mRNA_M-pyrifera_M_contig65998.16024.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65998.16024.1
Unique NamemRNA_M-pyrifera_M_contig65998.16024.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: D8LTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT9_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 6.880e-44
Identity = 85/108 (78.70%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:    1 NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQAI-EGESPQTEETMDKSRAELAALERNFLERVAETSSKLKQGRG 321
            NRLIQEFKAGLLPLTDGTTLR FLSIMLNCDPMRISKKFVGSNCIGKQ          VFRRQQ + E  SP +EE MDKSRAELA LER FLERVAET+SKLKQG G
Sbjct:  130 NRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ----------VFRRQQGVDEDSSPLSEEAMDKSRAELAELERKFLERVAETTSKLKQGGG 227
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BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: A0A7S1D7J8_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7J8_CYCTE)

HSP 1 Score: 120 bits (301), Expect = 2.560e-32
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:    1 NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQAIEGESPQTEETMDKSRAELAALERNFLERVAETSSKLKQGRGTGAAS 336
            NRLIQEFKAGLLPLTDGTTLR FLS +LNCDPMRISKKFVGSNCIGKQ          VFRR+ A    +  T E + +SRAEL+ LER FLERVA+T+     G G G+AS
Sbjct:   12 NRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ----------VFRRRTA--DINRLTSEQIQQSRAELSELERRFLERVAQTNRVKSSGVG-GSAS 110
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BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: A0A7S2V6K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6K2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.920e-30
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    4 RLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQAIEGESPQTEETMDKSRAELAALERNFLERVAETS 297
            RLIQEFK+GLLPL DGTTLR FLS +LNC+PMRISKKFVGSNCIGKQ          VFRR+QA        E  +D+SR ELA LER FLERVA+T+
Sbjct:   35 RLIQEFKSGLLPLADGTTLRTFLSKLLNCEPMRISKKFVGSNCIGKQ----------VFRRRQADMDRLTPVE--IDRSRQELAELERRFLERVAQTA 120
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BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: A0A7S1U7I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7I4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.780e-30
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:    1 NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQA-IEGESPQTEETMDKSRAELAALERNFLERVAETSSKLK 309
            NRLIQEFK+GLLPLTDGTTLR FLS +LNCDPMRISKKFVG NCIGKQ          VFRR+QA ++  SP   E +++SR ELA LER FLERVA+ S+++K
Sbjct:   71 NRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQ----------VFRRRQADMDKLSP---EEIERSRRELAELERRFLERVAQ-STRIK 160
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BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: A0A7S4J6Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6Z5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 8.100e-30
Identity = 67/107 (62.62%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:    1 NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQAIEGESPQTEETMDKSRAELAALERNFLERVAETSSKLKQGRG 321
            NRLI EFKAGLLPLTDGTTLR FLS +LNCDPMRISKKFVGSNCIGKQ          VFRR+ A    +  T E + +SR EL+ LER FLERVA+T+     G G
Sbjct:   53 NRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ----------VFRRRTA--DINRLTPEQIQQSRQELSELERRFLERVAQTNRVKSSGVG 147
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BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: A0A6U0XNE9_9STRA (Hypothetical protein n=3 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XNE9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.660e-29
Identity = 68/99 (68.69%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQAIEGESPQTEETMDKSRAELAALERNFLERVAETS 297
