mRNA_M-pyrifera_M_contig65197.15865.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65197.15865.1
Unique NamemRNA_M-pyrifera_M_contig65197.15865.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65197.15865.1 vs. uniprot
Match: A0A5A8C3G3_CAFRO (Casc1_N domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C3G3_CAFRO)

HSP 1 Score: 109 bits (273), Expect = 1.940e-23
Identity = 90/279 (32.26%), Postives = 132/279 (47.31%), Query Frame = 1
Query:    4 VGGVIAVELLEPPDETTTVKRWEMEVVGPLTNT-ILRRPHPAEGQGMEGALTVRVQVKDDILVPEDVRVAYWSGALDRWMEEEDNQVGWDTE-TRILQFKSTRCVALAMVQPRGLDLPYKSWSITPDWQYHVDSSSASEDIPSPELMAEHVLVQIETPRVNLCFRIGVDTCALVGPRDVPELSDLLQVEMRPAVLLQELSRRGILLMPTDEDAD------------ANGVKFDSPPGSGGPRG--QPTPKHAAIEQMAYQEISTVATVFAIAASNWNQR 792
            V GV+ VE+L  P     VK   +     L+   + R PHP +G GM  ALTV V V   +L P DVRV +WS A  RW+EE +    +  + TR LQ K+T   ALA++QPR +DLP+    +         S   +  +  P +          T RV L   +G     L+GP    E + LL V +RP VLL  L + G+ ++P+  DAD            A  V   +P  +  P+   Q  PK   +E  ++++++ +     +A S WNQR
Sbjct:  506 VSGVLFVEVLAMPAAPRVVKSTTLIRETALSRRGVHRLPHPMQGGGMSQALTVTVAVPPTVLAPPDVRVGHWSAAQRRWVEEPEAPPPFLPDGTRELQLKTTFMTALALLQPRTVDLPFAGCRVPV-------SVGKTSGVCRPGI----------TTRVRLSIAVGPQAAWLLGPVRA-EFAHLLGVGLRPGVLLLRLRQCGLRVVPSVADADYPTVLAAADPADAAAVAAAAPGDAPKPKRTRQLIPKEQRLEAASHRQLARLGCAAVVAPSVWNQR 766          
BLAST of mRNA_M-pyrifera_M_contig65197.15865.1 vs. uniprot
Match: A0A1Y1HRS3_KLENI (Casc1_N domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRS3_KLENI)

HSP 1 Score: 98.2 bits (243), Expect = 1.610e-19
Identity = 77/274 (28.10%), Postives = 124/274 (45.26%), Query Frame = 1
Query:    7 GGVIAVELLEPPDETTTVKRWEMEVVGPLTNTILRRPHP--AEGQGMEGALTVRVQVKDDILVPEDV-------RVAYWSGALDRWMEEEDNQVGWDTETRILQFKSTRCVALAMVQPRGLDLPYKSWSITPDWQYHVDSSSASEDIPSPELMAEHVLVQIETPRVNLCFRIGVDTCALVGPRDVPELSDLLQVEMRPAVLLQELSRRGILLMPTDEDADANGVKFDSPPGSGGPRGQPTPKHAAIEQMAYQEISTVATVFAIAASNWNQRARP 801
            GG  ++++L  P     VK W ++ V PL+ ++ R P+P    G  M G +     +   +++  +V       +V +W      W  +  ++V +D  TR L F++T+   LA++Q R    PY+SW++ P       +S AS  +    L    ++V+IE         IG  TC  V P ++PE+SDL+ V MRP  LL   SRRGI L P D +A   G +   P                +E     +++  A    + +S WN    P
Sbjct:  300 GGTFSIDVLAVPPAPKQVKGWTLKHVTPLSTSVSRLPYPLVTPGGDMSGTMATAPPMGVSLVLAHNVVPSGTAVQVGWWDQEEQCWQTDGVSEVSYDGATRRLSFQTTKLKTLAVLQDRLRLFPYQSWTVRP-------TSEASAVLT---LQTASLVVEIE---------IGDGTCRWVSP-NLPEVSDLVGVAMRPRELLCRASRRGIHLAPEDGEALLMGREVKDP---------------LVESSLCADMAPFAVACTLGSSRWNSAPGP 538          
BLAST of mRNA_M-pyrifera_M_contig65197.15865.1 vs. uniprot
