mRNA_M-pyrifera_M_contig65383.15906.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65383.15906.1
Unique NamemRNA_M-pyrifera_M_contig65383.15906.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: A0A7M5X8V5_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X8V5_9CNID)

HSP 1 Score: 151 bits (382), Expect = 3.730e-40
Identity = 96/271 (35.42%), Postives = 148/271 (54.61%), Query Frame = 1
Query:   46 KVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVA-GIRAEKCDVTNTEDVARLVSMVESEYNGK-LHALVNNAGAASNGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMI--KTFVQSSRANFEACPEGVKKLFGLDYADRCNEALEEQLGRVAMDDVSVPTNCICKAVGSMNCGDRYYSGLLANTLFRIVSNFP 846
            K ++++GCD G G  TA  LSS    ++AGCLT +GA +L+ +     +A   DVT  +D+   V +VE E   K L+AL+NNAG          ++E   +V+ VN  GT+++TK FLPLL  +  SRIV +SS  G   L   +SYC SK+ VE ++  LR E+  F + V +I PG   T+++  KT     + N++   E +K+ +G  Y +  ++  E+ + ++A        + I  A  S N   RY  GL A+TL+  +S FP
Sbjct:   42 KTILITGCDSGFGYHTALDLSSAKCYILAGCLTKDGAYRLESDKKFNGKAFVMDVTKNDDITDAVKLVEKETENKGLYALINNAGIIRPSPIEWQTIEEMRRVMEVNFWGTVQVTKAFLPLLKKHGSSRIVNISSMAGRVLLGYSTSYCFSKYAVESFSDGLRYEMKPFGISVHLIEPGMYKTDILNPKTITNGLKKNWDETDEEMKEEYGEPYFNELSKRYEDLIEQIASPKFHQVVSAIHNATLSYNARARYVIGLDAHTLWMAISTFP 312          
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: A0A2P6NKZ2_9EUKA (Retinol dehydrogenase, retinaldehyde reductase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NKZ2_9EUKA)

HSP 1 Score: 142 bits (357), Expect = 1.110e-36
Identity = 92/268 (34.33%), Postives = 147/268 (54.85%), Query Frame = 1
Query:   25 PHYHGMGKVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVA-GIRAEKCDVTNTEDVARLVSMVESEYNGKLHALVNNAGAASNGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMIKTFVQSSRANFEACPEGVKKLFGLDYADRCNEALEEQLGRVAMDDVSVPTNCICKAVGSMNCGDRYYSGLLANTLF 825
            P     GK V++SGCD G GN T KQL +LGY V+AGCLT +GA KL  E +  +   + D+TN E VA+  ++VE   NGKL  +VNNAG ++       +    ++V  VN +G + M    +  ++   G RIV ++S  G     G+S+Y +SK   EGY+  LR E+++ DV+V+II PG  +T +++  +Q   + +E+  + VK  +G  + D+     +  L + + DD  +  + I  A+ +    DRY  G  A  ++
Sbjct:   24 PSLPADGKWVLISGCDTGFGNMTTKQLDALGYHVLAGCLTQDGAQKLSSECSKNVVTFQLDITNEESVAKTKALVEKHANGKLWGIVNNAGISAGTFVEWNTPAHYKRVHAVNFMGHVDMIYNNVHSIIKAKG-RIVNITSVAGFMAAPGMSAYASSKHAFEGYSDSLRREMYLRDVKVAIIEPGFMNTAIVQQALQPWISQWESLSQTVKDEYGQPWFDQMMANRKIALKKNS-DDPQLVVDSILHALTNSKPEDRYRPGFQAKLIY 289          
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: A0A1S3FHD4_DIPOR (short-chain dehydrogenase/reductase family 9C member 7 n=2 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3FHD4_DIPOR)

