mRNA_M-pyrifera_M_contig66350.16100.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66350.16100.1
Unique NamemRNA_M-pyrifera_M_contig66350.16100.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66350.16100.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.050e-34
Identity = 68/143 (47.55%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    1 WKALTEKYNGHTKEARRACHEKLVNTKMEPGQDPDDFVFVLDECRDLLEEMGQTVHAERYEDIILQALPPEYERVRTASHERRNFGLDDIRHMVHTMYVDNLSRSVSAKPIAGRGIAMQMVGHTSSDVQCYYCKGFGHVTQNC 429
            WK L + ++G TKEARRAC  KL +T M+ G+DP DF+  +D+ R  LE+MG+ +  E YED++L+AL  EY  +R  SH+ R FGL +IR  +  MY+D LSR  S   +AGRG+AM      SS+VQC  C+ FGH    C
Sbjct:   64 WKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSA---ESSNVQCRNCQEFGHYANEC 203          
BLAST of mRNA_M-pyrifera_M_contig66350.16100.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.180e-16
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1
Query:    1 WKALTEKYNGHTKEARRACHEKLVNTKMEPGQDPDDFVFVLDECRDLLEEMGQTVHAERYEDIILQALP--PEYERVRTASHERRNF-GLDDIRHMVHTMYVDNLSRSVSAKPIAGRGIAMQMVGHTSSDVQCYYCKGFGHVTQNC 429
            W+AL E+++  T+EARRACH +L N +   G DP DF     + +  L+ +G+ V    Y DI+L  L   P +E +R   H R NF  +D ++   +  +VD  SR+ S   ++GRG AM +   T    QC  CK +GH  ++C
Sbjct:   96 WRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDLVYLDIMLSGLTKAPVFEFIREM-HYRDNFTSVDSLQATANCFFVDQHSRNASGPVVSGRGAAMAVASDTD---QCRRCKAYGHFQRDC 237          
BLAST of mRNA_M-pyrifera_M_contig66350.16100.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.180e-14
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   10 LTEKYNGHTKEARRACHEKLVNTKMEPGQDPDDFVFVLDECRDLLEEMGQTVHAERYEDIILQALPPEYERVRTASHERRNFGLDDIRHMVHTMYVDNLSRSVSAKPIAGRGIAMQMVGHTSSDVQCYYCKGFGHVTQNCA 432
            L   YN  T E  RA  E+L+NT MEP Q+PDD+       R   E+MG+T+    + D  +     EY+ V+   +   +F +D ++  +  M++D  SR+     IAGRG AM     TS +  C+ C   GH+ +NC+
Sbjct:  100 LNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTAT--TSEEPTCFDCGEKGHIWRNCS 238          
BLAST of mRNA_M-pyrifera_M_contig66350.16100.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.250e-14
Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 1
Query:   61 EKLVNTKMEPGQDPDDFVFVLDECRDLLEEMGQTVHAERYEDIILQALPPEYERVRTASHERRNFGLDDIRHMVHTMYVDNLSRSVSAKPIAGRGIAMQMVGHTSSDVQCYYCKGFGHVTQNC 429
            EKL NT MEPGQ+PDD+       R  +E+MG+ +    ++D+ +     EY+ V+   H   NF ++ ++  +H M +D  SR  S   IAGRG  M  V   S    C+ C   GH+ +NC
Sbjct:    2 EKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPM--VTTASEQETCFGCGEKGHIRRNC 122          
BLAST of mRNA_M-pyrifera_M_contig66350.16100.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.920e-11
Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 1
Query:    4 KALTEKYNGHTKEARRACHEKLVNTKMEPGQDPDDFVFVLDECRDLLEEMGQTVHAERYEDIILQALP--PEYERVRTASHERRNFGLDDIRHMVHTMYVDNLSRSVSAKPIAGRGIAMQMVGHTSSDVQCYYCKGFGHVTQNC 429
            +AL E+++  T+EARRAC+ +L N +   G DP +F     + +  L+ + + V    Y DI+L  L   PE+  +R   +      +D ++   +   VD  SR+ S   ++GRG +M +   T+   QC  CK  GH  ++C
Sbjct:   83 RALNERFDAQTQEARRACYNELFNLRHLAGGDPIEFFTKGWDLKLRLKVLEEEVSDPVYLDIMLSGLTKAPEFNFIREMHYRDNITSVDILQATANRFLVDQQSRNASGPVVSGRGTSMAVASDTN---QCRRCKAHGHFQRDC 223          
BLAST of mRNA_M-pyrifera_M_contig66350.16100.1 vs. uniprot
Match: A0A6H5K626_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K626_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 9.540e-9
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 WKALTEKYNGHTKEARRACHEKLVNTKMEPGQDPDDFVFVLDECRDLLEEMGQTVHAERYEDIILQALP--PEYERVRTASHERRNF-GLDDIRHMVHTMYVDNLSRSVSAKPIA 336
            W+AL E+++  T+EARRACH +L N +   G DP DF     + +  L+ +G+ V    Y DI+L  L   PE++ +R   H R NF  +D ++   +  +VD  SR+ S  P+A
