mRNA_M-pyrifera_M_contig658.15984.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: D7G6A4_ECTSI (Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A4_ECTSI) HSP 1 Score: 348 bits (892), Expect = 1.540e-117 Identity = 178/248 (71.77%), Postives = 216/248 (87.10%), Query Frame = 1
Query: 1 MASQQPLRRLGLDEGIVARMTSEGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPE-TKTAGELLRERRETGSSFFVSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMPEQYGDFAPT--GLERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDYAKEETINRQDLLTRQAAVLK 735
MA QQPLRRLGLD+ +V+R+ S GLHT GD+FSKTELQLVQ+L+ ++ +VV LL V+ RI PE KTAG+LLRERRE G+SFFV+TG+ +D++LQGGFPTGMITELVGPAG+GKTQ CL +AAQACLP++LGGLGEDAGVVYLDTERKFSPDRLVEIAS R P YG+F+ +ERLLNQVTVF VD S+AL++RLE+LQ R+IE NVRLI+LDS+AALARRD+A+E+T++RQ+LLTRQAAVLK
Sbjct: 1 MAGQQPLRRLGLDDDLVSRLASAGLHTAGDMFSKTELQLVQSLDASREKVVELLDYVSTRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDALQGGFPTGMITELVGPAGIGKTQTCLQVAAQACLPAKLGGLGEDAGVVYLDTERKFSPDRLVEIASERHPGHYGEFSTEKGSMERLLNQVTVFPVDNSAALVDRLETLQARMIESNVRLIVLDSIAALARRDFAREDTLSRQELLTRQAAVLK 248
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: UPI0014581226 (DNA repair protein RAD51 homolog 2-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014581226) HSP 1 Score: 181 bits (460), Expect = 7.370e-52 Identity = 105/246 (42.68%), Postives = 157/246 (63.82%), Query Frame = 1
Query: 7 SQQPLRRLGLDEGIVARMTSEGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPETKTAGELLRERRETGSSFFVSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMPEQYGDFAPTGLERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDYAKE---ETINRQDLLTRQAAVLK 735
S + LRR+GL + ++ ++ +++ DL SKT+L+L++ L L F+V +++ +K AP+ +T EL +R+E G FF T LP +DN L GG PTG ITE+ GPAG GKTQ CLML Q LP LGGL V+Y+DTE FS +RLVEIA + P+ F L L +QV V T T ++L+ERL++++ II+ V+L+I+DS+A+L R++Y+ +R + L++QAA+LK
Sbjct: 2 SSKRLRRVGLSKEVLDCLSKNSIYSCKDLLSKTKLELLKFLGLGIFKVDEVVQLCSKACAPKPQTCLELWNKRKEKGCHFF-QTSLPDLDNVLHGGIPTGTITEISGPAGCGKTQFCLMLTVQCTLPLELGGLA--GNVLYIDTESAFSAERLVEIAQAKHPDL---FVGDKLVELTSQVFVDTQQTCASLMERLQTIEEEIIQKRVKLVIVDSMASLVRKEYSTSLGRNLTDRTNFLSQQAALLK 241
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: A0A1Y1ICX6_KLENI (Putative DNA repair protein RAD51 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ICX6_KLENI) HSP 1 Score: 176 bits (445), Expect = 1.920e-49 Identity = 104/242 (42.98%), Postives = 152/242 (62.81%), Query Frame = 1
Query: 40 EGIVA-RMTSEGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPETKTAGELLRERRETGSSFF---------VSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMPEQYGDFAPTGLERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDYAKEETINRQDLLTRQAAVLK 735
EG+VA R+ S L T D+ KTEL LV+ L+L V + ++++ +AP +T E+ ++++ G + T LP++D++L+GG P G ITELVGPAGVGKTQ CLML+ A LP+ +GGL D VY+DTE KFS RL+EIA+ R+P+ + D ++ L ++V V +++ LL RL+ L+ +I +LI+LDSVAAL R +Y ++ RQDLL RQAA+LK
