mRNA_M-pyrifera_M_contig6586.15993.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6586.15993.1
Unique NamemRNA_M-pyrifera_M_contig6586.15993.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6586.15993.1 vs. uniprot
Match: D8LQ91_ECTSI (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ91_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.400e-20
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 LAKRTGIDPGDIKEWAVTDSVDTRAYFVAVDHCTRSVVLSIRGTYSVPDTMVDLLCNPV 177
            ++KRTG+DP D+KE A +DS++TR +FVAVDH +RSVV+SIRGTYS  DTMVDLLCN V
Sbjct:  176 ISKRTGVDPSDVKELATSDSLETRTHFVAVDHASRSVVISIRGTYSFTDTMVDLLCNTV 234
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BLAST of mRNA_M-pyrifera_M_contig6586.15993.1 vs. uniprot
Match: A0A835YZP1_9STRA (Intra-flagellar transport protein 57-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.590e-7
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 LAKRTGIDPGDIKEWAVTDSVDTRAYFVAVDHCTRSVVLSIRGTYSVPDTMVDLLCN 171
            ++ + GI   D+     TDSV+ R++FVAVDH ++SVV++IRGT S+ D+M+DLL +
Sbjct:  456 ISDQVGIAVEDVILIEPTDSVEMRSHFVAVDHNSKSVVVTIRGTMSIVDSMLDLLLD 512
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BLAST of mRNA_M-pyrifera_M_contig6586.15993.1 vs. uniprot
Match: D7FIB1_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIB1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.670e-6
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 LAKRTGIDPGDIKEWAVTDSVDTR--AYFVAVDHCTRSVVLSIRGTYSVPDTMVDLLCN 171
            +AK  GI   D+ +  +    +    AY + VDH T SVVLSIRGT+S+ DT+ DL+C+
Sbjct:   41 IAKHCGIQDSDLVKMNILGERELHMPAYVLTVDHATESVVLSIRGTFSMQDTVTDLVCD 99
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BLAST of mRNA_M-pyrifera_M_contig6586.15993.1 vs. uniprot
Match: A0A6H5JNB4_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB4_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.510e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 LAKRTGIDPGDIKEWAVTDSVDTR--AYFVAVDHCTRSVVLSIRGTYSVPDTMVDLLCN 171
            + K  GI   D+ +       +    AY + VDH T SVVLSIRGT+S+ DT+ DL+C+
Sbjct:  166 ITKHCGIQDSDLVKMNTLGERELHMPAYVLTVDHATESVVLSIRGTFSMQDTVTDLVCD 224
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BLAST of mRNA_M-pyrifera_M_contig6586.15993.1 vs. uniprot
Match: A0A2R5G8R4_9STRA (Lipase, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8R4_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.840e-5
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:   13 TGIDPGDIKEWAVTDSVDTRAYFVAVDHCTRSVVLSIRGTYSVPDTMVDLLCN 171
            TG+D  DI+    T       YFV VDH TR+VV++IRGT  + D + DL C 
Sbjct:  162 TGVDARDIRLVQDTSRTFRPGYFVCVDHVTRNVVVTIRGTMRLQDVVTDLSCE 214
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BLAST of mRNA_M-pyrifera_M_contig6586.15993.1 vs. uniprot
Match: UPI0006448E01 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448E01)

HSP 1 Score: 47.8 bits (112), Expect = 9.940e-5
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    1 LAKRTGIDPGDIKEWAVTDSVDTRAYFVAVDHCTRSVVLSIRGTYSVPDTMVDLLCN 171
            L + TGI   DI  +  T +     +FVA+DH T+S++LSIRGT+   D + DL+  
Sbjct:  267 LCEHTGIGKDDIICYRFTSTNFDPGHFVAIDHKTKSIILSIRGTFHARDILTDLVAT 323
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6586.15993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQ91_ECTSI3.400e-2069.49Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YZP1_9STRA2.590e-747.37Intra-flagellar transport protein 57-domain-contai... [more]
D7FIB1_ECTSI1.670e-644.07Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JNB4_9PHAE1.510e-542.37Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A2R5G8R4_9STRA3.840e-545.28Lipase, putative n=1 Tax=Hondaea fermentalgiana Ta... [more]
UPI0006448E019.940e-540.35hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6586contigM-pyrifera_M_contig6586:147..323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue9.7e-17
Seed eggNOG ortholog2880.D8LQ91
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrograde trans-synaptic signaling by lipid
EggNOG OGsKOG2088@1,KOG2088@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.3114588-CDS-M-pyrifera_M_contig6586:146..3231622816547.3114588-CDS-M-pyrifera_M_contig6586:146..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6586 147..323 -
1692278039.6639924-CDS-M-pyrifera_M_contig6586:146..3231692278039.6639924-CDS-M-pyrifera_M_contig6586:146..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6586 147..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6586.15993.1prot_M-pyrifera_M_contig6586.15993.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6586 147..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6586.15993.1

>prot_M-pyrifera_M_contig6586.15993.1 ID=prot_M-pyrifera_M_contig6586.15993.1|Name=mRNA_M-pyrifera_M_contig6586.15993.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
LAKRTGIDPGDIKEWAVTDSVDTRAYFVAVDHCTRSVVLSIRGTYSVPDT
MVDLLCNPV
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mRNA from alignment at M-pyrifera_M_contig6586:147..323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6586.15993.1 ID=mRNA_M-pyrifera_M_contig6586.15993.1|Name=mRNA_M-pyrifera_M_contig6586.15993.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig6586:147..323- (Macrocystis pyrifera P11B4 male)
CTCGCTAAGCGTACGGGCATCGACCCGGGCGATATTAAGGAGTGGGCCGT
GACGGACTCTGTTGACACTCGCGCTTATTTTGTGGCGGTCGACCACTGCA
CCCGATCCGTAGTGCTGAGCATTCGAGGCACCTACAGCGTGCCCGACACC
ATGGTCGACCTCCTGTGCAATCCAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6586:147..323-

>mRNA_M-pyrifera_M_contig6586.15993.1 ID=mRNA_M-pyrifera_M_contig6586.15993.1|Name=mRNA_M-pyrifera_M_contig6586.15993.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig6586:147..323- (Macrocystis pyrifera P11B4 male)
CTCGCTAAGCGTACGGGCATCGACCCGGGCGATATTAAGGAGTGGGCCGT
GACGGACTCTGTTGACACTCGCGCTTATTTTGTGGCGGTCGACCACTGCA
CCCGATCCGTAGTGCTGAGCATTCGAGGCACCTACAGCGTGCCCGACACC
ATGGTCGACCTCCTGTGCAATCCAGTGCTCGCTAAGCGTACGGGCATCGA
CCCGGGCGATATTAAGGAGTGGGCCGTGACGGACTCTGTTGACACTCGCG
CTTATTTTGTGGCGGTCGACCACTGCACCCGATCCGTAGTGCTGAGCATT
CGAGGCACCTACAGCGTGCCCGACACCATGGTCGACCTCCTGTGCAATCC
AGTG
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