mRNA_M-pyrifera_M_contig65305.15883.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65305.15883.1
Unique NamemRNA_M-pyrifera_M_contig65305.15883.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65305.15883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65305contigM-pyrifera_M_contig65305:720..1212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816540.9023817-CDS-M-pyrifera_M_contig65305:719..11391622816540.9023817-CDS-M-pyrifera_M_contig65305:719..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65305 720..1139 +
1692278036.0399323-CDS-M-pyrifera_M_contig65305:719..11391692278036.0399323-CDS-M-pyrifera_M_contig65305:719..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65305 720..1139 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816540.912752-UTR-M-pyrifera_M_contig65305:1139..12121622816540.912752-UTR-M-pyrifera_M_contig65305:1139..1212Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65305 1140..1212 +
1692278036.0573797-UTR-M-pyrifera_M_contig65305:1139..12121692278036.0573797-UTR-M-pyrifera_M_contig65305:1139..1212Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65305 1140..1212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65305.15883.1prot_M-pyrifera_M_contig65305.15883.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65305 720..1139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65305.15883.1

>prot_M-pyrifera_M_contig65305.15883.1 ID=prot_M-pyrifera_M_contig65305.15883.1|Name=mRNA_M-pyrifera_M_contig65305.15883.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
LRCNRYPHRRVCARVCSLLPAFIVITTEQYPPFRWHVCHNSPQQHYLTVA
RAFPHRLRRKLSVLFSKLSTYLNTLHVCAIVTQHHLSVLRSLFKRHSNSN
PFLPPRHKHHTHLPTLPFRFAHYCTRLCGSSPMAIRQAP*
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mRNA from alignment at M-pyrifera_M_contig65305:720..1212+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65305.15883.1 ID=mRNA_M-pyrifera_M_contig65305.15883.1|Name=mRNA_M-pyrifera_M_contig65305.15883.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=493bp|location=Sequence derived from alignment at M-pyrifera_M_contig65305:720..1212+ (Macrocystis pyrifera P11B4 male)
CTTAGGTGCAACAGATATCCACACAGACGCGTGTGTGCACGTGTGTGTTC
GCTGTTGCCGGCATTCATTGTTATCACAACAGAGCAGTATCCGCCTTTCC
GTTGGCATGTCTGCCATAACAGCCCACAACAGCACTATTTGACAGTAGCG
CGTGCATTCCCACACCGCCTCCGCCGTAAGCTATCTGTTTTATTCTCCAA
GCTCAGTACCTATCTCAACACGCTCCATGTATGTGCCATCGTCACCCAAC
ACCACCTCTCCGTGCTCCGTTCACTCTTCAAACGCCATAGCAACTCCAAC
CCTTTCCTTCCACCCCGTCACAAGCACCACACGCACTTACCCACGCTCCC
GTTCCGCTTTGCCCACTACTGCACCCGTCTATGCGGTTCTTCTCCTATGG
CTATACGGCAAGCCCCTTGACCCTAAAAATGAGAAAACACGGGCCGCACA
AACCAAAAGGGGGAAAAAAACAGATCTAGAACAGCCATCCGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65305:720..1212+

>mRNA_M-pyrifera_M_contig65305.15883.1 ID=mRNA_M-pyrifera_M_contig65305.15883.1|Name=mRNA_M-pyrifera_M_contig65305.15883.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig65305:720..1212+ (Macrocystis pyrifera P11B4 male)
CTTAGGTGCAACAGATATCCACACAGACGCGTGTGTGCACGTGTGTGTTC
GCTGTTGCCGGCATTCATTGTTATCACAACAGAGCAGTATCCGCCTTTCC
GTTGGCATGTCTGCCATAACAGCCCACAACAGCACTATTTGACAGTAGCG
CGTGCATTCCCACACCGCCTCCGCCGTAAGCTATCTGTTTTATTCTCCAA
GCTCAGTACCTATCTCAACACGCTCCATGTATGTGCCATCGTCACCCAAC
ACCACCTCTCCGTGCTCCGTTCACTCTTCAAACGCCATAGCAACTCCAAC
CCTTTCCTTCCACCCCGTCACAAGCACCACACGCACTTACCCACGCTCCC
GTTCCGCTTTGCCCACTACTGCACCCGTCTATGCGGTTCTTCTCCTATGG
CTATACGGCAAGCCCCTTGACTTAGGTGCAACAGATATCCACACAGACGC
GTGTGTGCACGTGTGTGTTCGCTGTTGCCGGCATTCATTGTTATCACAAC
AGAGCAGTATCCGCCTTTCCGTTGGCATGTCTGCCATAACAGCCCACAAC
AGCACTATTTGACAGTAGCGCGTGCATTCCCACACCGCCTCCGCCGTAAG
CTATCTGTTTTATTCTCCAAGCTCAGTACCTATCTCAACACGCTCCATGT
ATGTGCCATCGTCACCCAACACCACCTCTCCGTGCTCCGTTCACTCTTCA
AACGCCATAGCAACTCCAACCCTTTCCTTCCACCCCGTCACAAGCACCAC
ACGCACTTACCCACGCTCCCGTTCCGCTTTGCCCACTACTGCACCCGTCT
ATGCGGTTCTTCTCCTATGGCTATACGGCAAGCCCCTTGA
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