mRNA_M-pyrifera_M_contig65278.15879.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65278.15879.1
Unique NamemRNA_M-pyrifera_M_contig65278.15879.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: A0A7S1T447_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T447_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 3.550e-26
Identity = 70/177 (39.55%), Postives = 88/177 (49.72%), Query Frame = 1
Query:   13 DKDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWLCAPC--HAACAHAIR-RRPGAPLPRHSHRPH--------DVACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPCGGSSLPLA 510
            D DA C VCG G S + + IV+CE CD+ VHQ CYGV AIP G+W C PC  H     A    RP    PR   +          D  C LCP +GGA   +A  +   +W H +C     R HP    L  +     D +VGL  V++   +  C+VCGS+ GVVVPC  S    A
Sbjct:   56 DADAVCVVCGEGASVSPNVIVYCERCDIGVHQRCYGVTAIPTGEWFCWPCAKHEEILEARGVPRPQIRPPRWQRKARSALEGGSLDTTCALCPNKGGAYRRTADGK---QWVHEVCA----RWHPEVSLL--EAPPGPDAIVGLGDVRAERWEQPCAVCGSSAGVVVPCEASGCSFA 223          
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: A0A2V0PFF9_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PFF9_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 2.350e-25
Identity = 69/174 (39.66%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   19 DATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWLCAPCHAACAHAIRR-------RP--------GAPLPRHSHRPHDVACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPCGGS 495
            D  CAVCG G S   + IVFCE CD+AVHQ+CYG+  +PEG+WLC PC    A    R       RP        GAP          V C LCPVR GA   S   +G  RW HL+C          HP +  +     D + GL +V+  L    C++C  AHG V  CG S
Sbjct:  777 DEVCAVCGDGASEAPNVIVFCERCDVAVHQACYGIAEVPEGEWLCWPCSLHEAQLRARGVPQPQIRPPRWATAGAGAPAAALEGGAGSVECALCPVRLGAFKRSR-EDG--RWCHLVCAH-------HHPEVVVEAGDICDAISGLGAVRPELAAAQCALCHRAHGAVARCGAS 940          
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: A0A2K1YI69_POPTR (Uncharacterized protein n=7 Tax=Saliceae TaxID=238069 RepID=A0A2K1YI69_POPTR)

HSP 1 Score: 107 bits (267), Expect = 1.560e-24
Identity = 57/173 (32.95%), Postives = 87/173 (50.29%), Query Frame = 1
Query:    1 REEEDKDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYG---VLAIPEGDWLCAPCHAACAHAIRRRPGAPLPRHSHRPHDVACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPCGGSSLPLA 510
            +EEED    CA+C   +    D IVFC+ CDL VH +CYG   +  +P+GDW C+ C A+ +    ++P             ++C LCP++GGAL P+A       WAH++C  L+       P + +++   ++ +V  S V     +  C VC S  G V+ C     PLA
Sbjct:  139 KEEEDDGILCAICQSTDGDPTDPIVFCDGCDLMVHTTCYGNPLIKGVPDGDWFCSQCLASKSDKETKQPS------------LSCCLCPIKGGALKPTATIGRDESWAHIVCALLI-------PEVFFEDPDGREGIV-YSKVPKRRWEEKCYVCKSRKGCVIDCSEPKCPLA 291          
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: A0A7S1G3S2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3S2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.840e-24
Identity = 58/158 (36.71%), Postives = 75/158 (47.47%), Query Frame = 1
Query:   13 DKDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWLCAPCHAACAHAIRRRPGAPLPRHSHRPHDVACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPC 486
            D DA C VC  G  T+ + I+FCE CD+AVHQ CYGV  +PE DW C PC                         V C LC   GGAL P+A     RRWAH+ CV+ +       P   ++ND + + VVGL +V +   +  C  C    G  + C
Sbjct:   24 DDDAVCVVCMDGTVTDGNEILFCEKCDVAVHQMCYGVAVVPEDDWYCTPCDM-----------------DEDVRTVRCALCKCDGGALKPTALVGRKRRWAHVACVNWV-------PGATFNNDDTLEEVVGLETVDAARFQLQCVSCKRRGGACIQC 157          
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: A0A146HAE5_MYCCL (Bromodomain and PHD finger-containing protein 3 (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HAE5_MYCCL)