Match: A0A7S3CKL6_9SPIT (Hypothetical protein n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CKL6_9SPIT)

HSP 1 Score: 95.5 bits (236), Expect = 4.440e-19
Identity = 72/270 (26.67%), Postives = 117/270 (43.33%), Query Frame = 1
Query:    4 VGGVIAVELLEPPDETTTVKR--WEMEVVGPLTNTILRRPHPAEGQGMEGA---LTVRVQVKDDILVPEDVRVAYWSGALDRWMEEEDNQVGWDTETRILQFKSTRCVALAMVQPRGLDLPYKSWSITPDWQYHVDSSSASEDIPSPELMAEHV-LVQIETPRVNLCFRIGVDTCALVGPRDVPELSDLLQVEMRPAVLLQELSRRGILLMPTDEDADANGVKFDSPPGSGGPRGQPTPKHAAIEQMAYQEISTVATVFAIAASNWNQRA 795
            VGGVI   +   PD+    K   W +  +  + +T+   P+P     ++      T R+     +   ++++V  W    + W  +    + +D E R L FK+ +   +A +QP+  D PY SW I                      +A+ + L+QI T R+ +C  I      LV   D  EL  L+  +M P +LL+ELS+ GI L+P DEDA+  G+                 K    E+ A  +I+    VFA  +  W+Q+A
Sbjct:   18 VGGVIHSRMFHYPDQDLPKKALGWTLRKIQSINDTLRCVPYPDPTSSVQTESVQTTYRLAEYVYLTEKDEIKVGVWDSDANCWSTDYIEDLNYDKEKRELNFKTRKFAPIAFLQPKTTDYPYDSWDI--------------------RCVADQLALLQINTKRIKICIEIHPLFVKLVQ-MDQKELQHLVNKQMHPGLLLKELSKCGIHLLPEDEDAERGGIHL---------------KDHETEERAILDIAQTLKVFAFQSMKWSQQA 251          
BLAST of mRNA_M-pyrifera_M_contig65197.15865.1 vs. uniprot
Match: A0A7S1KKX9_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KKX9_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 6.260e-18
Identity = 77/270 (28.52%), Postives = 128/270 (47.41%), Query Frame = 1
Query:    4 VGGVIAVELLEPPDETTTVKRWEMEVVGPLTNTILRRPHP---AEGQGMEGALT-VRVQVKDDILVPEDV-RVAYWSGALDRWMEE--EDNQVGWDTETRILQFKSTRCV-ALAMVQPRGLDLPYKSWSITPDWQYHVDSSSASEDIPSPELMAEHVLVQIETPRVNLCFRIGVDTCALVGPRDVPELSDLLQVEMRPAVLLQELSRRGILLMPTDEDADANGVKFDSPPGSGGPRGQPTPKHAAIEQMAYQEISTVATVFAIAASNWNQ 789
            +GG++ +++L  P   +  K W +  +  L+  + R+P+    A+G  ++   T V   V   +L+ ++V  VA+W      W +E  +  +  +D E+R + F +T    ALA+V  R  D+PY+SW I P  +Y    ++A   I       E   ++      ++   I  D C ++ P   PEL  +    + P VLLQ L+  GI L+  DEDA                     PKH+ +EQ AY+E+S +  V + A+S WNQ
Sbjct:  285 IGGIVYMDILHIPPPPSGHKGWTIRKLTSLSKRVKRKPYEQTDAQGNVVDPPSTRVSFVVPSQVLIRKEVPSVAWWDLDKKTWSQEGIDSEKTKYDPESRKITFYTTHLTTALAVVNERVFDVPYRSWFIRPLPRY--GRNAAVYTIKPCAHPTEVAYIE------DIVIFIFNDQCKMLSPLR-PELEHITSKWLEPRVLLQRLAESGINLVVGDEDAQFT---------------DRLPKHSDVEQKAYREMSWLGNVCSFASSKWNQ 530          
BLAST of mRNA_M-pyrifera_M_contig65197.15865.1 vs. uniprot
Match: A0A7S0K4F5_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K4F5_CAFRO)

HSP 1 Score: 91.3 bits (225), Expect = 9.120e-18
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    4 VGGVIAVELLEPPDETTTVKRWEMEVVGPLTNT-ILRRPHPAEGQGMEGALTVRVQVKDDILVPEDVRVAYWSGALDRWMEEEDNQVGWDTE-TRILQFKSTRCVALAMVQPRGLDLPYKSWSITP 375