HSP 1 Score: 140 bits (353), Expect = 3.820e-36
Identity = 103/272 (37.87%), Postives = 146/272 (53.68%), Query Frame = 1
Query:   46 KVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVA-GIRAEKCDVTNTEDVARLVSMVESEYNGK-LHALVNNAGAA-SNGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMIKTFVQSSRAN--FEACPEGVKKLFGLDYADRCNEALEEQLGRVAMDDVSVPTNCICKAVGSMNCGDRYYSGLLANTLFRIVSNFP 846
            K V ++GCD G GN  AKQL   G  V+A CLT+EGA KLQ + +  ++    DVTNTE+V  +   V  +   + L ALVNNAG    +G     + E   KV+ VNL+G + +T   LPL+    G R+V MSS+GG   L G   YC SKFGVE ++  +R ELH F V+VSII PG   T+++ T    SR    ++  P+  +  +G +Y     + L+    R +   +S  TN I  A+ S +   RY  GL    L+  ++  P
Sbjct:   26 KYVFITGCDSGFGNLLAKQLVDRGMRVLAACLTEEGAQKLQQDTSYQLQTIILDVTNTENVKAVAQWVRDQVGEQGLWALVNNAGLGLPSGPNEWLTKEDFVKVINVNLVGLIDVTLHLLPLIKKARG-RVVNMSSSGGRVALIG-GGYCVSKFGVEAFSDSIRRELHFFGVKVSIIEPGNYRTSILGTEGMESRMQKLWDRLPQETRDSYGEEYFHAYTDNLKT-FARQSEPRISDVTNSIEHAIVSRSPRIRYNPGLDVKLLYLPLAKLP 294          
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: A0A1U7R5F4_MESAU (short-chain dehydrogenase/reductase family 9C member 7 n=1 Tax=Mesocricetus auratus TaxID=10036 RepID=A0A1U7R5F4_MESAU)

HSP 1 Score: 139 bits (351), Expect = 8.240e-36
Identity = 101/276 (36.59%), Postives = 146/276 (52.90%), Query Frame = 1
Query:   34 HGMGKVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVA-GIRAEKCDVTNTEDVARLVSMVESEYNGK-LHALVNNAGAA-SNGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMIKTFVQSSRAN--FEACPEGVKKLFGLDYADRCNEALEEQLGRVAMDDVSVPTNCICKAVGSMNCGDRYYSGLLANTLFRIVSNFP 846
            H   K V ++GCD G GN  A+QL   G  V+A CLT+EGA KLQ E +  ++    DVT TE +      V  +   + L ALVNNAG A  +G     + E   KV+ VNL+G + +T   LP+ V     R+V MSS+GG+  + G   YC SKFGVE ++  +R ELH F V+VSII PG   T+++      SR    ++  P+  ++ +G +Y     E L   L ++A   +S  TN +  A+ S +   RY  GL    L+  ++  P
Sbjct:   26 HLQDKYVFITGCDSGFGNLLARQLVDRGMRVLAACLTEEGAQKLQQETSYQLQTILLDVTKTESIKAAAQWVRDQVGEQGLWALVNNAGVALPSGPNEWLTKEDFVKVINVNLVGLIEVTLNMLPM-VKKARGRVVNMSSSGGLVAVIG-GGYCVSKFGVEAFSDSIRRELHFFGVKVSIIEPGNYRTSILGHEALQSRMKKLWDRLPQETRESYGEEYFQVYTEKLVN-LMQLAHPKISDVTNSMEHAIVSRSPRIRYNPGLDVKLLYIPLAKLP 298          
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: A0A670KD25_PODMU (17-beta-hydroxysteroid dehydrogenase type 6-like n=4 Tax=Podarcis muralis TaxID=64176 RepID=A0A670KD25_PODMU)

HSP 1 Score: 138 bits (347), Expect = 3.050e-35
Identity = 95/270 (35.19%), Postives = 143/270 (52.96%), Query Frame = 1
