mRNA_M-pyrifera_M_contig65907.16005.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65907.16005.1
Unique NamemRNA_M-pyrifera_M_contig65907.16005.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: T0PRP4_SAPDV (U-box domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PRP4_SAPDV)

HSP 1 Score: 59.7 bits (143), Expect = 1.740e-8
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1
Query:   25 CPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALR 225
            CPITH+V  DPV+T  GHSYERSA+EE +R+  E    G        P T  PLR    ++ N AL+
Sbjct:   10 CPITHDVMVDPVVTADGHSYERSAIEEWIRSSRETAPGGQ----VTSPVTNLPLR-STQLIPNLALK 71          
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: A0A067CZ91_SAPPC (U-box domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CZ91_SAPPC)

HSP 1 Score: 58.5 bits (140), Expect = 4.380e-8
Identity = 31/67 (46.27%), Postives = 38/67 (56.72%), Query Frame = 1
Query:   25 CPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALR 225
            CPITH+V  DPV+T  GHSYERSA+ E +RT  E    G        P T  PLR    ++ N AL+
Sbjct:   10 CPITHDVMADPVVTMDGHSYERSAIAEWIRTSRETAPGGQ----VTSPATNLPLR-SLQLIPNLALK 71          
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: A0A0D2K5U0_9CHLO (RING-type E3 ubiquitin transferase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2K5U0_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 5.380e-8
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 GGVPLAAHCPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALR 225
            G VP A  CP+T EVF+DPV+++ GH+YER+AL E       + K G W     DP TR P+    D+  N ++R
Sbjct:  250 GEVPSAFTCPLTMEVFRDPVVSKSGHTYERAALTE------HIAKVGGW-----DPITRIPMTL-ADVRPNISMR 312          
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: A0A2V0NKH4_9CHLO (RING-type E3 ubiquitin transferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NKH4_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 7.170e-8
Identity = 35/75 (46.67%), Postives = 41/75 (54.67%), Query Frame = 1
Query:    1 GGVPLAAHCPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALR 225
            G VP    CP+T EVF+DPV+TR G SYER AL E L            K GA DP TR+ +    D+  N ALR
Sbjct:  237 GEVPSCLVCPLTMEVFRDPVVTRCGRSYERQALLEHLA-----------KVGAWDPITRKKVD-AADVTPNVALR 299          
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: A0A067CS94_SAPPC (U-box domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CS94_SAPPC)

HSP 1 Score: 57.4 bits (137), Expect = 1.120e-7
Identity = 31/67 (46.27%), Postives = 38/67 (56.72%), Query Frame = 1
Query:   25 CPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALR 225
            CPITH+V  DPV+T  GHSYERSA+EE +RT  E    G        P T  PL     ++ N AL+
Sbjct:   10 CPITHDVMVDPVVTVDGHSYERSAIEEWIRTSHETAPGGQ----VTSPATNLPLG-STQLIPNLALK 71          
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: D8SKS5_SELML (RING-type E3 ubiquitin transferase n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKS5_SELML)

HSP 1 Score: 54.3 bits (129), Expect = 1.130e-6
Identity = 37/85 (43.53%), Postives = 44/85 (51.76%), Query Frame = 1
Query:    7 VPLAAHCPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALRDVCVAM----GW 249
            +P    C IT +VF+DPVIT  G SYER+ L E LR           K G  DP TR PL  P  IV+N AL++   A     GW
Sbjct:  203 IPEHLCCKITMDVFRDPVITPSGVSYERAVLLEHLR-----------KVGKFDPWTRAPLE-PEQIVSNLALKEAVQAYMLDHGW 275          
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: A0A067CNN4_SAPPC (U-box domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CNN4_SAPPC)

HSP 1 Score: 54.3 bits (129), Expect = 1.360e-6
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   25 CPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALR 225
            CPIT +V  DPV+T  GHSYERSA+ E +RT  E    G        P T  PLR    ++ N AL+
Sbjct:   10 CPITQDVMVDPVVTVDGHSYERSAIAEWIRTSRETAPGGQ----VTSPATNLPLR-SLQLIPNLALK 71          
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: A0A383VZW3_TETOB (RING-type E3 ubiquitin transferase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VZW3_TETOB)

HSP 1 Score: 53.9 bits (128), Expect = 1.580e-6
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 1
Query:    7 VPLAAHCPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALRD 228
            VP A  CP+T EVF++PVIT  G SYERSAL E L            K G  DP +R+P+    DI  N  LR+
Sbjct:  207 VPTAFTCPLTMEVFREPVITPSGCSYERSALLEHLA-----------KVGKFDPISRQPMS-EADITLNVGLRN 268          
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: B7G1K5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1K5_PHATC)

