mRNA_M-pyrifera_M_contig66194.16067.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig66194.16067.1
Unique Name	mRNA_M-pyrifera_M_contig66194.16067.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: A0A1X7TYF9_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TYF9_AMPQE)

HSP 1 Score: 72.4 bits (176), Expect = 2.520e-12
Identity = 40/124 (32.26%), Postives = 67/124 (54.03%), Query Frame = 1

Query:    4 FRKLLLMYKAARVICPRTISLYADAHAVELKGLLGFKFVTPELLLELKAELVYFPLVKNFPDLNISTRDFWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            F+ ++ ++KAAR   P+ I      HA +L  L    F+  + + ELK+EL  +       D  +   ++W  ++  LP W    ++++L+QPSSA +ER FS++ + FG +Q T L D  E S
Sbjct:  522 FKSIMAIFKAARYFSPQMIC-SLKPHASDLNQLACISFINSQAIEELKSELPKYMARAKDIDKEVCPLNWWKQNQDDLPVWSREAKKVFLLQPSSASVERVFSLLKSSFGDKQETALQDYIEAS 644

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: A0A2B4RAU9_STYPI (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RAU9_STYPI)

HSP 1 Score: 71.2 bits (173), Expect = 6.750e-12
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 1

Query:   25 YKAARVICPRTISLYADAHAVELKGLLGFKFVTPELLLELKAELVYFPLVKNFPD-LNISTRD----FWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            +KAAR+ CP  +    +  A  L+ L  F F   +  +   A+   FPL     D + ++  D    +W  HK  LP W  LV++L LIQPSSA  ER FS++ N FG+QQ + L D  E S
Sbjct: 1102 FKAARLCCPVQVQAL-NPTAASLEELRNFPFANHDATIANLAQ--EFPLYVAASDGVTVTCEDDKLTWWANHKDTLPHWSSLVKKLLLIQPSSASAERVFSLLTNAFGSQQESALQDYLEAS 1220

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: A0A432I446_9GAMM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A432I446_9GAMM)

HSP 1 Score: 69.7 bits (169), Expect = 2.200e-11
Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 1

Query:    1 KFRKLLLMYKAARVICPRTISLYADAHAVELKGLLGFKFVTPELLLELKAEL-VYFPLVKNFPDLNISTR-DFWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            +FR ++  +K AR+ CP  + L    +A  L+    F FV    +  L AEL  Y        DL+   +  +W A    LP W  LVR+L LIQPSSA  ER FS+++ +  +QQ   L D  E S
Sbjct:  488 QFRNIVRAFKVARLCCPVQVQLLIP-NAAALQEFKNFHFVDDNTIANLAAELPAYLAAADGIVDLSEEQKLAWWAARHHTLPHWASLVRKLLLIQPSSAASERVFSLLSTL-SSQQDNALEDYIEAS 612

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: A0A2B4S6X8_STYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S6X8_STYPI)

HSP 1 Score: 66.6 bits (161), Expect = 1.290e-10
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 1

Query:    1 KFRKLLLMYKAARVICPRTISLYADAHAVELKGLLGFKFVTPELLLELKAELVYFPLVKNFPDLNISTRD----FWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            +F  ++  +KAAR+ CP  +       AV ++ L  F F+T   +++L  EL  +  +       I T +    +W  H   LP W   V+++ L+QPSSA  ER FS++ N F  QQ   L +  E S
Sbjct:  130 QFHNVVRAFKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY--LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETS 255

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: UPI000C051ABC (uncharacterized protein LOC111330574 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C051ABC)

HSP 1 Score: 66.6 bits (161), Expect = 2.140e-10
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 1

Query:    1 KFRKLLLMYKAARVICPRTISLYADAHAVELKGLLGFKFVTPELLLELKAELVYFPLVKNFPDLNISTRD----FWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            +F  ++  +KAAR+ CP  +       AV ++ L  F F+T   +++L  EL  +  +       I T +    +W  H   LP W   V+++ L+QPSSA  ER FS++ N F  QQ   L +  E S
Sbjct:  216 QFHNVVRAFKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY--LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETS 341

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: A0A2B4RB71_STYPI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RB71_STYPI)

HSP 1 Score: 66.6 bits (161), Expect = 2.640e-10
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 1

Query:    1 KFRKLLLMYKAARVICPRTISLYADAHAVELKGLLGFKFVTPELLLELKAELVYFPLVKNFPDLNISTRD----FWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            +F  ++  +KAAR+ CP  +       AV ++ L  F F+T   +++L  EL  +  +       I T +    +W  H   LP W   V+++ L+QPSSA  ER FS++ N F  QQ   L +  E S
Sbjct:  495 QFHNVVRAFKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY--LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETS 620