            V GV+ VE+L  P     VK   +     L+   + R PHP +G GM  ALTV V V   +L P DVRV +WS A  RW+EE +    +  + TR LQ K+T   ALA++QPR +DLP+  WS+ P
Sbjct:  147 VSGVLFVEVLAMPAAPRVVKSTTLIRETALSRRGVHRLPHPMQGGGMSQALTVTVAVPPTVLAPPDVRVGHWSAAQRRWVEEPEAPAPFLPDGTRELQLKTTFMTALALLQPRTVDLPFAGWSLRP 272          
BLAST of mRNA_M-pyrifera_M_contig65197.15865.1 vs. uniprot
Match: A0A7S3D8Y4_9EUKA (Hypothetical protein n=5 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D8Y4_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 2.070e-17
Identity = 76/281 (27.05%), Postives = 123/281 (43.77%), Query Frame = 1
Query:    4 VGGVIAVELLEPPDETTTVKRWEMEVVGPLTNTILRRPHPA-----EGQGMEGALT-----VRVQVKDDILVPED-VRVAYWSGALDRWMEEEDNQVGWDTETRILQFKSTRCVALAMVQPRGLDLPYKSWSITPDWQYHVDSSSASEDIPSPELMAEHVLVQIETPRVNLCFRIGVDTCALVGPRDVPELSDLLQVE--MRPAVLLQELSRRGILLMPTDEDADA--NGVKFDSPPGSGGPRGQPTPKHAAIEQMAYQEISTVATVFAIAASNWN-QRAR 798
            VGGV++V+++  P    T+K W M         I +  +P+      G+GM  +L+     +   + D I+   D   V +W+    +W  E  + + +D E+R+L F S     LA++Q R  D PY+ W   P  +                    H L  +E     +   +    C L+ P D+P+L  L   +    PA+LL+ELS+ GI L+P D DAD   + +  D                  +E+  Y ++S +A  F++A S WN QR R
Sbjct:  269 VGGVLSVDVINLPPPAKTIKGWVMRPFNESEGFISKLAYPSPSTGGSGEGMAPSLSTPPMRISYALPDHIVSRADNPSVGWWNDEELKWNTEGMSDISFDEESRMLTFHSLHLTNLAVLQERDTDFPYQRWMFRPVGE-------------------NHTLFLLEGKAFEIEIEVKHGVCHLLRP-DIPQLHQLRNKKDGWHPAILLKELSKAGINLLPCDADADIIDDVIAKDL---------------EKVEESLYYDLSLIAPSFSLAFSRWNHQRGR 514          
BLAST of mRNA_M-pyrifera_M_contig65197.15865.1 vs. uniprot
Match: A0A5A8E334_CAFRO (Casc1_N domain-containing protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E334_CAFRO)

HSP 1 Score: 91.3 bits (225), Expect = 4.400e-17
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    4 VGGVIAVELLEPPDETTTVKRWEMEVVGPLTNT-ILRRPHPAEGQGMEGALTVRVQVKDDILVPEDVRVAYWSGALDRWMEEEDNQVGWDTE-TRILQFKSTRCVALAMVQPRGLDLPYKSWSITP 375
            V GV+ VE+L  P     VK   +     L+   + R PHP +G GM  ALTV V V   +L P DVRV +WS A  RW+EE +    +  + TR LQ K+T   ALA++QPR +DLP+  WS+ P
Sbjct:  507 VSGVLFVEVLAMPAAPRVVKSTTLIRETALSRRGVHRLPHPMQGGGMSQALTVTVAVPPTVLAPPDVRVGHWSAAQRRWVEEPEAPAPFLPDGTRELQLKTTFMTALALLQPRTVDLPFAGWSLRP 632          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65197.15865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8C3G3_CAFRO1.940e-2332.26Casc1_N domain-containing protein n=1 Tax=Cafeteri... [more]
A0A1Y1HRS3_KLENI1.610e-1928.10Casc1_N domain-containing protein n=1 Tax=Klebsorm... [more]
A0A7S3CKL6_9SPIT4.440e-1926.67Hypothetical protein n=1 Tax=Strombidium rassoulza... [more]