            NRLIQEFK+GLLPLTDGTTLR FLS +LNCDPMRISKKFVGSNCIGKQ          VFRR+QA       T E +D+SR EL+ LER FLERVA+TS
Sbjct:  192 NRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ----------VFRRRQA--DMDRLTPEDIDRSRQELSDLERRFLERVAQTS 278
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BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: A0A448Z703_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z703_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.410e-29
Identity = 68/99 (68.69%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQAIEGESPQTEETMDKSRAELAALERNFLERVAETS 297
            NRLIQEFKAGLLPLTDGTTLR FLS +LNCDPMRISKKFVGSNCIGKQ          VFRR+ A    +  T E + KSRAEL+ LER FLERVA+T+
Sbjct:  116 NRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ----------VFRRRTA--DLNRLTPEQIQKSRAELSELERRFLERVAQTN 202
[Close]
BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: A0A1Z5JSJ9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSJ9_FISSO)

HSP 1 Score: 119 bits (298), Expect = 5.380e-29
Identity = 69/107 (64.49%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:    1 NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQAIEGESPQTEETMDKSRAELAALERNFLERVAETSSKLKQGRG 321
            NRLIQEFKAGLLPLTDGTTLR FLS +LNCDPMRISKKFVG NCIGKQ          VFRR+ A    +  T E + KSRAEL+ LER FLERVA+T+     G G
Sbjct:   90 NRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGGNCIGKQ----------VFRRRTA--DLNRLTPEQIQKSRAELSELERRFLERVAQTNRVKSSGVG 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: A0A1E7FJB7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJB7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.120e-29
Identity = 68/99 (68.69%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQAIEGESPQTEETMDKSRAELAALERNFLERVAETS 297
            NRLIQEFKAGLLPLTDGTTLR FLS +LNCDPMRISKKFVGSNCIGKQ          VFRR+ A    +  T E + KSRAEL+ LER FLERVA+T+
Sbjct:   61 NRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ----------VFRRRTA--DLNRLTPEQIQKSRAELSDLERRFLERVAQTN 147
[Close]
BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Match: A0A7R9UAE4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAE4_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.680e-28
Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 1 
Query:    1 NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQASGILFFIIFVFRRQQA-IEGESPQTEETMDKSRAELAALERNFLERVAETSSKLKQGRGTGAAS 336
            NRLIQEFK+GLLPLTDGTTLR FLS +LNCDPMRISKKFVG NCIGKQ          VFRR+QA ++  SP   E +++SR ELA LER FLERVA+ S+++K   G  ++S
Sbjct:  133 NRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQ----------VFRRRQADMDKLSP---EEIERSRRELAELERRFLERVAQ-STRIKGSGGKTSSS 231
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65998.16024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT9_ECTSI6.880e-4478.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1D7J8_CYCTE2.560e-3264.29Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2V6K2_9STRA2.920e-3065.31Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1U7I4_9STRA4.780e-3065.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4J6Z5_9STRA8.100e-3062.62Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A6U0XNE9_9STRA1.660e-2968.69Hypothetical protein n=3 Tax=Rhizochromulina marin... [more]
A0A448Z703_9STRA4.410e-2968.69Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5JSJ9_FISSO5.380e-2964.49Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A1E7FJB7_9STRA6.120e-2968.69Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7R9UAE4_9STRA1.680e-2861.95Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65998contigM-pyrifera_M_contig65998:193..1165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.8e-35
Seed eggNOG ortholog2880.D8LTT9
Hectar predicted targeting categoryother localisation