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: A0A2B4S074_STYPI (Waprin-Phi3 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S074_STYPI)

HSP 1 Score: 66.6 bits (161), Expect = 2.780e-10
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 1

Query:    1 KFRKLLLMYKAARVICPRTISLYADAHAVELKGLLGFKFVTPELLLELKAELVYFPLVKNFPDLNISTRD----FWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            +F  ++  +KAAR+ CP  +       AV ++ L  F F+T   +++L  EL  +  +       I T +    +W  H   LP W   V+++ L+QPSSA  ER FS++ N F  QQ   L +  E S
Sbjct:  958 QFHNVVRAFKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY--LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETS 1083

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: A0A2B4R5H2_STYPI (Uncharacterized protein K02A2.6 n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R5H2_STYPI)

HSP 1 Score: 66.6 bits (161), Expect = 2.820e-10
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 1

Query:    1 KFRKLLLMYKAARVICPRTISLYADAHAVELKGLLGFKFVTPELLLELKAELVYFPLVKNFPDLNISTRD----FWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            +F  ++  +KAAR+ CP  +       AV ++ L  F F+T   +++L  EL  +  +       I T +    +W  H   LP W   V+++ L+QPSSA  ER FS++ N F  QQ   L +  E S
Sbjct: 1352 QFHNVVRAFKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY--LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETS 1477

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: A0A2B4SBT4_STYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SBT4_STYPI)

HSP 1 Score: 62.0 bits (149), Expect = 2.430e-9
Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = 1

Query:   25 YKAARVICPRTIS-LYADAHAVELKGLLGFKFVTPELLLELKAELVYFPLVKNFPDLNISTRD-----------FWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            +KAARV+CP  +  L      VE  G+  F F+  +  ++         LV+  P    +T+D           +W  H+++LP W   V+++ L+QPSSA  ER FS+++  F  QQ   L+D  + S
Sbjct:   56 FKAARVMCPMIVGWLRPTRTRVEALGI--FPFLDNDATID--------GLVRELPQYITATQDVPIECEGRKVEWWKVHEERLPNWSSAVKKVLLVQPSSAAAERVFSLLSASFHEQQENALSDYLQAS 174

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BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Match: A0A2B4RHQ8_STYPI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RHQ8_STYPI)

HSP 1 Score: 62.8 bits (151), Expect = 5.990e-9
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 1

Query:  211 FWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMNNIFGAQQTTVLTDLFELS 375
            +W  HK  LP W  LV++L LIQPSSA  ER FS++ N FG+QQ + L D  E S
Sbjct:  691 WWANHKDTLPHWSSLVKKLLLIQPSSASAERVFSLLTNAFGSQQESALQDYLEAS 745

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig66194.16067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1X7TYF9_AMPQE	2.520e-12	32.26	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am...	[more]
A0A2B4RAU9_STYPI	6.750e-12	37.70	Putative RNA-directed DNA polymerase from transpos...	[more]
A0A432I446_9GAMM	2.200e-11	36.22	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ga...	[more]
A0A2B4S6X8_STYPI	1.290e-10	31.78	Dimer_Tnp_hAT domain-containing protein n=1 Tax=St...	[more]
UPI000C051ABC	2.140e-10	31.78	uncharacterized protein LOC111330574 n=1 Tax=Stylo...	[more]
A0A2B4RB71_STYPI	2.640e-10	31.78	Dimer_Tnp_hAT domain-containing protein n=2 Tax=St...	[more]
A0A2B4S074_STYPI	2.780e-10	31.78	Waprin-Phi3 n=1 Tax=Stylophora pistillata TaxID=50...	[more]
A0A2B4R5H2_STYPI	2.820e-10	31.78	Uncharacterized protein K02A2.6 n=3 Tax=Stylophora...	[more]
A0A2B4SBT4_STYPI	2.430e-9	31.01	Dimer_Tnp_hAT domain-containing protein n=1 Tax=St...	[more]
A0A2B4RHQ8_STYPI	5.990e-9	52.73	Dimer_Tnp_hAT domain-containing protein n=2 Tax=St...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig66194	contig	M-pyrifera_M_contig66194:710..1084 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	375
Cds size	354
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816551.5740201-UTR-M-pyrifera_M_contig66194:709..730	1622816551.5740201-UTR-M-pyrifera_M_contig66194:709..730	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig66194 710..730 +
1692278041.978267-UTR-M-pyrifera_M_contig66194:709..730	1692278041.978267-UTR-M-pyrifera_M_contig66194:709..730	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig66194 710..730 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816551.587368-CDS-M-pyrifera_M_contig66194:730..1084	1622816551.587368-CDS-M-pyrifera_M_contig66194:730..1084	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig66194 731..1084 +
1692278041.987724-CDS-M-pyrifera_M_contig66194:730..1084	1692278041.987724-CDS-M-pyrifera_M_contig66194:730..1084	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig66194 731..1084 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig66194.16067.1	prot_M-pyrifera_M_contig66194.16067.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig66194 731..1084 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig66194:710..1084+
coding sequence from alignment at M-pyrifera_M_contig66194:710..1084+