Query:   46 KVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVAG-IRAEKCDVTNTEDVARLVSMVESEYNGK-LHALVNNAGAA-SNGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMIKTFVQSSRANFEACPEGVKKLFGLDYADRCNEALEEQLGRVAMDDVSVPTNCICKAVGSMNCGDRYYSGLLANTLFRIVSNFP 846
            K V ++GCD G GN  A+QL + G  V+A CLT +GA +L    +  ++    DVT+ E VA     V+     K L  LVNNAG A  +G     + +   KV+ VNLLG + +T   +PL V     R+V +SST G   ++G   YC SKFGVE ++  LR ELH F VQVSII PGG  T +    +++ +  +   P  +K+++G  Y +   +  +  +  +A   + + T+C+  A+ S +   RY +G  A  L+     FP
Sbjct:   30 KFVFITGCDSGFGNLLARQLDARGLRVLAACLTQKGAEQLDKVTSERLKTSILDVTSKESVAAATEWVKGCIGSKGLWGLVNNAGTALPSGPNEWLTKDDFAKVINVNLLGMIDVTLHMVPL-VRRARGRVVNISSTNGRLAVFG-GGYCPSKFGVEAFSDSLRQELHPFGVQVSIIEPGGFQTTIAARALENLKNVWNRVPSDIKEVYGKQYLENYCKIAQYSIN-IASSKLHLVTDCMEHALTSCSPRTRYSAGWDAKLLYVPAFYFP 296          
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: A0A7E4VKG7_PANRE (Uncharacterized protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4VKG7_PANRE)

HSP 1 Score: 138 bits (348), Expect = 5.550e-35
Identity = 101/263 (38.40%), Postives = 135/263 (51.33%), Query Frame = 1
Query:   46 KVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVAGIRAEK----CDVTNTEDVARLVSMVES--EYNGKLHALVNNAGAAS-NGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMIKTFVQS---SRANFEACPEGVKKLFGLDYADRCNEALEEQLGRVAMDDVSVPTNCICKAVGSMNCGDRYYSG 804
            K V ++GCD G G A   +L   G  VIAGCLT+ GA  L  + AG+  +      DVT+ E V      VE   E   KL ALV NAG     G      +E+ +K   VN LGT+R    FLP L ++ G RIV M S+GG   +  LSSYC SKF +EGY  +LR E+  F++ V I+ PG   T + K   QS   S A ++A P   K ++G  Y  + + A  E L + A DD+S  T+    A+ +     RY  G
Sbjct:   57 KPVFITGCDSGFGKALVLKLLKNGIPVIAGCLTEAGAGTLTNDAAGLPGKLKTLIIDVTSEESVKAAAKTVEESLENGQKLWALVTNAGILIYEGVGEWVPIESYKKTFDVNTLGTVRAVNAFLPQLRESEG-RIVAMVSSGGRIAIPTLSSYCTSKFALEGYMDILRREVKQFNISVHILTPGRFKTGLTKA-TQSYPKSAAAWQALPTETKAVYGEGYLSKIDNAYYEVLEKDAYDDISAVTDAYYHALTARYPKLRYACG 317          
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: A0A0D2VTN6_CAPO3 (Short chain dehydrogenase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VTN6_CAPO3)

HSP 1 Score: 137 bits (344), Expect = 1.530e-34
Identity = 95/278 (34.17%), Postives = 148/278 (53.24%), Query Frame = 1
Query:    1 LVMFFNNVPHYHGMGKVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVAG-IRAEKCDVTNTEDVARLVSMVESEYNGKLHALVNNAGAASNGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMI-KTFVQSS-RANFEACPEGVKKLFGLDYADRCNEALEEQLGRVAMDDVSVPTNCICKAVGSMNCGDRYYSGLLANTLF 825
            LVM +         GKVV V+GCD G GN  A++L  L   V+AGCLT++GA+ L+ + +  ++    DVT+   VA++   ++S+ N KL  L+NNAG    G     SL   ++V  VN+ G + +TK  LP +  + G RIV + S  G      LS+YC SK+  E ++ VLR E+ VF V+VSII PG   T +I +  V ++   N+E+  + VK+ +G ++        +   G  A ++ S   + +  A+ +     RY  G  AN L+