EggNOG OGs28HE3@1,2QPS9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.9062638-CDS-M-pyrifera_M_contig65998:192..3661622816548.9062638-CDS-M-pyrifera_M_contig65998:192..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65998 193..366 +
1692278040.5439842-CDS-M-pyrifera_M_contig65998:192..3661692278040.5439842-CDS-M-pyrifera_M_contig65998:192..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65998 193..366 +
1622816548.9207559-CDS-M-pyrifera_M_contig65998:997..11651622816548.9207559-CDS-M-pyrifera_M_contig65998:997..1165Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65998 998..1165 +
1692278040.555861-CDS-M-pyrifera_M_contig65998:997..11651692278040.555861-CDS-M-pyrifera_M_contig65998:997..1165Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65998 998..1165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65998.16024.1prot_M-pyrifera_M_contig65998.16024.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65998 193..1165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65998.16024.1

>prot_M-pyrifera_M_contig65998.16024.1 ID=prot_M-pyrifera_M_contig65998.16024.1|Name=mRNA_M-pyrifera_M_contig65998.16024.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
NRLIQEFKAGLLPLTDGTTLRNFLSIMLNCDPMRISKKFVGSNCIGKQAS
GILFFIIFVFRRQQAIEGESPQTEETMDKSRAELAALERNFLERVAETSS
KLKQGRGTGAASG*
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mRNA from alignment at M-pyrifera_M_contig65998:193..1165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65998.16024.1 ID=mRNA_M-pyrifera_M_contig65998.16024.1|Name=mRNA_M-pyrifera_M_contig65998.16024.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=973bp|location=Sequence derived from alignment at M-pyrifera_M_contig65998:193..1165+ (Macrocystis pyrifera P11B4 male)
AACAGGTTGATCCAGGAGTTCAAGGCCGGACTGTTGCCGCTTACCGACGG
AACAACGCTTAGGAATTTTCTGAGCATCATGCTCAACTGTGACCCAATGA
GAATATCGAAGAAGTTCGTGGGTTCGAACTGTATCGGGAAGCAGGCGAGT
GGTATTCTATTTTTCATAATTTTTGTTTTCATCCTATCCATTGTCTTTGT
TTGCCCTTTTTCGTCCTGCTCCCTCCGTAGTCCTACCTTAGATCCGGGGT
CACGGAGCAGGTCCCCCCCCCCCCCTCGATTAGTTCGGCACTGGCATCCA
TTTGCAACAAAGTCCGCCTCACAAGCGGCTTTGAGTGGGATGCAGCTCAC
CCTTCATGCGACTCGCCGAACACCTCACCGCGCTTCGCGCTTGGTGCATT
AAATGTCTGCCTGGTCGGTGAAAACCAGACGTCCTCCGTCCCGGCTTCGG
TGGTGCGTCTACCGTAATGCATGACATGAGATCCCCCCCCTCCCCTTCCC
CCAGCGCGCCGTGTTGTACTGTGATAAACGATAGCTCCTGCTTTGGTTTT
CCGGTGCCACCATCTGCCAATGACCCCGAGTCCTCAACGCCTACTCATAG
TATCCATGGATGATCGCTCGTCCCTCCCCCCCCCCACCGCTGTGCTGTGA
TAACGATACCTCCTGCTTTGGTTGCAGACGCCACCGTCAACCATTGCCCC
GTGTCAACAACGCCTACTCGTATTTTCCGGGGATGGTCGCTCGCTCCCCC
CCTCCCCCATTCCGCTGTGCTGTGCTGTGCTGTGATTACGATGACACCTG
CGCAGGTTTTCCGACGGCAGCAAGCAATTGAAGGCGAATCTCCCCAGACG
GAGGAGACTATGGATAAAAGCCGGGCGGAGCTAGCGGCGCTCGAGAGAAA
TTTCCTGGAACGCGTCGCGGAAACCTCGTCCAAGCTGAAGCAGGGGAGGG
GAACGGGAGCGGCAAGCGGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65998:193..1165+

>mRNA_M-pyrifera_M_contig65998.16024.1 ID=mRNA_M-pyrifera_M_contig65998.16024.1|Name=mRNA_M-pyrifera_M_contig65998.16024.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig65998:193..1165+ (Macrocystis pyrifera P11B4 male)
AACAGGTTGATCCAGGAGTTCAAGGCCGGACTGTTGCCGCTTACCGACGG
AACAACGCTTAGGAATTTTCTGAGCATCATGCTCAACTGTGACCCAATGA
GAATATCGAAGAAGTTCGTGGGTTCGAACTGTATCGGGAAGCAGGCGAGT
GGTATTCTATTTTTCATAATTTTTAACAGGTTGATCCAGGAGTTCAAGGC
CGGACTGTTGCCGCTTACCGACGGAACAACGCTTAGGAATTTTCTGAGCA
TCATGCTCAACTGTGACCCAATGAGAATATCGAAGAAGTTCGTGGGTTCG
AACTGTATCGGGAAGCAGGCGAGTGGTATTCTATTTTTCATAATTTTTGT
TTTCCGACGGCAGCAAGCAATTGAAGGCGAATCTCCCCAGACGGAGGAGA
CTATGGATAAAAGCCGGGCGGAGCTAGCGGCGCTCGAGAGAAATTTCCTG
GAACGCGTCGCGGAAACCTCGTCCAAGCTGAAGCAGGGGAGGGGAACGGG
AGCGGCAAGCGGGTAAGTTTTCCGACGGCAGCAAGCAATTGAAGGCGAAT
CTCCCCAGACGGAGGAGACTATGGATAAAAGCCGGGCGGAGCTAGCGGCG
CTCGAGAGAAATTTCCTGGAACGCGTCGCGGAAACCTCGTCCAAGCTGAA
GCAGGGGAGGGGAACGGGAGCGGCAAGCGGGTAA
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