HSP 1 Score: 106 bits (265), Expect = 7.530e-24
Identity = 56/158 (35.44%), Postives = 75/158 (47.47%), Query Frame = 1
Query:   16 KDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWLCAPCHAACAHAIRRRPGAPLPRHSHRPHDVACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPCG 489
            +D+TCA+C   E  N + IVFC+ C+LAVHQ CYGV  IPEG WLC  C  +  +                   V+C LCP  GGA   +   +    W HLLC   +       P     NDA  + ++G+ S+     K  CS+C S  G  + CG
Sbjct:   41 EDSTCAICDDAEGENSNAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRKCTVSPDNT------------------VSCLLCPNEGGAFKQTTQGQ----WVHLLCAIWV-------PETRVSNDAFMEPIIGVDSISKQRWKLKCSICPSHGGACIQCG 169          
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: A0A2P6U1C4_CHLSO (Peregrin isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1C4_CHLSO)

HSP 1 Score: 107 bits (268), Expect = 9.590e-24
Identity = 64/175 (36.57%), Postives = 88/175 (50.29%), Query Frame = 1
Query:    7 EEDKDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWLCAPC----HAACAHAIRR---RPGAPLPRHSHRPHD-----VACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSH---PHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPC 486
            E D++A CAVCG G S   + IVFC+ CD+AVHQ CYG+  +PEG+WLC PC    H   A  +     RP       + +P D     V C LCP++ GA     A +G +RW H  C   +     S+   P LG      ++ V GL  V+    +  C++CG   G V+ C
Sbjct:  822 EADQEAFCAVCGDGHSAAHNQIVFCDRCDVAVHQQCYGIAVVPEGEWLCEPCREYEHVLRAQGVPETDIRPPGHAEAVNRQPLDGGARSVRCALCPIKYGAF--KKAEDG-QRWVHSACALWMPETFLSYREVPGLG-----RQEFVAGLEKVKHDRLESRCAICGLTDGAVMGC 988          
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: A0A8H6RYP9_MYCCL (Bromodomain-containing protein n=2 Tax=Mycena chlorophos TaxID=658473 RepID=A0A8H6RYP9_MYCCL)

HSP 1 Score: 107 bits (266), Expect = 1.730e-23
Identity = 56/158 (35.44%), Postives = 75/158 (47.47%), Query Frame = 1
Query:   16 KDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWLCAPCHAACAHAIRRRPGAPLPRHSHRPHDVACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPCG 489
            +D+TCA+C   E  N + IVFC+ C+LAVHQ CYGV  IPEG WLC  C  +  +                   V+C LCP  GGA   +   +    W HLLC   +       P     NDA  + ++G+ S+     K  CS+C S  G  + CG
Sbjct:  132 EDSTCAICDDAEGENSNAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRKCTVSPDNT------------------VSCLLCPNEGGAFKQTTQGQ----WVHLLCAIWV-------PETRVSNDAFMEPIIGVDSISKQRWKLKCSICPSRGGACIQCG 260          
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: A0A8H6TFN1_9AGAR (Putative bromo domain and PHD finger-containing protein 3 n=1 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6TFN1_9AGAR)

HSP 1 Score: 106 bits (265), Expect = 2.360e-23
Identity = 60/165 (36.36%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   16 KDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWLCAPCHAACAHAIRRRPGAPLPRHSHRPHDVACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPCGGSSLPLA 510
            +D+TCA+C   E  N + IVFC+ C+LAVHQ CYGV  IPEG WLC  C  +        P  P          V+C LCP  GGA   +   +    WAHLLC   +       P     ND   + ++G+  +     K  CS+CG   G  + CG  S  LA
Sbjct:  132 EDSTCAICDDAEGENSNAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRKCTVS--------PENP----------VSCMLCPNEGGAFKQTPQGD----WAHLLCAIWV-------PETRVSNDTFMEPIIGVHQIVKQRWKLKCSICGLKMGACIQCGKQSCFLA 267          
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: A0A8H6WAT2_9AGAR (Bromodomain containing protein n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6WAT2_9AGAR)