Sbjct:   25 LVMLYLRSRRVDIAGKVVFVTGCDHGFGNLVARRLDELEVTVLAGCLTEQGASALREQSSSRLKTYILDVTDEASVAKVAQQLKSQ-NVKLWGLINNAGIMDGGPIETTSLAAYKRVSDVNVFGMISVTKALLPFIRASKG-RIVNVCSVAGRVSAMQLSAYCVSKYAAEAFSDVLRQEMAVFGVKVSIIEPGFFRTPLIDQARVNAALERNWESANDEVKEAYGSEFVLAMRGVSQRIFGAFASNNPSKVADGMVHAISAEYPRSRYIIGWDANLLW 300          
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: UPI000328FE24 (short-chain dehydrogenase/reductase family 9C member 7 n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI000328FE24)

HSP 1 Score: 135 bits (341), Expect = 2.210e-34
Identity = 101/276 (36.59%), Postives = 147/276 (53.26%), Query Frame = 1
Query:   46 KVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVA-GIRAEKCDVTNTEDVARLVSMVESEYNGK-LHALVNNAGAA-SNGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMI--KTFVQSSRANFEACPEGVKKLFGLDY----ADRCNEALEEQLGRVAMDDVSVPTNCICKAVGSMNCGDRYYSGLLANTLFRIVSNFP 846
            K V ++GCD G GN  A+QL   G  V+A CLT+EGA KLQ E +  ++    DVT TE +      V ++   + L ALVNNAG    +G     + E   KV+ VNL+G + +T   LP++    G RIV MSS+GG   L G   YC SKFGVE ++  +R ELH F V+V II PG   T+++  +      R  +E  P+  ++ +G +Y     D+ N +L+     +A   +S  TN +  A+ S +   RY  GL A  +F  ++  P
Sbjct:   26 KYVFITGCDSGFGNLLARQLVDRGMRVLAACLTEEGAQKLQQETSYRLQTILLDVTKTESIKAAAQWVRAQVGEQGLWALVNNAGVGVPSGPNEWLTKEDFVKVINVNLVGLIEVTLHMLPMIKKARG-RIVNMSSSGGRVALIG-GGYCVSKFGVEAFSDSIRRELHYFGVKVIIIEPGVYRTSILGRQNIEARMRKLWERLPQETRESYGEEYFRIYTDKLNNSLQ-----LAEPKISEVTNTMEHAIVSRSPRIRYNPGLDAKLVFVPLAKLP 294          
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: UPI0009E41E77 (short-chain dehydrogenase/reductase family 9C member 7-like isoform X2 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E41E77)

HSP 1 Score: 136 bits (342), Expect = 2.490e-34
Identity = 85/216 (39.35%), Postives = 121/216 (56.02%), Query Frame = 1
Query:   43 GKVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVAG-IRAEKCDVTNTEDVARLVSMVESEYNGK--LHALVNNAGAASNGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMIKTFVQSSRAN--FEACPEGVKKLFGLDY 675
            GK V+V+GCD G G  TA +L  +G  V+A CLT EG   L+  ++  +   + DVTN++ +  +   V+   +GK  L  LVNNAG  S G A    L   +KV  VNL G M +TK FLPL+    G R+VF+ S  G+      S YC +K+GVE +A  LR E+  F+VQVS+I PG T T M+   + +SR    ++  P   +  +G +Y
Sbjct:   32 GKFVLVTGCDSGFGRETAMKLDKMGVHVLATCLTKEGEQSLKSVMSDKLITFQMDVTNSQHIEEVFQKVKKLLDGKSGLWGLVNNAGMLSIGPAEWVPLADFKKVADVNLWGVMDVTKTFLPLVKKAKG-RVVFVGSVAGVVSPQAFSPYCITKYGVEAFADSLRREMRPFEVQVSVIQPGATQTPMLNDELLASRLKELWDNLPSDKRLEYGEEY 246          