Sbjct:  107 WRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDPVYMDIMLSGLTKAPEFKFIREM-HYRDNFTSVDSLQATANRFFVDQQSRNASG-PVA 219          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66350.16100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.050e-3447.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC00_9PHAE2.180e-1636.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW66_9PHAE2.180e-1434.04CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6Q1_ECTSI2.250e-1435.77CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KER0_9PHAE4.920e-1130.56CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K626_9PHAE9.540e-936.52Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66350contigM-pyrifera_M_contig66350:591..1037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.7236662-CDS-M-pyrifera_M_contig66350:590..10371622816553.7236662-CDS-M-pyrifera_M_contig66350:590..1037Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66350 591..1037 -
1692278043.272894-CDS-M-pyrifera_M_contig66350:590..10371692278043.272894-CDS-M-pyrifera_M_contig66350:590..1037Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66350 591..1037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66350.16100.1prot_M-pyrifera_M_contig66350.16100.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66350 591..1037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66350.16100.1

>prot_M-pyrifera_M_contig66350.16100.1 ID=prot_M-pyrifera_M_contig66350.16100.1|Name=mRNA_M-pyrifera_M_contig66350.16100.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
WKALTEKYNGHTKEARRACHEKLVNTKMEPGQDPDDFVFVLDECRDLLEE
MGQTVHAERYEDIILQALPPEYERVRTASHERRNFGLDDIRHMVHTMYVD
NLSRSVSAKPIAGRGIAMQMVGHTSSDVQCYYCKGFGHVTQNCAILKKD
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mRNA from alignment at M-pyrifera_M_contig66350:591..1037-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66350.16100.1 ID=mRNA_M-pyrifera_M_contig66350.16100.1|Name=mRNA_M-pyrifera_M_contig66350.16100.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig66350:591..1037- (Macrocystis pyrifera P11B4 male)
TGGAAGGCTCTGACTGAGAAGTACAACGGCCACACTAAGGAGGCCAGAAG GGCGTGCCACGAGAAACTCGTCAACACGAAGATGGAGCCCGGCCAGGATC CGGACGACTTCGTTTTCGTTCTGGACGAATGCCGTGACCTACTCGAGGAA ATGGGACAGACAGTACACGCCGAGAGGTACGAGGACATCATTCTCCAAGC CCTTCCGCCCGAGTACGAGAGGGTACGAACCGCCAGCCACGAGAGGCGAA ACTTTGGACTGGACGACATTCGGCACATGGTACACACTATGTACGTCGAC AACCTTTCGCGCTCTGTCAGCGCTAAGCCGATCGCAGGCCGCGGCATTGC CATGCAGATGGTGGGACACACCAGCAGTGACGTGCAGTGCTACTACTGCA AAGGATTCGGACACGTAACGCAGAACTGCGCCATCTTGAAGAAGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66350:591..1037-

>mRNA_M-pyrifera_M_contig66350.16100.1 ID=mRNA_M-pyrifera_M_contig66350.16100.1|Name=mRNA_M-pyrifera_M_contig66350.16100.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig66350:591..1037- (Macrocystis pyrifera P11B4 male)
TGGAAGGCTCTGACTGAGAAGTACAACGGCCACACTAAGGAGGCCAGAAG
GGCGTGCCACGAGAAACTCGTCAACACGAAGATGGAGCCCGGCCAGGATC
CGGACGACTTCGTTTTCGTTCTGGACGAATGCCGTGACCTACTCGAGGAA
ATGGGACAGACAGTACACGCCGAGAGGTACGAGGACATCATTCTCCAAGC
CCTTCCGCCCGAGTACGAGAGGGTACGAACCGCCAGCCACGAGAGGCGAA
ACTTTGGACTGGACGACATTCGGCACATGGTACACACTATGTACGTCGAC
AACCTTTCGCGCTCTGTCAGCGCTAAGCCGATCGCAGGCCGCGGCATTGC
CATGCAGATGGTGGGACACACCAGCAGTGACGTGCAGTGCTACTACTGCA
AAGGATTCGGACACGTAACGCAGAACTGCGCCATCTTGAAGAAGGACTGG
AAGGCTCTGACTGAGAAGTACAACGGCCACACTAAGGAGGCCAGAAGGGC
GTGCCACGAGAAACTCGTCAACACGAAGATGGAGCCCGGCCAGGATCCGG
ACGACTTCGTTTTCGTTCTGGACGAATGCCGTGACCTACTCGAGGAAATG
GGACAGACAGTACACGCCGAGAGGTACGAGGACATCATTCTCCAAGCCCT
TCCGCCCGAGTACGAGAGGGTACGAACCGCCAGCCACGAGAGGCGAAACT
TTGGACTGGACGACATTCGGCACATGGTACACACTATGTACGTCGACAAC
CTTTCGCGCTCTGTCAGCGCTAAGCCGATCGCAGGCCGCGGCATTGCCAT
GCAGATGGTGGGACACACCAGCAGTGACGTGCAGTGCTACTACTGCAAAG
GATTCGGACACGTAACGCAGAACTGCGCCATCTTGAAGAAGGAC
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