mRNA_M-pyrifera_M_contig66303.16090.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66303.16090.1
Unique NamemRNA_M-pyrifera_M_contig66303.16090.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 6.500e-22
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1
Query:   10 RPGDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVERRLEPQQLAAAR 180
            R GDR+VATSATLGD LWEKNTVDGILSAVGTRLVFS TVTLRVER L+ QQLAAAR
Sbjct:  323 RAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAAR 379          
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: A0A7S2V5A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.140e-11
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   16 GDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVERRLEPQQLAAAR 180
            GDRVVATSAT+GD LW+KNT++G++SA+ TR    +  TLR+ERR+  + L   R
Sbjct:  134 GDRVVATSATMGDQLWKKNTLEGVMSALNTRFFMGQAATLRLERRIAGEALVGFR 188          
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: A0A836CKM0_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.370e-11
Identity = 29/53 (54.72%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   16 GDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVERRLEPQQLAA 174
            GDRVVATSATLG  +WEKNT+DG++SA+ +RL+ S+ V +++ER L+  + A+
Sbjct:   89 GDRVVATSATLGGAMWEKNTIDGVISAITSRLILSDEVVIQLERYLDGHKTAS 141          
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: A0A0M0JSJ4_9EUKA (Pentatricopeptide repeat-containing protein chloroplastic-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JSJ4_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 3.510e-9
Identity = 25/46 (54.35%), Postives = 39/46 (84.78%), Query Frame = 1
Query:   10 RPGDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVER 147
            +PGD V+ATS T+GD LWEK++++G+L+A+ TRL   +TVT+R++R
Sbjct:   23 QPGDVVLATSGTVGDALWEKSSLEGVLAALSTRLALQQTVTVRLQR 68          
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: A0A8J2SI82_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SI82_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.530e-9
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   10 RPGDRVVATSATLGDGLWEKNTVDGILSAVGTRLVF-SETVTLRVERRLEPQQLAAA 177
            R GDRVVATSATLGD +W K+++ G++SAV +RL   ++ V+LR+ER L+  ++A A
Sbjct:  126 RAGDRVVATSATLGDAMWPKSSIAGVVSAVRSRLQLGNQKVSLRIERSLDDDEVALA 182          
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: A0A7S2P0X6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P0X6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.260e-8
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   16 GDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVERRLE 156
            GD +V TSAT+G+ +W K+T+DGI SA+ +R V S  +TLRV+R LE
Sbjct:   80 GDILVGTSATVGEQIWPKSTLDGIRSAISSRKVMSSAITLRVKRSLE 126          
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: A0A7S2DJQ5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DJQ5_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 7.960e-8
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   10 RPGDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVERR 150
            R GD VVATS T+GD LW+K+ ++G+LS++ TRL    +V LR++R+
Sbjct:   53 RAGDLVVATSGTVGDALWQKSNLEGVLSSISTRLALQPSVRLRLQRK 99          
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: A0A7S3JYF5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYF5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.060e-8
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   10 RPGDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVERRLEPQQLAAA 177
            R GDRV+ATSAT+GD +W K ++ G+ S+V +RL+   +V +R+ER L+  + A A
Sbjct:  117 RVGDRVIATSATIGDAMWPKKSLAGVESSVRSRLMARGSVKVRIERNLDESEAAVA 172          
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: A0A1Z9L3Z7_9SYNE (PDZ domain-containing protein n=1 Tax=Synechococcus sp. TMED187 TaxID=1986595 RepID=A0A1Z9L3Z7_9SYNE)

HSP 1 Score: 54.7 bits (130), Expect = 3.850e-7
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 GSRRPGDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVERRL 153
            G+ R GD VVATSA++GD +W K++V+GI +A+ TRL  S +V LR+ R +
Sbjct:  216 GAVRVGDVVVATSASVGDSMWRKSSVEGITAAISTRLSLSGSVRLRLSRSI 266          
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Match: A0A7S3S4Q6_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S4Q6_EMIHU)