protein sequence of mRNA_M-pyrifera_M_contig66194.16067.1

>prot_M-pyrifera_M_contig66194.16067.1 ID=prot_M-pyrifera_M_contig66194.16067.1|Name=mRNA_M-pyrifera_M_contig66194.16067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MYKAARVICPRTISLYADAHAVELKGLLGFKFVTPELLLELKAELVYFPL
VKNFPDLNISTRDFWLAHKQQLPKWFGLVRRLWLIQPSSAIMERAFSVMN
NIFGAQQTTVLTDLFELS

mRNA from alignment at M-pyrifera_M_contig66194:710..1084+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig66194.16067.1 ID=mRNA_M-pyrifera_M_contig66194.16067.1|Name=mRNA_M-pyrifera_M_contig66194.16067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig66194:710..1084+ (Macrocystis pyrifera P11B4 male)
AAGTTCAGGAAGCTTCTTCTGATGTACAAGGCTGCGCGTGTGATCTGCCC
TCGCACCATCTCGCTATACGCCGATGCGCACGCAGTGGAGTTGAAGGGAT
TGCTTGGCTTCAAATTCGTGACCCCCGAGCTTCTGCTCGAGCTCAAGGCG
GAACTTGTCTACTTCCCTCTCGTCAAGAATTTTCCCGACCTCAACATCTC
TACCAGGGACTTCTGGCTCGCCCACAAGCAGCAGCTGCCCAAGTGGTTTG
GTCTGGTCCGTAGGCTATGGCTTATCCAGCCCTCATCGGCAATAATGGAG
CGCGCGTTCTCGGTAATGAACAACATCTTCGGCGCGCAGCAGACGACGGT
ACTGACCGATCTGTTCGAGCTGTCC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig66194:710..1084+

>mRNA_M-pyrifera_M_contig66194.16067.1 ID=mRNA_M-pyrifera_M_contig66194.16067.1|Name=mRNA_M-pyrifera_M_contig66194.16067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig66194:710..1084+ (Macrocystis pyrifera P11B4 male)
ATGTACAAGGCTGCGCGTGTGATCTGCCCTCGCACCATCTCGCTATACGC
CGATGCGCACGCAGTGGAGTTGAAGGGATTGCTTGGCTTCAAATTCGTGA
CCCCCGAGCTTCTGCTCGAGCTCAAGGCGGAACTTGTCTACTTCCCTCTC
GTCAAGAATTTTCCCGACCTCAACATCTCTACCAGGGACTTCTGGCTCGC
CCACAAGCAGCAGCTGCCCAAGTGGTTTGGTCTGGTCCGTAGGCTATGGC
TTATCCAGCCCTCATCGGCAATAATGGAGCGCGCGTTCTCGGTAATGAAC
AACATCTTCGGCGCGCAGCAGACGACGGTACTGACCGATCTGTTCGAGCT
GTCCATGTACAAGGCTGCGCGTGTGATCTGCCCTCGCACCATCTCGCTAT
ACGCCGATGCGCACGCAGTGGAGTTGAAGGGATTGCTTGGCTTCAAATTC
GTGACCCCCGAGCTTCTGCTCGAGCTCAAGGCGGAACTTGTCTACTTCCC
TCTCGTCAAGAATTTTCCCGACCTCAACATCTCTACCAGGGACTTCTGGC
TCGCCCACAAGCAGCAGCTGCCCAAGTGGTTTGGTCTGGTCCGTAGGCTA
TGGCTTATCCAGCCCTCATCGGCAATAATGGAGCGCGCGTTCTCGGTAAT
GAACAACATCTTCGGCGCGCAGCAGACGACGGTACTGACCGATCTGTTCG
AGCTGTCC