mRNA_M-pyrifera_M_contig65399.15909.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65399.15909.1
Unique NamemRNA_M-pyrifera_M_contig65399.15909.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65399.15909.1 vs. uniprot
Match: A0A6H5KIP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.610e-16
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QVAALVKVLRRGNIWCLNAGENYKVSLPTWWEFVEEMKSTNVT 129
            QV AL KVLRRGNIWCLNAGENYKV L TWW+FVE +K+TNVT
Sbjct:  735 QVGALAKVLRRGNIWCLNAGENYKVKLATWWQFVEAIKNTNVT 777
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BLAST of mRNA_M-pyrifera_M_contig65399.15909.1 vs. uniprot
Match: D7FZY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY3_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.280e-15
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 QVAALVKVLRRGNIWCLNAGENYKVSLPTWWEFVEEMKSTNVT 129
            QV AL KVL RGNIWCLNAGENYKV L TWW+FVE +K+TNVT
Sbjct:  363 QVEALAKVLGRGNIWCLNAGENYKVKLATWWQFVEAIKNTNVT 405
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BLAST of mRNA_M-pyrifera_M_contig65399.15909.1 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-10
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QVAALVKVLRRGNIWCLNAGENYKVSLPTWWEFVEEMKSTNVT 129
            Q+  L KVLRRGNIWCLNAGEN  ++   WW FVEE+K+T+VT
Sbjct:  277 QLRMLAKVLRRGNIWCLNAGENSGITPSAWWWFVEEIKTTSVT 319
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BLAST of mRNA_M-pyrifera_M_contig65399.15909.1 vs. uniprot
Match: A0A6H5JNB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB8_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.300e-10
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QVAALVKVLRRGNIWCLNAGENYKVSLPTWWEFVEEMKSTNVT 129
            Q+  L +VLRRG IWCLNAGEN ++   TWW FVEE+++TNVT
Sbjct:  647 QLMRLAEVLRRGLIWCLNAGENSEIKASTWWNFVEEIQNTNVT 689
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BLAST of mRNA_M-pyrifera_M_contig65399.15909.1 vs. uniprot
Match: A0A6H5JA48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA48_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.540e-9
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 QVAALVKVLRRGNIWCLNAGENYKVSLPTWWEFVEEMKSTNVT 129
            Q+  L KVLRRGNIWCLNAGEN K+   TW +FV+E+  T VT
Sbjct:  277 QIMMLAKVLRRGNIWCLNAGENSKIKPSTWRDFVKEIDKTGVT 319
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BLAST of mRNA_M-pyrifera_M_contig65399.15909.1 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.560e-9
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 QVAALVKVLRRGNIWCLNAGENYKVSLPTWWEFVEEMKSTNVT 129
            Q+  L KVLR+GNIWCLNAGEN K+   TW +FV+E+  T VT
Sbjct:  842 QLMMLAKVLRKGNIWCLNAGENSKIKPSTWCDFVKEIDKTGVT 884
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BLAST of mRNA_M-pyrifera_M_contig65399.15909.1 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.600e-9
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 QVAALVKVLRRGNIWCLNAGENYKVSLPTWWEFVEEMKSTNVT 129
            Q+  L +VLR+GNIWCLNAGEN K+   TW +FV+E++ T VT
Sbjct:  782 QLMMLARVLRKGNIWCLNAGENSKIKPSTWCDFVKEIEKTGVT 824
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BLAST of mRNA_M-pyrifera_M_contig65399.15909.1 vs. uniprot
Match: A0A7S2G2D6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2D6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.470e-6
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 QVAALVKVLRRGNIWCLNAGENYKVSLPTWWEFVEEMKSTNVT 129
            Q+  L KVL+ G IWCLN GENY+++   W +F + + +TNVT
Sbjct:  124 QLQKLSKVLQLGRIWCLNIGENYRITPGAWNQFADSLLATNVT 166
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65399.15909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KIP7_9PHAE3.610e-1681.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY3_ECTSI4.280e-1579.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFH6_ECTSI1.240e-1065.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNB8_9PHAE1.300e-1062.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA48_9PHAE1.540e-962.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7R7_9PHAE5.560e-960.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUR8_9PHAE7.600e-958.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G2D6_9STRA7.470e-648.84Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65399contigM-pyrifera_M_contig65399:1043..1171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue3.1e-12
Seed eggNOG ortholog2880.D7FZY3
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2BXB7@1,2S2EZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.152193-CDS-M-pyrifera_M_contig65399:1042..11711622816542.152193-CDS-M-pyrifera_M_contig65399:1042..1171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65399 1043..1171 -
1692278036.6474612-CDS-M-pyrifera_M_contig65399:1042..11711692278036.6474612-CDS-M-pyrifera_M_contig65399:1042..1171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65399 1043..1171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65399.15909.1prot_M-pyrifera_M_contig65399.15909.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65399 1043..1171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65399.15909.1

>prot_M-pyrifera_M_contig65399.15909.1 ID=prot_M-pyrifera_M_contig65399.15909.1|Name=mRNA_M-pyrifera_M_contig65399.15909.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
QVAALVKVLRRGNIWCLNAGENYKVSLPTWWEFVEEMKSTNVT
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mRNA from alignment at M-pyrifera_M_contig65399:1043..1171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65399.15909.1 ID=mRNA_M-pyrifera_M_contig65399.15909.1|Name=mRNA_M-pyrifera_M_contig65399.15909.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig65399:1043..1171- (Macrocystis pyrifera P11B4 male)
CAGGTGGCCGCGCTGGTGAAAGTTTTGCGTCGGGGTAACATCTGGTGTCT
AAACGCCGGCGAAAACTACAAGGTTAGCCTCCCCACGTGGTGGGAGTTCG
TGGAGGAGATGAAGAGCACGAATGTTACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65399:1043..1171-

>mRNA_M-pyrifera_M_contig65399.15909.1 ID=mRNA_M-pyrifera_M_contig65399.15909.1|Name=mRNA_M-pyrifera_M_contig65399.15909.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig65399:1043..1171- (Macrocystis pyrifera P11B4 male)
CAGGTGGCCGCGCTGGTGAAAGTTTTGCGTCGGGGTAACATCTGGTGTCT
AAACGCCGGCGAAAACTACAAGGTTAGCCTCCCCACGTGGTGGGAGTTCG
TGGAGGAGATGAAGAGCACGAATGTTACGCAGGTGGCCGCGCTGGTGAAA
GTTTTGCGTCGGGGTAACATCTGGTGTCTAAACGCCGGCGAAAACTACAA
GGTTAGCCTCCCCACGTGGTGGGAGTTCGTGGAGGAGATGAAGAGCACGA
ATGTTACG
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