Sbjct: 12 EGLVAHRLKSRRLETAKDVLCKTELDLVELLDLPADVVAKAVAAISQNVAPTRRTVLEMYMDQQQPGDIQGGHLHTDLPKLPTNLPSLDDALRGGVPLGSITELVGPAGVGKTQLCLMLSIFATLPTDIGGL--DGKCVYIDTENKFSAKRLIEIATMRLPDSFPD--EQAVQHLTSRVLVLRPNSAIDLLTRLQKLEEAMIREKAKLIVLDSVAALVRSEYGHDQLQQRQDLLGRQAALLK 249
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: UPI000B45859F (LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog 2-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45859F) HSP 1 Score: 172 bits (436), Expect = 7.730e-48 Identity = 103/246 (41.87%), Postives = 156/246 (63.41%), Query Frame = 1
Query: 7 SQQPLRRLGLDEGIVARMTSEGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPETKTAGELLRERRETGSSFFVSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMPEQYGDFAPTGLERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDYAKE---ETINRQDLLTRQAAVLK 735
S + LRR+GL +G++ ++ ++T DL SKT+L+L++ L L+ ++V ++ +K AP+ +T+ EL +R++ G FF T LP +D L GG P G ITE+ GPAG GKTQ CLML+ Q LP LGGL V+Y+DTE FS +RLVEIA + + F L L +QV V T T ++L++RLE+++ II V+LII+DS+A+L R++Y+ +R + L++QAA+LK
Sbjct: 2 SSKRLRRVGLGKGVLDCLSKNNIYTCKDLLSKTKLELLKFLGLSIYKVDEVVELCSKACAPKPRTSLELWNKRKQ-GCHFF-QTSLPDLDKVLHGGIPMGTITEISGPAGCGKTQFCLMLSVQCTLPLELGGLA--GNVLYIDTESAFSAERLVEIAQAKHRDL---FVEDKLVELTSQVYVDTQQTCASLMDRLETIEEDIIXKKVKLIIVDSIASLVRKEYSTSLGRNLTDRTNFLSKQAALLK 240
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: UPI0014555572 (DNA repair protein RAD51 homolog 2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014555572) HSP 1 Score: 168 bits (425), Expect = 9.370e-48 Identity = 99/248 (39.92%), Postives = 145/248 (58.47%), Query Frame = 1
Query: 1 MASQQPLRRLGLDEGIVARMTSEGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPETKTAGELLRERRETGSSFFVSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMPEQYGDFAPTGLERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDYAKEETIN---RQDLLTRQAAVLK 735
MAS++ ++RLGL+ +V R+ + T DL SKT L+L++ + + V+N+L+ ++ P TA +L E F T L +D+ L GG P G ITE+ GP G GKTQ C+MLA A LP +GGL D V Y+DTE F+ +RLVE+A R P + A L ++V ++ T S+LL RL+ L+ +I +RLIILDSVA+L R+++ N R +LL++QAA+LK
Sbjct: 1 MASRK-VQRLGLEPTVVERLKKHNVFTCQDLLSKTRLELLKITGMTEPRVINILQVSSEACLPRRTTALSMLTRTNEDECPAFFQTSLRQLDDVLHGGLPAGTITEIAGPPGCGKTQFCIMLALLATLPRAMGGL--DGAVAYIDTESAFTAERLVEVARCRFPNHFNQDA--SFVSLTSRVHIYLESTCSSLLSRLQHLEEELITKGIRLIILDSVASLVRKEFDSSHLSNLAARTNLLSKQAAILK 243
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: A0A2K1IF00_PHYPA (RECA_2 domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IF00_PHYPA) HSP 1 Score: 171 bits (433), Expect = 2.540e-47 Identity = 98/246 (39.84%), Postives = 156/246 (63.41%), Query Frame = 1
Query: 1 MASQQPLRRLGLDEGIVARMTSEGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPETKTAGELLRERRETGSSF-FVSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMPEQYGDFAPTGLERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDYAKEETINRQDLLTRQAAVLK 735
