mRNA_M-pyrifera_M_contig6624.16076.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 208 bits (530), Expect = 8.710e-66 Identity = 96/119 (80.67%), Postives = 107/119 (89.92%), Query Frame = 3
Query: 3 QFHPLFMGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNILG 359
Q+HPLFMGPDYIGPAVDHFQEI+AQ+PEFW FSLLGMA +EY +IT A+AEPSP+TGEGGLRD+Y+PGDLGFDPL LKPK L MQTKELNNGRLAMIGIAGMLVQELV+P +ILG
Sbjct: 103 QYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 201 bits (512), Expect = 4.570e-63 Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 3
Query: 3 QFHPLFMGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNILG 359
Q+HPLFMGPDYIGPAVDHFQEI+AQYPEFWVFSLLGMA +EY +I TAF PS +TGEGGL++DY PGDLGFDPL LKP+ + L M+TKELNNGRLAMIGIAGMLVQEL++P +ILG
Sbjct: 102 QYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 196 bits (497), Expect = 2.280e-61 Identity = 90/118 (76.27%), Postives = 103/118 (87.29%), Query Frame = 3
Query: 3 QFHPLFMGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNIL 356
++HP FMGPDYIGPAVDHFQEI+A++PEFW FSLL +AL+EY +IT A+AEPS +TGEGGLRD+Y+PGDLGFDPL LKP L TMQTKELNNGRLAMIGIAG LVQELV+P NIL
Sbjct: 57 EYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 194 bits (494), Expect = 1.160e-60 Identity = 90/119 (75.63%), Postives = 101/119 (84.87%), Query Frame = 3
Query: 3 QFHPLFMGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNILG 359
Q+HP FMGPDYIGPAVDHFQEI+AQ+PEFW FSLLGMA VEY +I TAF PS +TGEGGL++DY PGDLGFDPL LKP + L M+TKELNNGRLAMIGIAGML QELV+P +ILG
Sbjct: 78 QYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: A0A6H5L7D2_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE) HSP 1 Score: 187 bits (476), Expect = 4.830e-59 Identity = 89/112 (79.46%), Postives = 99/112 (88.39%), Query Frame = 3
Query: 21 MGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNIL 356
MGPDYIGPAVDHFQEI+A++PEFW FSLLGM L+EY +IT A+AEPS +TGEGGLRDDY+ GDLGFDPL LKPK L TMQTKELNNGRLAMIGIAGMLVQELV+ +NIL
Sbjct: 1 MGPDYIGPAVDHFQEISARFPEFWAFSLLGMVLIEYNTITKAYAEPSFVTGEGGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINIL 112
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 191 bits (485), Expect = 5.370e-59 Identity = 87/119 (73.11%), Postives = 101/119 (84.87%), Query Frame = 3
Query: 3 QFHPLFMGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNILG 359
Q+HP FMGPDYIGPAVDHFQEITA++P+FW +SLLGMA +EY +I A+AEPSP+TGEGGLRD+Y+PGDLGFDP +KPK L MQ KELNNGRLAMIGI GMLVQELV+ +ILG
Sbjct: 100 QYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 194 bits (493), Expect = 4.510e-58 Identity = 89/119 (74.79%), Postives = 101/119 (84.87%), Query Frame = 3
Query: 3 QFHPLFMGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNILG 359
Q+HP FMGPDYIGPAVDHFQEI+AQ+PEFW FSLLGMA +EY +I TAF PS +TGEGGL++DY PGDLGFDPL LKP + L M+TKELNNGRLAMIGIAGML QELV+P +ILG
Sbjct: 274 QYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 179 bits (454), Expect = 3.240e-54 Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 3
Query: 3 QFHPLFMGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNIL 356
++HPLFMG D+IGPA+ HFQEI+AQ+PEFW FSLLGMA +EY +I TAF PS +TGEGGL++DY PGDLGFDPL LKP + L M+TKELNNGRLAMIGIAGML QELV+ +IL
Sbjct: 102 EYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE) HSP 1 Score: 171 bits (434), Expect = 1.930e-52 Identity = 85/131 (64.89%), Postives = 96/131 (73.28%), Query Frame = 3
Query: 21 MGPDYIGPAVDHFQEITAQYPE------------------FWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNILG 359
MGPDYIGPAVDHFQEI+AQ+PE FW FSLLGMA +EY +I TAF PS +TGEGGL++DY PGDLGFDPL LKP + L M+TKELNNGRLAMIGIAGML QELV+P +ILG
Sbjct: 1 MGPDYIGPAVDHFQEISAQFPEPFPLCTFLPAIPVSPQPQFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 131
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 172 bits (437), Expect = 4.760e-51 Identity = 77/118 (65.25%), Postives = 96/118 (81.36%), Query Frame = 3
Query: 6 FHPLFMGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITGEGGLRDDYTPGDLGFDPLGLKPKTDEKLATMQTKELNNGRLAMIGIAGMLVQELVSPVNILG 359
FHPLF+GPDYIGPA+ HF+EITA++P+FW +LL +A +EY+ I FAE P+TGEGG+R DY PGDLGFDPLGL P+ + +L M+TKELN+GRLAMIGI GM+VQELV P+ I G
Sbjct: 154 FHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6624.16076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig6624.16076.1 >prot_M-pyrifera_M_contig6624.16076.1 ID=prot_M-pyrifera_M_contig6624.16076.1|Name=mRNA_M-pyrifera_M_contig6624.16076.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp MGPDYIGPAVDHFQEITAQYPEFWVFSLLGMALVEYKSITTAFAEPSPITback to top mRNA from alignment at M-pyrifera_M_contig6624:11542..13019- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig6624.16076.1 ID=mRNA_M-pyrifera_M_contig6624.16076.1|Name=mRNA_M-pyrifera_M_contig6624.16076.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1478bp|location=Sequence derived from alignment at M-pyrifera_M_contig6624:11542..13019- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig6624:11542..13019- >mRNA_M-pyrifera_M_contig6624.16076.1 ID=mRNA_M-pyrifera_M_contig6624.16076.1|Name=mRNA_M-pyrifera_M_contig6624.16076.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig6624:11542..13019- (Macrocystis pyrifera P11B4 male)back to top |