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Match: UPI001592A4F9 (retinol dehydrogenase 7-like n=1 Tax=Zootoca vivipara TaxID=8524 RepID=UPI001592A4F9)

HSP 1 Score: 135 bits (340), Expect = 3.240e-34
Identity = 99/271 (36.53%), Postives = 139/271 (51.29%), Query Frame = 1
Query:   46 KVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGANKLQGEVAGIRAEKC--DVTNTEDVARLVSMVESEYNGK-LHALVNNAGAA-SNGQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGICPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMIKTFVQSSRANFEACPEGVKKLFGLDYADRCNEALEEQLGRVAMDDVSVPTNCICKAVGSMNCGDRYYSGLLANTLFRIVSNFP 846
            K V ++GCD G GN  A+QL + G  V+A CLT +GA +L G+    R +    DVT+TE VA     V+     K L  LVNNAG A  +G     + +   KV+ VNLLG + +T   +PL V     R+V + ST G    +G   YC SKFGVE ++  LR ELH+F VQVSI+ PGG  T +    V+  +  +   P  +K+ +G  Y +   +  +      A   + + T+CI  A+ S     RY  G  A  L+   S FP
Sbjct:   30 KYVFITGCDSGFGNLLARQLDAQGLHVLAACLTQKGAEQL-GKATSERLKTTILDVTSTESVAAATEWVKGCIGNKGLWGLVNNAGTALPSGPNEWLTKDDFAKVINVNLLGLIDVTLHMMPL-VRKARGRVVNVCSTMGRLAGFG-GGYCPSKFGVEAFSDSLRRELHLFGVQVSIVEPGGFQTTIFTQVVEDLKTLWNRVPSDIKEAYGEQYLENFCKFAQVSFN-AASSKLHLVTDCIEHALTSCYPRTRYSPGWDAKFLYLPASYFP 296          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65383.15906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M5X8V5_9CNID3.730e-4035.42Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A2P6NKZ2_9EUKA1.110e-3634.33Retinol dehydrogenase, retinaldehyde reductase n=1... [more]
A0A1S3FHD4_DIPOR3.820e-3637.87short-chain dehydrogenase/reductase family 9C memb... [more]
A0A1U7R5F4_MESAU8.240e-3636.59short-chain dehydrogenase/reductase family 9C memb... [more]
A0A670KD25_PODMU3.050e-3535.1917-beta-hydroxysteroid dehydrogenase type 6-like n... [more]
A0A7E4VKG7_PANRE5.550e-3538.40Uncharacterized protein n=1 Tax=Panagrellus redivi... [more]
A0A0D2VTN6_CAPO31.530e-3434.17Short chain dehydrogenase n=1 Tax=Capsaspora owcza... [more]
UPI000328FE242.210e-3436.59short-chain dehydrogenase/reductase family 9C memb... [more]
UPI0009E41E772.490e-3439.35short-chain dehydrogenase/reductase family 9C memb... [more]
UPI001592A4F93.240e-3436.53retinol dehydrogenase 7-like n=1 Tax=Zootoca vivip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65383contigM-pyrifera_M_contig65383:303..1148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score142.9
Seed ortholog evalue2.3e-31
Seed eggNOG ortholog9365.XP_007535037.1
Preferred nameSDR9C7
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004745,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0070013
