mRNA_M-pyrifera_M_contig65361.15897.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65361.15897.1
Unique NamemRNA_M-pyrifera_M_contig65361.15897.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65361.15897.1 vs. uniprot
Match: D8LIU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU3_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.150e-34
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 DLPPNRVAELMWKATGIRKTGDQCRTRWTKVDDPSITKGAWTAKEDELLSSAVRERTTGDSPPPWVAVSE 210
            DLPPNRVAELMWKATGIRKTGDQCRTRWTKVD+PSITKGAW+  EDELL  AV E T  DSPPPWVA+SE
Sbjct:  314 DLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISE 383
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BLAST of mRNA_M-pyrifera_M_contig65361.15897.1 vs. uniprot
Match: A0A6H5JFS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.000e-33
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 DLPPNRVAELMWKATGIRKTGDQCRTRWTKVDDPSITKGAWTAKEDELLSSAVRERTTGDSPPPWVAVSE 210
            DLPPNRVAELMWKATGIRKTGDQCRTRWTKVD+PSITKGAW+  EDELL  AV E T  DSPPPWVA+SE
Sbjct:  142 DLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISE 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65361.15897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIU3_ECTSI3.150e-3484.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFS7_9PHAE2.000e-3384.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65361contigM-pyrifera_M_contig65361:918..1139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog2880.D8LIU3
KEGG rclassRC00027,RC00627,RC02743,RC02883,RC02949,RC02953
KEGG koko:K00166,ko:K09422
KEGG ReactionR07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008677,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-20_001560.1
EC1.2.4.4
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03000
Exons1
Model size222
Cds size192
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816541.5832174-UTR-M-pyrifera_M_contig65361:917..9471622816541.5832174-UTR-M-pyrifera_M_contig65361:917..947Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65361 918..947 +
1692278036.378762-UTR-M-pyrifera_M_contig65361:917..9471692278036.378762-UTR-M-pyrifera_M_contig65361:917..947Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65361 918..947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816541.5962155-CDS-M-pyrifera_M_contig65361:947..11391622816541.5962155-CDS-M-pyrifera_M_contig65361:947..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65361 948..1139 +
1692278036.3969557-CDS-M-pyrifera_M_contig65361:947..11391692278036.3969557-CDS-M-pyrifera_M_contig65361:947..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65361 948..1139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65361.15897.1prot_M-pyrifera_M_contig65361.15897.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65361 948..1139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65361.15897.1

>prot_M-pyrifera_M_contig65361.15897.1 ID=prot_M-pyrifera_M_contig65361.15897.1|Name=mRNA_M-pyrifera_M_contig65361.15897.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MWKATGIRKTGDQCRTRWTKVDDPSITKGAWTAKEDELLSSAVRERTTGD
SPPPWVAVSEGVG*
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mRNA from alignment at M-pyrifera_M_contig65361:918..1139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65361.15897.1 ID=mRNA_M-pyrifera_M_contig65361.15897.1|Name=mRNA_M-pyrifera_M_contig65361.15897.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig65361:918..1139+ (Macrocystis pyrifera P11B4 male)
GACTTGCCTCCTAACCGGGTGGCCGAGCTAATGTGGAAAGCTACGGGGAT
TCGCAAGACCGGAGACCAGTGCCGTACGCGATGGACAAAGGTTGACGACC
CCTCGATCACGAAGGGAGCGTGGACTGCGAAAGAGGATGAGCTGCTTTCC
AGTGCTGTCAGGGAGAGAACAACGGGCGACTCTCCCCCTCCGTGGGTAGC
GGTGAGTGAGGGGGTGGGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65361:918..1139+

>mRNA_M-pyrifera_M_contig65361.15897.1 ID=mRNA_M-pyrifera_M_contig65361.15897.1|Name=mRNA_M-pyrifera_M_contig65361.15897.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig65361:918..1139+ (Macrocystis pyrifera P11B4 male)
ATGTGGAAAGCTACGGGGATTCGCAAGACCGGAGACCAGTGCCGTACGCG
ATGGACAAAGGTTGACGACCCCTCGATCACGAAGGGAGCGTGGACTGCGA
AAGAGGATGAGCTGCTTTCCAGTGCTGTCAGGGAGAGAACAACGGGCGAC
TCTCCCCCTCCGTGGGTAGCGGTGAGTGAGGGGGTGGGGTAAATGTGGAA
AGCTACGGGGATTCGCAAGACCGGAGACCAGTGCCGTACGCGATGGACAA
AGGTTGACGACCCCTCGATCACGAAGGGAGCGTGGACTGCGAAAGAGGAT
GAGCTGCTTTCCAGTGCTGTCAGGGAGAGAACAACGGGCGACTCTCCCCC
TCCGTGGGTAGCGGTGAGTGAGGGGGTGGGGTAA
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