HSP 1 Score: 106 bits (264), Expect = 3.200e-23
Identity = 59/157 (37.58%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   16 KDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWLCAPCHAACAHAIRRRPGAPLPRHSHRPHDVACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPC 486
            +D+TCAVC   E  N + IVFC+ C+LAVHQ CYGV  IPEG WLC  C  +        P  P          V+C LCP  GGA      ++G  +W HLLC   +       P     NDA  + ++G++++     K  CS+C S HG  + C
Sbjct:  131 EDSTCAVCDDPEGENSNAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRKCTVS--------PENP----------VSCILCPNEGGAF--KQTTQG--KWIHLLCAIWV-------PETRVSNDAFMEPIIGVNTIPKSRWKLRCSLCDSRHGACIQC 258          
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Match: UPI0004409A55 (uncharacterized protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI0004409A55)

HSP 1 Score: 105 bits (263), Expect = 4.360e-23
Identity = 60/165 (36.36%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   16 KDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWLCAPCHAACAHAIRRRPGAPLPRHSHRPHDVACTLCPVRGGALVPSAASEGPRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCSVCGSAHGVVVPCGGSSLPLA 510
            +D+TCA+C   E  N + IVFC+ C+LAVHQ CYGV  IPEG WLC  C  +        P  P          V+C LCP  GGA   + + +    WAHLLC   +       P     ND   + + G+  +     K  CS+CG   G  + C  SS  LA
Sbjct:  128 EDSTCAICDDAEGENANAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRKCTVS--------PENP----------VSCILCPNEGGAFKQTVSGD----WAHLLCAIWV-------PETRVANDVFMEPITGVDKINKQRWKLKCSLCGIREGACIQCSKSSCFLA 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65278.15879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1T447_9CHLO3.550e-2639.55Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A2V0PFF9_9CHLO2.350e-2539.66Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2K1YI69_POPTR1.560e-2432.95Uncharacterized protein n=7 Tax=Saliceae TaxID=238... [more]
A0A7S1G3S2_9STRA3.840e-2436.71Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A146HAE5_MYCCL7.530e-2435.44Bromodomain and PHD finger-containing protein 3 (F... [more]
A0A2P6U1C4_CHLSO9.590e-2436.57Peregrin isoform X1 n=1 Tax=Chlorella sorokiniana ... [more]
A0A8H6RYP9_MYCCL1.730e-2335.44Bromodomain-containing protein n=2 Tax=Mycena chlo... [more]
A0A8H6TFN1_9AGAR2.360e-2336.36Putative bromo domain and PHD finger-containing pr... [more]
A0A8H6WAT2_9AGAR3.200e-2337.58Bromodomain containing protein n=1 Tax=Mycena indi... [more]
UPI0004409A554.360e-2336.36uncharacterized protein n=1 Tax=Fomitiporia medite... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65278contigM-pyrifera_M_contig65278:563..1123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.5
Seed ortholog evalue7.1e-21
Seed eggNOG ortholog3694.POPTR_0011s10440.1
KEGG koko:K11380
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0009966,GO:0010646,GO:0023051,GO:0030111,GO:0048583,GO:0050789,GO:0050794,GO:0060828,GO:0065007
EggNOG free text desc.PHD-finger
EggNOG OGs37NK8@33090,3GGV1@35493,4JEKZ@91835,COG5141@1,KOG0955@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816540.6806006-CDS-M-pyrifera_M_contig65278:562..11231622816540.6806006-CDS-M-pyrifera_M_contig65278:562..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65278 563..1123 +
1692278035.9049764-CDS-M-pyrifera_M_contig65278:562..11231692278035.9049764-CDS-M-pyrifera_M_contig65278:562..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65278 563..1123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65278.15879.1prot_M-pyrifera_M_contig65278.15879.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65278 563..1123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65278.15879.1