EggNOG free text desc.retinol dehydrogenase activity
EggNOG OGs38BV4@33154,3BA6X@33208,3CSFV@33213,3J1PB@40674,4805J@7711,48ZM2@7742,KOG1610@1,KOG1610@2759
COG Functional cat.Q
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Exons1
Model size846
Cds size840
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.0257206-CDS-M-pyrifera_M_contig65383:302..11421622816542.0257206-CDS-M-pyrifera_M_contig65383:302..1142Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65383 303..1142 -
1692278036.582436-CDS-M-pyrifera_M_contig65383:302..11421692278036.582436-CDS-M-pyrifera_M_contig65383:302..1142Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65383 303..1142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.0379388-UTR-M-pyrifera_M_contig65383:1142..11481622816542.0379388-UTR-M-pyrifera_M_contig65383:1142..1148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65383 1143..1148 -
1692278036.6005163-UTR-M-pyrifera_M_contig65383:1142..11481692278036.6005163-UTR-M-pyrifera_M_contig65383:1142..1148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65383 1143..1148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65383.15906.1prot_M-pyrifera_M_contig65383.15906.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65383 303..1142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65383.15906.1

>prot_M-pyrifera_M_contig65383.15906.1 ID=prot_M-pyrifera_M_contig65383.15906.1|Name=mRNA_M-pyrifera_M_contig65383.15906.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=280bp
MFFNNVPHYHGMGKVVVVSGCDFGIGNATAKQLSSLGYMVIAGCLTDEGA
NKLQGEVAGIRAEKCDVTNTEDVARLVSMVESEYNGKLHALVNNAGAASN
GQALIASLETSEKVVTVNLLGTMRMTKMFLPLLVDNPGSRIVFMSSTGGI
CPLWGLSSYCASKFGVEGYARVLRDELHVFDVQVSIINPGGTDTNMIKTF
VQSSRANFEACPEGVKKLFGLDYADRCNEALEEQLGRVAMDDVSVPTNCI
CKAVGSMNCGDRYYSGLLANTLFRIVSNFP
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mRNA from alignment at M-pyrifera_M_contig65383:303..1148-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65383.15906.1 ID=mRNA_M-pyrifera_M_contig65383.15906.1|Name=mRNA_M-pyrifera_M_contig65383.15906.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig65383:303..1148- (Macrocystis pyrifera P11B4 male)
CTGGTCATGTTTTTCAACAACGTACCCCACTACCACGGAATGGGAAAGGT CGTTGTGGTGTCGGGATGTGACTTCGGAATCGGAAATGCTACTGCCAAGC AACTCAGTTCGCTTGGGTACATGGTGATCGCGGGATGCCTCACCGACGAA GGCGCCAACAAACTGCAAGGAGAAGTTGCCGGTATCAGGGCCGAAAAATG CGACGTCACCAACACGGAAGACGTGGCGCGCCTGGTGTCTATGGTGGAGA GCGAGTACAATGGGAAACTGCACGCCCTCGTCAACAATGCCGGGGCAGCA AGCAACGGCCAGGCCCTCATCGCCTCTTTGGAGACCTCGGAGAAGGTCGT CACGGTGAACCTCCTTGGCACTATGAGGATGACTAAGATGTTCCTCCCCC