mRNA_M-pyrifera_M_contig65969.16017.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65969.16017.1
Unique NamemRNA_M-pyrifera_M_contig65969.16017.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65969.16017.1 vs. uniprot
Match: A0A7S0JVT2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JVT2_CAFRO)

HSP 1 Score: 85.1 bits (209), Expect = 4.510e-17
Identity = 64/121 (52.89%), Postives = 88/121 (72.73%), Query Frame = 1 
Query:    1 LVKRVYQAFDSDRDGNLDVRELFHGLIRATRGSLEDRARFLFRXXXXXXXXXXXXXXXYRMLLFSQAKK-DLRHKDAQTVMALLDEDGNGCVSEDEFVAACLREGATLLHLFGRVFGRTGV 360
            L  RV++ FD+D  G++D+REL+ G++RATRGSLE+RA F   XXXXXXXXXXXXXXX  +LL++Q++K  +   DA+ V+  LD DGNG V   E+VAA +R   ++L    RVFG+TG+
Sbjct:  162 LAARVFRLFDADGGGSVDLRELYAGMLRATRGSLEERAEFFXXXXXXXXXXXXXXXXXKSLLLYAQSRKLAVTQDDARHVIRALDADGNGSVDLAEWVAA-IRRSPSVLRSVSRVFGQTGL 281
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BLAST of mRNA_M-pyrifera_M_contig65969.16017.1 vs. uniprot
Match: A0A5A8C3J4_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C3J4_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 1.850e-13
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:    1 LVKRVYQAFDSDRDGNLDVRELFHGLIRATRGSLEDRARFLFRXXXXXXXXXXXXXXXYRMLLFSQAKK-DLRHKDAQTVMALLDEDGNGCVSEDEFVAACLREGATLLHL 330
            L  RV++ FD+D  G++D+REL+ G++RATRGSLE+RA F   XXXXXXXXXXXXXXX  +LL++Q++K  +   DA+ V+  LD DGNG V   E+VAA  R  + L  L
Sbjct:  779 LAARVFRLFDADGGGSVDLRELYAGMLRATRGSLEERAEFFXXXXXXXXXXXXXXXXXKSLLLYAQSRKLAVTQDDARHVIRALDADGNGSVDLAEWVAAIRRSPSVLRSL 889
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BLAST of mRNA_M-pyrifera_M_contig65969.16017.1 vs. uniprot
Match: A0A5A8CYV4_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYV4_CAFRO)

HSP 1 Score: 73.9 bits (180), Expect = 6.220e-13
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    1 LVKRVYQAFDSDRDGNLDVRELFHGLIRATRGSLEDRARFLFRXXXXXXXXXXXXXXXYRMLLFSQAKK-DLRHKDAQTVMALLDEDGNGCVSEDEFVAACLREGATLLHL 330
            L  RV++ FD+D  G++D+REL+ G++RATRGSLE+RA F   XXXXXXXXXXXXXXX  +LL++Q++K  +   DA+ V+  LD DGNG V   E+V A  R  + L  L
Sbjct:  422 LAARVFRLFDADGGGSVDLRELYAGMLRATRGSLEERAEFFXXXXXXXXXXXXXXXXXKSLLLYAQSRKLAVTQDDARHVIRALDADGNGSVDLAEWVTAIRRSPSVLRSL 532
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BLAST of mRNA_M-pyrifera_M_contig65969.16017.1 vs. uniprot
Match: D7FII4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII4_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.190e-5
Identity = 32/99 (32.32%), Postives = 48/99 (48.48%), Query Frame = 1 
Query:   13 VYQAFDSDRDGNLDVRELFHGLIRATRGSLEDRARFLFRXXXXXXXXXXXXXXXYRMLL---FSQAKKDLRHKDAQTVMALLDEDGNGCVSEDEFVAAC 300
            ++Q FD DR G +DVRE    L      S +D+ +F F                 R+L     +Q++ ++  K   T+MA  D+DG+G V+ DEFV  C
Sbjct:  653 LFQLFDGDRSGQIDVREFMISLTNFAGASKDDKLKFAFMIFDEDGNGVITKQELARILKANHMAQSEAEVARK-TDTIMAQADKDGDGVVTFDEFVIVC 750
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65969.16017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S0JVT2_CAFRO4.510e-1752.89Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8C3J4_CAFRO1.850e-1353.15Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CYV4_CAFRO6.220e-1352.25Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
D7FII4_ECTSI1.190e-532.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65969contigM-pyrifera_M_contig65969:929..1288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816548.5185578-CDS-M-pyrifera_M_contig65969:928..12881622816548.5185578-CDS-M-pyrifera_M_contig65969:928..1288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65969 929..1288 +
1692278040.321897-CDS-M-pyrifera_M_contig65969:928..12881692278040.321897-CDS-M-pyrifera_M_contig65969:928..1288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65969 929..1288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65969.16017.1prot_M-pyrifera_M_contig65969.16017.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65969 929..1288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65969.16017.1