MAS L +GL++ I + + T + KTEL+LV+ L++ EV + L ++ ++ P + +L ER + ++F + TGL +D SL GG P G++TE+VGPAG+GKTQ C+ L+ A +P LGGL D V+Y+DTE+KF P+RL++IA +R P+ + + L++L +V + DT S L+ RL+ L+ I + VRL+++DSVAAL + +Y +++ I RQ+LL RQA++LK
Sbjct: 1 MASMS-LSSMGLNDSIAHIFRARNILTAKEALFKTELELVELLDVPFGEVQSALAIISAKVCPPCHSVFNILSERAKKEAAFGHLPTGLGALDESLWGGIPFGVMTEIVGPAGIGKTQFCITLSVLAAMPVELGGL--DGRVIYIDTEKKFRPERLLQIAKSRFPDHFT--SDQVLQQLAARVLMVQPDTVSELMLRLQGLEEAIRQHGVRLLVVDSVAALLQSEYGRDDIIRRQELLGRQASILK 241
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: A0A6P4YVG7_BRABE (DNA repair protein RAD51 homolog 2-like isoform X7 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YVG7_BRABE) HSP 1 Score: 167 bits (423), Expect = 8.830e-47 Identity = 99/247 (40.08%), Postives = 146/247 (59.11%), Query Frame = 1
Query: 7 SQQPLRRLGLDEGIVARMTS-EGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPETKTAGELLRERRETGSSFFVSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMPEQYGDFAPTGLERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDY---AKEETINRQDLLTRQAAVLK 735
S + LRRLGL+ +V R+ + L + D+ K L+L NLN +V ++ + ++ AP TA ++ + +GS+ F ST LP +D +L GG P G +TE+ GPAG GKTQ C+ML+ A LP +GGLG VVY+DTE FS +RLVE+A R P + + +L +QV V T S L RL+SL+ +IE VRL++LDSVA++ R+++ + R LL ++AA+LK
Sbjct: 2 SLRKLRRLGLEPELVDRLERHKKLSSCQDILVKVHLELQHLTNLNHSDVQKIVTATSRACAPTPTTALQMKQAGLSSGSAPFFSTSLPGLDQALHGGIPAGSVTEIAGPAGCGKTQFCIMLSVLATLPCEMGGLG--GAVVYIDTESAFSAERLVEVAQDRCPHHFSN--DDAFYKLTSQVYVHKTPTCSDLWNRLQSLEEELIEKRVRLVVLDSVASVVRKEFDNSLRGNLAQRVKLLAKEAALLK 244
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: A0A388L439_CHABU (RECA_2 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L439_CHABU) HSP 1 Score: 167 bits (423), Expect = 2.720e-46 Identity = 102/247 (41.30%), Postives = 145/247 (58.70%), Query Frame = 1
Query: 28 LGLDEGIVARMTSEGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPETKTAGELLRERRET---GSSFFVSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMP------EQYGDFAPTG--LERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDYAKEETINRQDLLTRQAAVLK 735
+GLD+ I+ R+T+ LHT D+ + EL L++ ++L L V++ + P +T EL+RE E G + T L +D++L GG P G ITELVGPAG+GKTQ C ML+ A LP GGLG V+Y+DTE KFS +RL EIA + E G G ++ L +V V +S ++ERL+ L+ +IE V+L+++DSVA+L R +Y E + RQ+LL RQAAVLK
Sbjct: 1 MGLDDAILRRLTARDLHTARDVLCRPELDLMEIVDLPADVQSQTLMHVSRAVCPPCRTVLELVREEDEASKAGRPRSLKTRLRAVDHALLGGIPLGAITELVGPAGIGKTQFCFMLSVFAILPVEWGGLG--GSVIYIDTENKFSSERLFEIAQHHIAAASPGEELSGSSDRLGGMMDHLGAKVVVVKPTSSGEVIERLQGLEEAVIERQVKLLVVDSVASLVRSEYGCENIVKRQELLGRQAAVLK 245
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: A0A6J8ED53_MYTCO (RAD51L1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8ED53_MYTCO) HSP 1 Score: 167 bits (422), Expect = 2.900e-46 Identity = 96/246 (39.02%), Postives = 146/246 (59.35%), Query Frame = 1