TTCTCGTGGATAATCCCGGGTCGAGGATCGTGTTCATGTCGTCTACCGGG GGGATCTGTCCGTTGTGGGGACTGTCCTCATACTGTGCATCCAAGTTCGG TGTCGAAGGGTACGCTCGCGTTCTTCGCGACGAGCTTCACGTGTTCGACG TCCAAGTGAGCATTATCAACCCCGGAGGCACCGACACCAACATGATAAAG ACTTTCGTGCAGTCATCCAGGGCCAATTTCGAGGCCTGCCCGGAAGGGGT GAAGAAGCTCTTTGGATTGGACTACGCCGACAGGTGCAACGAAGCATTGG AAGAACAGTTGGGTAGGGTTGCGATGGACGATGTCTCTGTGCCCACTAAC TGTATCTGCAAGGCCGTGGGGTCCATGAATTGTGGGGATAGGTACTACAG CGGGCTTTTGGCCAATACCCTGTTCCGCATTGTTTCGAATTTTCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65383:303..1148-

>mRNA_M-pyrifera_M_contig65383.15906.1 ID=mRNA_M-pyrifera_M_contig65383.15906.1|Name=mRNA_M-pyrifera_M_contig65383.15906.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1680bp|location=Sequence derived from alignment at M-pyrifera_M_contig65383:303..1148- (Macrocystis pyrifera P11B4 male)
ATGTTTTTCAACAACGTACCCCACTACCACGGAATGGGAAAGGTCGTTGT
GGTGTCGGGATGTGACTTCGGAATCGGAAATGCTACTGCCAAGCAACTCA
GTTCGCTTGGGTACATGGTGATCGCGGGATGCCTCACCGACGAAGGCGCC
AACAAACTGCAAGGAGAAGTTGCCGGTATCAGGGCCGAAAAATGCGACGT
CACCAACACGGAAGACGTGGCGCGCCTGGTGTCTATGGTGGAGAGCGAGT
ACAATGGGAAACTGCACGCCCTCGTCAACAATGCCGGGGCAGCAAGCAAC
GGCCAGGCCCTCATCGCCTCTTTGGAGACCTCGGAGAAGGTCGTCACGGT
GAACCTCCTTGGCACTATGAGGATGACTAAGATGTTCCTCCCCCTTCTCG
TGGATAATCCCGGGTCGAGGATCGTGTTCATGTCGTCTACCGGGGGGATC
TGTCCGTTGTGGGGACTGTCCTCATACTGTGCATCCAAGTTCGGTGTCGA
AGGGTACGCTCGCGTTCTTCGCGACGAGCTTCACGTGTTCGACGTCCAAG
TGAGCATTATCAACCCCGGAGGCACCGACACCAACATGATAAAGACTTTC
GTGCAGTCATCCAGGGCCAATTTCGAGGCCTGCCCGGAAGGGGTGAAGAA
GCTCTTTGGATTGGACTACGCCGACAGGTGCAACGAAGCATTGGAAGAAC
AGTTGGGTAGGGTTGCGATGGACGATGTCTCTGTGCCCACTAACTGTATC
TGCAAGGCCGTGGGGTCCATGAATTGTGGGGATAGGTACTACAGCGGGCT
TTTGGCCAATACCCTGTTCCGCATTGTTTCGAATTTTCCGATGTTTTTCA
ACAACGTACCCCACTACCACGGAATGGGAAAGGTCGTTGTGGTGTCGGGA
TGTGACTTCGGAATCGGAAATGCTACTGCCAAGCAACTCAGTTCGCTTGG
GTACATGGTGATCGCGGGATGCCTCACCGACGAAGGCGCCAACAAACTGC
AAGGAGAAGTTGCCGGTATCAGGGCCGAAAAATGCGACGTCACCAACACG
GAAGACGTGGCGCGCCTGGTGTCTATGGTGGAGAGCGAGTACAATGGGAA
ACTGCACGCCCTCGTCAACAATGCCGGGGCAGCAAGCAACGGCCAGGCCC
TCATCGCCTCTTTGGAGACCTCGGAGAAGGTCGTCACGGTGAACCTCCTT
GGCACTATGAGGATGACTAAGATGTTCCTCCCCCTTCTCGTGGATAATCC
CGGGTCGAGGATCGTGTTCATGTCGTCTACCGGGGGGATCTGTCCGTTGT
GGGGACTGTCCTCATACTGTGCATCCAAGTTCGGTGTCGAAGGGTACGCT
CGCGTTCTTCGCGACGAGCTTCACGTGTTCGACGTCCAAGTGAGCATTAT
CAACCCCGGAGGCACCGACACCAACATGATAAAGACTTTCGTGCAGTCAT
CCAGGGCCAATTTCGAGGCCTGCCCGGAAGGGGTGAAGAAGCTCTTTGGA
TTGGACTACGCCGACAGGTGCAACGAAGCATTGGAAGAACAGTTGGGTAG
GGTTGCGATGGACGATGTCTCTGTGCCCACTAACTGTATCTGCAAGGCCG
TGGGGTCCATGAATTGTGGGGATAGGTACTACAGCGGGCTTTTGGCCAAT
ACCCTGTTCCGCATTGTTTCGAATTTTCCG
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