTTGGCTGGTTGGCTGGTTGGTTGTT
GGTTGCTTACCTCGTCGGCTTTATTGGTGAAGTCGTTTGGTTGATTTCTG
GGTTGGTAGGTTGGTAAGTTGTTGGTTGGTCGAGTCGGCTGATCCAATCG
GTTGGTTGTTTACTGGGTCGGTTGGTTGGTTGATGCTTGAGTGAGGAAGT
TGGATGATTAAATGATTGGTCGGATTTTGTTTGTTGGACAGTTGGTTGGT
CGGTTGGTCGATCGATTGATCGGTCGGTCGGTCGGTTGGTTGGTTGTTTG
GTTGGTTGATAGGTTGGATTGATGGCGCGCTGATTGGTTGACCCTTTTCT
GCGCCGTTGACCGACCATCTGCCCCATTATCCCGCCACCCTTCCTTTGAA
TTTAATTAGGATAGCGGAAGAGACGGCGCTACGCGAAACCGGAGCACTCC
TGAGCAGATTCCCTCCCATCTTCGGCAAGATAACCCGCCGCCGGCAACTT
CTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66366:419..1121-

>mRNA_M-pyrifera_M_contig66366.16102.1 ID=mRNA_M-pyrifera_M_contig66366.16102.1|Name=mRNA_M-pyrifera_M_contig66366.16102.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig66366:419..1121- (Macrocystis pyrifera P11B4 male)
ATGTACCACTCAGAACAGCACACCATCGACGGGTTCGTCAGGGAGCCCGC
TCAAAGATGTACCACTCAGAACAGCACACCATCGACGGGTTCGTCAGGGA
GCCCGCTCAAAGGATAGCGGAAGAGACGGCGCTACGCGAAACCGGAGCAC
TCCTGAGCAGATTCCCTCCCATCTTCGGCAAGATAACCCGCCGCCGGCAA
CTTCTGGATAGCGGAAGAGACGGCGCTACGCGAAACCGGAGCACTCCTGA
GCAGATTCCCTCCCATCTTCGGCAAGATAACCCGCCGCCGGCAACTTCTG
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