HSP 1 Score: 52.4 bits (124), Expect = 6.560e-7
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   16 GDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVERRL 153
            GD VVATSA++GD +W   T++G+ SA+ TRL  S +VTLR+ R +
Sbjct:   17 GDSVVATSASVGDAMWPHRTLEGVSSAISTRLFTSPSVTLRLVRTM 62          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66303.16090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FTM8_ECTSI6.500e-2287.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V5A3_9STRA1.140e-1154.55Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CKM0_9STRA2.370e-1154.72PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A0M0JSJ4_9EUKA3.510e-954.35Pentatricopeptide repeat-containing protein chloro... [more]
A0A8J2SI82_9STRA3.530e-952.63Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S2P0X6_9STRA4.260e-855.32Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2DJQ5_9EUKA7.960e-851.06Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S3JYF5_9STRA8.060e-846.43Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1Z9L3Z7_9SYNE3.850e-750.98PDZ domain-containing protein n=1 Tax=Synechococcu... [more]
A0A7S3S4Q6_EMIHU6.560e-752.17Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66303contigM-pyrifera_M_contig66303:308..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog2880.D7FTM8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.3278923-CDS-M-pyrifera_M_contig66303:307..4901622816553.3278923-CDS-M-pyrifera_M_contig66303:307..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66303 308..490 -
1692278043.0831418-CDS-M-pyrifera_M_contig66303:307..4901692278043.0831418-CDS-M-pyrifera_M_contig66303:307..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66303 308..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66303.16090.1prot_M-pyrifera_M_contig66303.16090.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66303 308..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66303.16090.1

>prot_M-pyrifera_M_contig66303.16090.1 ID=prot_M-pyrifera_M_contig66303.16090.1|Name=mRNA_M-pyrifera_M_contig66303.16090.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
GSRRPGDRVVATSATLGDGLWEKNTVDGILSAVGTRLVFSETVTLRVERR
LEPQQLAAAR*
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mRNA from alignment at M-pyrifera_M_contig66303:308..490-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66303.16090.1 ID=mRNA_M-pyrifera_M_contig66303.16090.1|Name=mRNA_M-pyrifera_M_contig66303.16090.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig66303:308..490- (Macrocystis pyrifera P11B4 male)
GGGTCGCGCAGACCTGGCGACCGAGTGGTGGCCACAAGCGCGACCCTTGG CGACGGCCTGTGGGAGAAGAACACGGTGGACGGCATACTCTCCGCGGTGG GAACGCGGCTGGTGTTTTCCGAAACCGTCACGCTGCGCGTCGAACGACGG CTGGAGCCGCAGCAGCTGGCCGCCGCGAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66303:308..490-

>mRNA_M-pyrifera_M_contig66303.16090.1 ID=mRNA_M-pyrifera_M_contig66303.16090.1|Name=mRNA_M-pyrifera_M_contig66303.16090.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig66303:308..490- (Macrocystis pyrifera P11B4 male)
GGGTCGCGCAGACCTGGCGACCGAGTGGTGGCCACAAGCGCGACCCTTGG
CGACGGCCTGTGGGAGAAGAACACGGTGGACGGCATACTCTCCGCGGTGG
GAACGCGGCTGGTGTTTTCCGAAACCGTCACGCTGCGCGTCGAACGACGG
CTGGAGCCGCAGCAGCTGGCCGCCGCGAGGTGAGGGTCGCGCAGACCTGG
CGACCGAGTGGTGGCCACAAGCGCGACCCTTGGCGACGGCCTGTGGGAGA
AGAACACGGTGGACGGCATACTCTCCGCGGTGGGAACGCGGCTGGTGTTT
TCCGAAACCGTCACGCTGCGCGTCGAACGACGGCTGGAGCCGCAGCAGCT
GGCCGCCGCGAGGTGA
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