HSP 1 Score: 52.8 bits (125), Expect = 1.730e-6
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    7 VPLAAHCPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALR 225
            VP    CP+T  + +DPVI++YGHS+ER ++ E L   +++            P TR+PLR   D++TN  LR
Sbjct:   21 VPEDFICPLTLSLMQDPVISKYGHSFERESILEYLGRGSDIC-----------PCTRQPLRMR-DVITNHKLR 81          
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Match: A0A835XXB9_9CHLO (RING-type E3 ubiquitin transferase n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XXB9_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 4.000e-6
Identity = 30/72 (41.67%), Postives = 40/72 (55.56%), Query Frame = 1
Query:   10 PLAAHCPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWKQGARDPTTRRPLRWPGDIVTNRALR 225
            P    CP+T E+F+DPV+T  G SYER+AL E L+           K G  DP TR+P+     +V N +LR
Sbjct:  200 PSTFTCPLTMEIFRDPVVTPSGRSYERTALLEHLK-----------KVGRFDPITRQPMT-EAQVVPNVSLR 259          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65907.16005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T0PRP4_SAPDV1.740e-846.27U-box domain-containing protein n=1 Tax=Saprolegni... [more]
A0A067CZ91_SAPPC4.380e-846.27U-box domain-containing protein n=1 Tax=Saprolegni... [more]
A0A0D2K5U0_9CHLO5.380e-842.67RING-type E3 ubiquitin transferase n=1 Tax=Monorap... [more]
A0A2V0NKH4_9CHLO7.170e-846.67RING-type E3 ubiquitin transferase n=1 Tax=Raphido... [more]
A0A067CS94_SAPPC1.120e-746.27U-box domain-containing protein n=1 Tax=Saprolegni... [more]
D8SKS5_SELML1.130e-643.53RING-type E3 ubiquitin transferase n=6 Tax=Selagin... [more]
A0A067CNN4_SAPPC1.360e-644.78U-box domain-containing protein n=1 Tax=Saprolegni... [more]
A0A383VZW3_TETOB1.580e-645.95RING-type E3 ubiquitin transferase n=2 Tax=Scenede... [more]
B7G1K5_PHATC1.730e-638.36Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A835XXB9_9CHLO4.000e-641.67RING-type E3 ubiquitin transferase n=2 Tax=Edaphoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65907contigM-pyrifera_M_contig65907:746..1000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2e-07
Seed eggNOG ortholog112098.XP_008618450.1
KEGG koko:K05747
KEGG Pathwayko04062,ko04144,ko04520,ko04530,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,ko05231,map04062,map04144,map04520,map04530,map04666,map04810,map05100,map05130,map05131,map05132,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0167@1,KOG0167@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.920516-CDS-M-pyrifera_M_contig65907:745..10001622816547.920516-CDS-M-pyrifera_M_contig65907:745..1000Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65907 746..1000 -
1692278040.006839-CDS-M-pyrifera_M_contig65907:745..10001692278040.006839-CDS-M-pyrifera_M_contig65907:745..1000Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65907 746..1000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65907.16005.1prot_M-pyrifera_M_contig65907.16005.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65907 746..1000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65907.16005.1

>prot_M-pyrifera_M_contig65907.16005.1 ID=prot_M-pyrifera_M_contig65907.16005.1|Name=mRNA_M-pyrifera_M_contig65907.16005.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
GGVPLAAHCPITHEVFKDPVITRYGHSYERSALEEALRTDAEVTKSGDWK
QGARDPTTRRPLRWPGDIVTNRALRDVCVAMGWE*
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mRNA from alignment at M-pyrifera_M_contig65907:746..1000-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65907.16005.1 ID=mRNA_M-pyrifera_M_contig65907.16005.1|Name=mRNA_M-pyrifera_M_contig65907.16005.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig65907:746..1000- (Macrocystis pyrifera P11B4 male)
GGTGGAGTTCCATTGGCTGCGCATTGCCCAATCACCCACGAGGTATTCAA AGACCCAGTCATCACGCGCTATGGGCATTCGTATGAGCGCAGTGCTCTTG AAGAAGCACTACGCACCGATGCAGAAGTGACCAAAAGTGGGGATTGGAAA CAAGGTGCAAGAGATCCCACAACAAGAAGACCACTTCGGTGGCCCGGAGA CATTGTTACAAATCGAGCACTTCGTGATGTTTGTGTTGCAATGGGGTGGG AATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65907:746..1000-

>mRNA_M-pyrifera_M_contig65907.16005.1 ID=mRNA_M-pyrifera_M_contig65907.16005.1|Name=mRNA_M-pyrifera_M_contig65907.16005.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig65907:746..1000- (Macrocystis pyrifera P11B4 male)
GGTGGAGTTCCATTGGCTGCGCATTGCCCAATCACCCACGAGGTATTCAA
AGACCCAGTCATCACGCGCTATGGGCATTCGTATGAGCGCAGTGCTCTTG
AAGAAGCACTACGCACCGATGCAGAAGTGACCAAAAGTGGGGATTGGAAA
CAAGGTGCAAGAGATCCCACAACAAGAAGACCACTTCGGTGGCCCGGAGA
CATTGTTACAAATCGAGCACTTCGTGATGTTTGTGTTGCAATGGGGTGGG
AATGAGGTGGAGTTCCATTGGCTGCGCATTGCCCAATCACCCACGAGGTA
TTCAAAGACCCAGTCATCACGCGCTATGGGCATTCGTATGAGCGCAGTGC
TCTTGAAGAAGCACTACGCACCGATGCAGAAGTGACCAAAAGTGGGGATT
GGAAACAAGGTGCAAGAGATCCCACAACAAGAAGACCACTTCGGTGGCCC
GGAGACATTGTTACAAATCGAGCACTTCGTGATGTTTGTGTTGCAATGGG
GTGGGAATGA
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