mRNA_M-pyrifera_M_contig65492.15922.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65492.15922.1
Unique NamemRNA_M-pyrifera_M_contig65492.15922.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: A0A5A8CU33_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CU33_CAFRO)

HSP 1 Score: 85.1 bits (209), Expect = 2.020e-17
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 ADVRFVLTHLKEAISRTYGTVRAAYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVRAFTD 252
            +DV+FVL +L+   +    T+R A+R+MD DFSG IT+DEL  Q+RK+GMR T+ EL+ +  H+D+   G+ SF +F  AFTD
Sbjct:  677 SDVKFVLNNLRSKFADFSTTMRRAFRSMDKDFSGTITMDELETQLRKWGMRVTKQELVQIFNHYDRGDTGKWSFDDFCAAFTD 759          
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: A0A7J6M9U7_PEROL (EF-hand domain (C-terminal) containing n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M9U7_PEROL)

HSP 1 Score: 67.4 bits (163), Expect = 3.420e-11
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    4 ADVRFVLTHLKEAISRTYGTVRAAYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVRA 243
            +D+  +L  L+EA+ + +  VR  +R +D D +G +T+DE+ + +  +G + TEG+ L +MR FD   DG +S+ EF  A
Sbjct:  774 SDLTTILPKLREALLQQFPLVRDVFRRLDRDHNGVLTLDEVREVLANYGFQLTEGDALAIMRAFDTNKDGHISYNEFCDA 853          
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: A0A0G4HCV0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HCV0_9ALVE)

HSP 1 Score: 67.0 bits (162), Expect = 4.620e-11
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    7 DVRFVLTHLKEAISRTYGTVRAAYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVRAFTD 252
            +++ V+  L+E++ + +  VR  +R  D D +G +T  E A  + KFG   TE ELL +MRHFD   DG+VSF EF     D
Sbjct:  566 EIKSVIEKLRESVKQQFPLVRDMFRKFDRDHNGVMTKVEFASLLGKFGFILTEQELLTVMRHFDLNEDGQVSFNEFCDVILD 647          
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: A0A7J6M6Y9_PERCH (EF-hand domain (C-terminal) containing n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6M6Y9_PERCH)

HSP 1 Score: 66.6 bits (161), Expect = 6.380e-11
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    4 ADVRFVLTHLKEAISRTYGTVRAAYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVRA 243
            +D+R +L  L+EA+ + +  VR  +R  D D +G +T+ E+ + + KFG + TE + L +MR FD   DG +S+ EF  A
Sbjct:  764 SDLRAILAKLREALLQQFPLVRDVFRRFDRDHNGVLTLAEIREVLFKFGFQLTEADALAIMRAFDTNKDGHISYNEFCDA 843          
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: A0A7S1NPW9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NPW9_9EUGL)

HSP 1 Score: 58.9 bits (141), Expect = 1.380e-8
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   19 VLTHLKEAISRTYGTVRAAYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVR 240
            ++  LK  +   Y ++R A+ A+D+D SGFI+  E A  +R F M     ++  L+ HFD  GDG+VS  EF++
Sbjct:   93 IVNRLKSHLEARYHSMRDAFLALDTDRSGFISKKEFAAVLRTFNMGMDRQQVAALVDHFDTNGDGKVSHNEFLQ 166          
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: A0A820UND6_9BILA (Hypothetical protein n=3 Tax=Rotaria socialis TaxID=392032 RepID=A0A820UND6_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 1.420e-8
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   64 VRAAYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVRAF 246
            +RAA+R  D D SG+I   EL   M K G R  + E+  L++  DK+GD ++SF EFV+ F
Sbjct:   86 LRAAFRQFDQDNSGYIQAGELESIMAKMGKRFKKSEIDALLQSLDKDGDAKISFDEFVKLF 146          
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: A0A0G4EFQ3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EFQ3_VITBC)

HSP 1 Score: 59.7 bits (143), Expect = 1.720e-8
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   73 AYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVRAF 246
            A++A+D+D  G++TIDEL   +R +G+  TE +LL L+   DK  +GRVS+ +FV  F
Sbjct:  579 AFKAIDADQDGYLTIDELRNALRNYGVAVTERDLLALINRLDKSKNGRVSYGDFVSEF 636          
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: B8LR64_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LR64_PICSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   64 VRAAYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVRAFTDA 255
            +RA +   D D +G+IT  ELA  M + G   T  EL  +++  D +GDGR+SF EFV+A T A
Sbjct:   94 LRAIFHVFDRDGNGYITAAELAHSMARLGHALTVKELTGMIKEADTDGDGRISFAEFVKAITSA 157          
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: A0A803NWE2_CANSA (Uncharacterized protein n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NWE2_CANSA)

HSP 1 Score: 57.4 bits (137), Expect = 2.930e-8
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   64 VRAAYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVRAFTDA 255
            +R  +   D+D +G+IT  ELA  M K G   T  EL  +M   D++GDGR+ F+EFV A T A
Sbjct:   98 LRMMFEMFDTDGNGYITAAELAHSMAKLGHALTVDELAGMMNEADRDGDGRIDFEEFVTAITAA 161          
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Match: A0A0G4GBL8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GBL8_VITBC)