>prot_M-pyrifera_M_contig65969.16017.1 ID=prot_M-pyrifera_M_contig65969.16017.1|Name=mRNA_M-pyrifera_M_contig65969.16017.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
LVKRVYQAFDSDRDGNLDVRELFHGLIRATRGSLEDRARFLFRCFDADGS
GELDTSEVYRMLLFSQAKKDLRHKDAQTVMALLDEDGNGCVSEDEFVAAC
LREGATLLHLFGRVFGRTGV
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mRNA from alignment at M-pyrifera_M_contig65969:929..1288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65969.16017.1 ID=mRNA_M-pyrifera_M_contig65969.16017.1|Name=mRNA_M-pyrifera_M_contig65969.16017.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig65969:929..1288+ (Macrocystis pyrifera P11B4 male)
TTGGTGAAACGCGTATACCAAGCATTTGATTCTGATCGTGATGGAAACTT
GGATGTACGTGAATTGTTTCATGGTTTGATCCGTGCCACAAGAGGTTCAT
TGGAAGATAGAGCAAGATTCTTGTTTCGATGCTTTGATGCTGATGGCTCA
GGTGAATTGGACACGAGTGAAGTGTATCGCATGCTCTTGTTCAGTCAAGC
CAAGAAGGACTTGCGCCACAAAGATGCCCAAACTGTGATGGCATTGTTGG
ATGAAGATGGGAATGGGTGCGTGTCTGAGGATGAATTTGTAGCAGCTTGT
TTACGAGAAGGTGCCACTCTCCTCCACCTCTTCGGTCGTGTGTTTGGAAG
AACTGGAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65969:929..1288+

>mRNA_M-pyrifera_M_contig65969.16017.1 ID=mRNA_M-pyrifera_M_contig65969.16017.1|Name=mRNA_M-pyrifera_M_contig65969.16017.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig65969:929..1288+ (Macrocystis pyrifera P11B4 male)
TTGGTGAAACGCGTATACCAAGCATTTGATTCTGATCGTGATGGAAACTT
GGATGTACGTGAATTGTTTCATGGTTTGATCCGTGCCACAAGAGGTTCAT
TGGAAGATAGAGCAAGATTCTTGTTTCGATGCTTTGATGCTGATGGCTCA
GGTGAATTGGACACGAGTGAAGTGTATCGCATGCTCTTGTTCAGTCAAGC
CAAGAAGGACTTGCGCCACAAAGATGCCCAAACTGTGATGGCATTGTTGG
ATGAAGATGGGAATGGGTGCGTGTCTGAGGATGAATTTGTAGCAGCTTGT
TTACGAGAAGGTGCCACTCTCCTCCACCTCTTCGGTCGTGTGTTTGGAAG
AACTGGAGTGTTGGTGAAACGCGTATACCAAGCATTTGATTCTGATCGTG
ATGGAAACTTGGATGTACGTGAATTGTTTCATGGTTTGATCCGTGCCACA
AGAGGTTCATTGGAAGATAGAGCAAGATTCTTGTTTCGATGCTTTGATGC
TGATGGCTCAGGTGAATTGGACACGAGTGAAGTGTATCGCATGCTCTTGT
TCAGTCAAGCCAAGAAGGACTTGCGCCACAAAGATGCCCAAACTGTGATG
GCATTGTTGGATGAAGATGGGAATGGGTGCGTGTCTGAGGATGAATTTGT
AGCAGCTTGTTTACGAGAAGGTGCCACTCTCCTCCACCTCTTCGGTCGTG
TGTTTGGAAGAACTGGAGTG
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