>prot_M-pyrifera_M_contig65278.15879.1 ID=prot_M-pyrifera_M_contig65278.15879.1|Name=mRNA_M-pyrifera_M_contig65278.15879.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
REEEDKDATCAVCGGGESTNKDNIVFCESCDLAVHQSCYGVLAIPEGDWL
CAPCHAACAHAIRRRPGAPLPRHSHRPHDVACTLCPVRGGALVPSAASEG
PRRWAHLLCVSLLQRCHPSHPHLGYDNDASKDHVVGLSSVQSLLRKHSCS
VCGSAHGVVVPCGGSSLPLASSSHDCSHKSYVHVSCA
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mRNA from alignment at M-pyrifera_M_contig65278:563..1123+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65278.15879.1 ID=mRNA_M-pyrifera_M_contig65278.15879.1|Name=mRNA_M-pyrifera_M_contig65278.15879.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig65278:563..1123+ (Macrocystis pyrifera P11B4 male)
AGAGAAGAAGAAGATAAGGATGCAACTTGTGCTGTTTGTGGTGGTGGAGA GAGCACAAACAAGGACAATATTGTATTTTGTGAGAGTTGTGATTTAGCTG TGCATCAAAGTTGCTATGGAGTATTGGCAATTCCAGAAGGAGATTGGTTA TGTGCTCCTTGTCATGCTGCATGCGCACATGCCATTCGAAGACGTCCTGG TGCACCACTTCCACGACATTCTCATCGCCCACATGATGTTGCATGTACCT TATGTCCTGTACGAGGTGGAGCATTGGTCCCATCTGCAGCATCTGAAGGA CCTCGTCGTTGGGCACATTTGTTATGTGTGAGTTTGTTACAACGTTGTCA TCCATCTCATCCACATTTAGGATACGATAATGATGCATCCAAGGACCATG TGGTTGGTCTTTCAAGTGTACAATCTTTGTTGCGAAAACATTCATGTTCA GTGTGTGGTTCTGCACATGGGGTAGTTGTGCCTTGTGGAGGGTCATCTCT CCCTCTTGCTTCTTCTTCTCACGATTGTTCACACAAGTCATATGTCCATG TATCTTGTGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65278:563..1123+

>mRNA_M-pyrifera_M_contig65278.15879.1 ID=mRNA_M-pyrifera_M_contig65278.15879.1|Name=mRNA_M-pyrifera_M_contig65278.15879.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig65278:563..1123+ (Macrocystis pyrifera P11B4 male)
AGAGAAGAAGAAGATAAGGATGCAACTTGTGCTGTTTGTGGTGGTGGAGA
GAGCACAAACAAGGACAATATTGTATTTTGTGAGAGTTGTGATTTAGCTG
TGCATCAAAGTTGCTATGGAGTATTGGCAATTCCAGAAGGAGATTGGTTA
TGTGCTCCTTGTCATGCTGCATGCGCACATGCCATTCGAAGACGTCCTGG
TGCACCACTTCCACGACATTCTCATCGCCCACATGATGTTGCATGTACCT
TATGTCCTGTACGAGGTGGAGCATTGGTCCCATCTGCAGCATCTGAAGGA
CCTCGTCGTTGGGCACATTTGTTATGTGTGAGTTTGTTACAACGTTGTCA
TCCATCTCATCCACATTTAGGATACGATAATGATGCATCCAAGGACCATG
TGGTTGGTCTTTCAAGTGTACAATCTTTGTTGCGAAAACATTCATGTTCA
GTGTGTGGTTCTGCACATGGGGTAGTTGTGCCTTGTGGAGGGTCATCTCT
CCCTCTTGCTTCTTCTTCTCACGATTGTTCACACAAGTCATATGTCCATG
TATCTTGTGCAAGAGAAGAAGAAGATAAGGATGCAACTTGTGCTGTTTGT
GGTGGTGGAGAGAGCACAAACAAGGACAATATTGTATTTTGTGAGAGTTG
TGATTTAGCTGTGCATCAAAGTTGCTATGGAGTATTGGCAATTCCAGAAG
GAGATTGGTTATGTGCTCCTTGTCATGCTGCATGCGCACATGCCATTCGA
AGACGTCCTGGTGCACCACTTCCACGACATTCTCATCGCCCACATGATGT
TGCATGTACCTTATGTCCTGTACGAGGTGGAGCATTGGTCCCATCTGCAG
CATCTGAAGGACCTCGTCGTTGGGCACATTTGTTATGTGTGAGTTTGTTA
CAACGTTGTCATCCATCTCATCCACATTTAGGATACGATAATGATGCATC
CAAGGACCATGTGGTTGGTCTTTCAAGTGTACAATCTTTGTTGCGAAAAC
ATTCATGTTCAGTGTGTGGTTCTGCACATGGGGTAGTTGTGCCTTGTGGA
GGGTCATCTCTCCCTCTTGCTTCTTCTTCTCACGATTGTTCACACAAGTC
ATATGTCCATGTATCTTGTGCA
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