mRNA_M-pyrifera_M_contig66338.16092.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66338.16092.1
Unique NamemRNA_M-pyrifera_M_contig66338.16092.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig66338.16092.1 vs. uniprot
Match: D8LSU7_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.210e-16
Identity = 68/108 (62.96%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    1 NSLPLLFFRNVVFSLRGTPSCCAEKVITQLKMLSAQNKQTSTAALEESRPASSHRRCVSESVIGVGGXXXXXXXXXXXXXSSAGRKHAAHSLLTLAQLQYKRAAVSKV 324
            N + LL F+ +     G  S C++ VI QLKMLSAQ+KQ STAALE SRP  SHRR  SES  G  G  XXXXXXXX    SAGRKHAAHSL+TLAQL +KRAAVSK+
Sbjct:  441 NQIYLLDFQKLEGDPFGFMSLCSQ-VINQLKMLSAQSKQMSTAALERSRP--SHRRSASESSGGARGRPXXXXXXXXSP--SAGRKHAAHSLMTLAQL-HKRAAVSKI 542
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BLAST of mRNA_M-pyrifera_M_contig66338.16092.1 vs. uniprot
Match: A0A6H5J9V4_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.420e-16
Identity = 65/108 (60.19%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 NSLPLLFFRNVVFSLRGTPSCCAEKVITQLKMLSAQNKQTSTAALEESRPASSHRRCVSESVIGVGGXXXXXXXXXXXXXSSAGRKHAAHSLLTLAQLQYKRAAVSKV 324
            N + LL F+ +     G  S C++ VI QLKMLSAQ+KQ STAALE SRP  SHRR  SES  G  G     XXXXX    SAGRKHAAHSL+TLAQL +KRAAVSK+
Sbjct:  966 NQIYLLDFQKLEGDPFGFMSVCSQ-VINQLKMLSAQSKQMSTAALERSRP--SHRRSASESSGGARGLPGRGXXXXXSP--SAGRKHAAHSLMTLAQL-HKRAAVSKI 1067
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66338.16092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU7_ECTSI4.210e-1662.96Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5J9V4_9PHAE4.420e-1660.19Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66338contigM-pyrifera_M_contig66338:912..1235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine protein kinase
Ec32 orthologEc-26_001490.1
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.410176-CDS-M-pyrifera_M_contig66338:911..12351622816553.410176-CDS-M-pyrifera_M_contig66338:911..1235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66338 912..1235 -
1692278043.1136453-CDS-M-pyrifera_M_contig66338:911..12351692278043.1136453-CDS-M-pyrifera_M_contig66338:911..1235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66338 912..1235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66338.16092.1prot_M-pyrifera_M_contig66338.16092.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66338 912..1235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66338.16092.1

>prot_M-pyrifera_M_contig66338.16092.1 ID=prot_M-pyrifera_M_contig66338.16092.1|Name=mRNA_M-pyrifera_M_contig66338.16092.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
NSLPLLFFRNVVFSLRGTPSCCAEKVITQLKMLSAQNKQTSTAALEESRP
ASSHRRCVSESVIGVGGGVGVGGGGGGGGGSSAGRKHAAHSLLTLAQLQY
KRAAVSKV
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mRNA from alignment at M-pyrifera_M_contig66338:912..1235-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66338.16092.1 ID=mRNA_M-pyrifera_M_contig66338.16092.1|Name=mRNA_M-pyrifera_M_contig66338.16092.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig66338:912..1235- (Macrocystis pyrifera P11B4 male)
AACTCGCTCCCACTTCTTTTCTTCCGCAATGTTGTTTTTTCCCTCCGTGG
CACGCCTTCATGTTGTGCGGAAAAGGTGATCACCCAGCTCAAGATGCTTA
GCGCGCAGAACAAGCAGACTTCGACCGCTGCGCTCGAGGAGAGCCGCCCC
GCCTCCTCTCACCGCCGCTGTGTCAGCGAGAGCGTCATCGGTGTTGGTGG
CGGTGTTGGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGGTCGTCTGCGG
GAAGAAAGCATGCGGCGCACTCCCTGTTGACCCTGGCCCAGCTACAGTAC
AAGAGAGCGGCAGTTTCGAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66338:912..1235-

>mRNA_M-pyrifera_M_contig66338.16092.1 ID=mRNA_M-pyrifera_M_contig66338.16092.1|Name=mRNA_M-pyrifera_M_contig66338.16092.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig66338:912..1235- (Macrocystis pyrifera P11B4 male)
AACTCGCTCCCACTTCTTTTCTTCCGCAATGTTGTTTTTTCCCTCCGTGG
CACGCCTTCATGTTGTGCGGAAAAGGTGATCACCCAGCTCAAGATGCTTA
GCGCGCAGAACAAGCAGACTTCGACCGCTGCGCTCGAGGAGAGCCGCCCC
GCCTCCTCTCACCGCCGCTGTGTCAGCGAGAGCGTCATCGGTGTTGGTGG
CGGTGTTGGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGGTCGTCTGCGG
GAAGAAAGCATGCGGCGCACTCCCTGTTGACCCTGGCCCAGCTACAGTAC
AAGAGAGCGGCAGTTTCGAAGGTGAACTCGCTCCCACTTCTTTTCTTCCG
CAATGTTGTTTTTTCCCTCCGTGGCACGCCTTCATGTTGTGCGGAAAAGG
TGATCACCCAGCTCAAGATGCTTAGCGCGCAGAACAAGCAGACTTCGACC
GCTGCGCTCGAGGAGAGCCGCCCCGCCTCCTCTCACCGCCGCTGTGTCAG
CGAGAGCGTCATCGGTGTTGGTGGCGGTGTTGGTGTTGGTGGTGGTGGTG
GTGGTGGTGGTGGGTCGTCTGCGGGAAGAAAGCATGCGGCGCACTCCCTG
TTGACCCTGGCCCAGCTACAGTACAAGAGAGCGGCAGTTTCGAAGGTG
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