Query: 7 SQQPLRRLGLDEGIVARMTSEGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPETKTAGELLRERRETGSSFFVSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMPEQYGDFAPTGLERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDYAK---EETINRQDLLTRQAAVLK 735
S + LRR GL + I R+ + T D SK L+L++ L L + + N++++ K PE TA ELL R+ S F T LP +D L GG P G +TE+ GP+G GKTQ C+ML+ A LP+ +G L D V+Y+DTE FS +RLV++A + PE + L +L + V T S+L++RL SL+ II ++LI++DS+A+L R++Y+ + I+R + L++QAA+LK
Sbjct: 2 SNKKLRRAGLSKDITERLAVNNVFTCKDFLSKNNLELLKLLGLGYYSLQNVVKTCCKACVPEPVTALELLERRK---SKNFFKTTLPDLDIVLHGGIPMGTVTEIAGPSGCGKTQFCVMLSVVATLPANMGSL--DGCVMYIDTESAFSAERLVQVAQCKYPEYFSQ--EDSLLQLTRSIFVDVQQTCSSLIKRLTSLEEEIISKKIKLIVVDSIASLVRKEYSGSGGKSLIDRTNFLSQQAAILK 240
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Match: A0A6P4Z3S1_BRABE (DNA repair protein RAD51 homolog 2-like isoform X1 n=6 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z3S1_BRABE) HSP 1 Score: 167 bits (423), Expect = 6.940e-46 Identity = 99/247 (40.08%), Postives = 146/247 (59.11%), Query Frame = 1
Query: 7 SQQPLRRLGLDEGIVARMTS-EGLHTVGDLFSKTELQLVQALNLNQFEVVNLLRSVAKRIAPETKTAGELLRERRETGSSFFVSTGLPTIDNSLQGGFPTGMITELVGPAGVGKTQACLMLAAQACLPSRLGGLGEDAGVVYLDTERKFSPDRLVEIASTRMPEQYGDFAPTGLERLLNQVTVFTVDTSSALLERLESLQTRIIEGNVRLIILDSVAALARRDY---AKEETINRQDLLTRQAAVLK 735
S + LRRLGL+ +V R+ + L + D+ K L+L NLN +V ++ + ++ AP TA ++ + +GS+ F ST LP +D +L GG P G +TE+ GPAG GKTQ C+ML+ A LP +GGLG VVY+DTE FS +RLVE+A R P + + +L +QV V T S L RL+SL+ +IE VRL++LDSVA++ R+++ + R LL ++AA+LK
Sbjct: 2 SLRKLRRLGLEPELVDRLERHKKLSSCQDILVKVHLELQHLTNLNHSDVQKIVTATSRACAPTPTTALQMKQAGLSSGSAPFFSTSLPGLDQALHGGIPAGSVTEIAGPAGCGKTQFCIMLSVLATLPCEMGGLG--GAVVYIDTESAFSAERLVEVAQDRCPHHFSN--DDAFYKLTSQVYVHKTPTCSDLWNRLQSLEEELIEKRVRLVVLDSVASVVRKEFDNSLRGNLAQRVKLLAKEAALLK 244 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig658.15984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig658.15984.1 >prot_M-pyrifera_M_contig658.15984.1 ID=prot_M-pyrifera_M_contig658.15984.1|Name=mRNA_M-pyrifera_M_contig658.15984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp MASQQPLRRLGLDEGIVARMTSEGLHTVGDLFSKTELQLVQALNLNQFEVback to top mRNA from alignment at M-pyrifera_M_contig658:21514..24468+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig658.15984.1 ID=mRNA_M-pyrifera_M_contig658.15984.1|Name=mRNA_M-pyrifera_M_contig658.15984.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2955bp|location=Sequence derived from alignment at M-pyrifera_M_contig658:21514..24468+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig658:21514..24468+ >mRNA_M-pyrifera_M_contig658.15984.1 ID=mRNA_M-pyrifera_M_contig658.15984.1|Name=mRNA_M-pyrifera_M_contig658.15984.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig658:21514..24468+ (Macrocystis pyrifera P11B4 male)back to top |