HSP 1 Score: 58.9 bits (141), Expect = 3.250e-8
Identity = 28/82 (34.15%), Postives = 43/82 (52.44%), Query Frame = 1
Query:    7 DVRFVLTHLKEAISRTYGTVRAAYRAMDSDFSGFITIDELAQQMRKFGMRTTEGELLVLMRHFDKEGDGRVSFQEFVRAFTD 252
            DV  V+  L+E +      VR  +R  D D +G +T +E  + M+KF     + E+  +MRHFD   DG+V++ EF     D
Sbjct:  575 DVTSVVEKLREGVKNQRPLVRDMFRLFDQDKNGVVTFEEFKKGMQKFAFNLPDEEIQAVMRHFDLNQDGKVTYTEFCDVLLD 656          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65492.15922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CU33_CAFRO2.020e-1748.19Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7J6M9U7_PEROL3.420e-1136.25EF-hand domain (C-terminal) containing n=4 Tax=Per... [more]
A0A0G4HCV0_9ALVE4.620e-1140.24Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7J6M6Y9_PERCH6.380e-1137.50EF-hand domain (C-terminal) containing n=1 Tax=Per... [more]
A0A7S1NPW9_9EUGL1.380e-837.84Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A820UND6_9BILA1.420e-844.26Hypothetical protein n=3 Tax=Rotaria socialis TaxI... [more]
A0A0G4EFQ3_VITBC1.720e-844.83Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
B8LR64_PICSI1.950e-843.75Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A803NWE2_CANSA2.930e-843.75Uncharacterized protein n=2 Tax=Cannabis sativa Ta... [more]
A0A0G4GBL8_VITBC3.250e-834.15Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65492contigM-pyrifera_M_contig65492:973..1227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.4
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog10224.XP_006822821.1
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Secreted protein acidic and rich in cysteine Ca binding region
EggNOG OGs3A20R@33154,3BR45@33208,3D7TI@33213,COG5126@1,KOG0027@2759
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.8769653-CDS-M-pyrifera_M_contig65492:972..12271622816542.8769653-CDS-M-pyrifera_M_contig65492:972..1227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65492 973..1227 -
1692278037.0394607-CDS-M-pyrifera_M_contig65492:972..12271692278037.0394607-CDS-M-pyrifera_M_contig65492:972..1227Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65492 973..1227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65492.15922.1prot_M-pyrifera_M_contig65492.15922.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65492 973..1227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65492.15922.1

>prot_M-pyrifera_M_contig65492.15922.1 ID=prot_M-pyrifera_M_contig65492.15922.1|Name=mRNA_M-pyrifera_M_contig65492.15922.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MADVRFVLTHLKEAISRTYGTVRAAYRAMDSDFSGFITIDELAQQMRKFG
MRTTEGELLVLMRHFDKEGDGRVSFQEFVRAFTDA
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mRNA from alignment at M-pyrifera_M_contig65492:973..1227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65492.15922.1 ID=mRNA_M-pyrifera_M_contig65492.15922.1|Name=mRNA_M-pyrifera_M_contig65492.15922.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig65492:973..1227- (Macrocystis pyrifera P11B4 male)
ATGGCAGACGTGCGATTCGTACTCACACATCTCAAAGAAGCTATCTCGCG AACGTATGGCACTGTGCGTGCAGCATACCGAGCAATGGACTCTGACTTTT CTGGATTCATCACCATTGACGAGCTTGCACAACAAATGCGCAAGTTCGGA ATGCGAACCACAGAAGGTGAGCTGCTTGTGCTCATGCGTCATTTTGACAA GGAAGGAGATGGTCGTGTCAGCTTCCAAGAATTCGTACGTGCGTTTACTG ATGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65492:973..1227-

>mRNA_M-pyrifera_M_contig65492.15922.1 ID=mRNA_M-pyrifera_M_contig65492.15922.1|Name=mRNA_M-pyrifera_M_contig65492.15922.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig65492:973..1227- (Macrocystis pyrifera P11B4 male)
ATGGCAGACGTGCGATTCGTACTCACACATCTCAAAGAAGCTATCTCGCG
AACGTATGGCACTGTGCGTGCAGCATACCGAGCAATGGACTCTGACTTTT
CTGGATTCATCACCATTGACGAGCTTGCACAACAAATGCGCAAGTTCGGA
ATGCGAACCACAGAAGGTGAGCTGCTTGTGCTCATGCGTCATTTTGACAA
GGAAGGAGATGGTCGTGTCAGCTTCCAAGAATTCGTACGTGCGTTTACTG
ATGCGATGGCAGACGTGCGATTCGTACTCACACATCTCAAAGAAGCTATC
TCGCGAACGTATGGCACTGTGCGTGCAGCATACCGAGCAATGGACTCTGA
CTTTTCTGGATTCATCACCATTGACGAGCTTGCACAACAAATGCGCAAGT
TCGGAATGCGAACCACAGAAGGTGAGCTGCTTGTGCTCATGCGTCATTTT
GACAAGGAAGGAGATGGTCGTGTCAGCTTCCAAGAATTCGTACGTGCGTT
TACTGATGCG
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