A0A7S1KKX9_9EUKA6.260e-1828.52Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A7S0K4F5_CAFRO9.120e-1842.86Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A7S3D8Y4_9EUKA2.070e-1727.05Hypothetical protein n=5 Tax=Palpitomonas bilix Ta... [more]
A0A5A8E334_CAFRO4.400e-1742.86Casc1_N domain-containing protein n=6 Tax=Cafeteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65197contigM-pyrifera_M_contig65197:421..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.5
Seed ortholog evalue3.8e-20
Seed eggNOG ortholog3067.XP_002952337.1
KEGG koko:K17580
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cancer susceptibility candidate 1 N-terminus
EggNOG OGs2CR11@1,2R6GJ@2759,34MJY@3041,37VW8@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons1
Model size801
Cds size801
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816540.0308018-CDS-M-pyrifera_M_contig65197:420..12211622816540.0308018-CDS-M-pyrifera_M_contig65197:420..1221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65197 421..1221 -
1692278035.574383-CDS-M-pyrifera_M_contig65197:420..12211692278035.574383-CDS-M-pyrifera_M_contig65197:420..1221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65197 421..1221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65197.15865.1prot_M-pyrifera_M_contig65197.15865.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65197 421..1221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65197.15865.1

>prot_M-pyrifera_M_contig65197.15865.1 ID=prot_M-pyrifera_M_contig65197.15865.1|Name=mRNA_M-pyrifera_M_contig65197.15865.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=267bp
AVGGVIAVELLEPPDETTTVKRWEMEVVGPLTNTILRRPHPAEGQGMEGA
LTVRVQVKDDILVPEDVRVAYWSGALDRWMEEEDNQVGWDTETRILQFKS
TRCVALAMVQPRGLDLPYKSWSITPDWQYHVDSSSASEDIPSPELMAEHV
LVQIETPRVNLCFRIGVDTCALVGPRDVPELSDLLQVEMRPAVLLQELSR
RGILLMPTDEDADANGVKFDSPPGSGGPRGQPTPKHAAIEQMAYQEISTV
ATVFAIAASNWNQRARP
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mRNA from alignment at M-pyrifera_M_contig65197:421..1221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65197.15865.1 ID=mRNA_M-pyrifera_M_contig65197.15865.1|Name=mRNA_M-pyrifera_M_contig65197.15865.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=801bp|location=Sequence derived from alignment at M-pyrifera_M_contig65197:421..1221- (Macrocystis pyrifera P11B4 male)
GCAGTTGGTGGTGTGATTGCTGTAGAGTTGCTTGAACCACCTGATGAAAC TACCACTGTCAAACGATGGGAAATGGAAGTAGTTGGGCCATTGACAAACA CTATCCTTCGCAGACCACATCCTGCGGAAGGACAAGGGATGGAAGGTGCG TTAACGGTTCGAGTTCAAGTGAAAGATGACATTCTTGTGCCTGAAGATGT TCGAGTCGCTTATTGGAGTGGTGCCCTTGATCGCTGGATGGAAGAAGAAG ACAATCAAGTAGGTTGGGATACAGAGACGAGGATCTTGCAATTCAAGTCA ACCCGCTGTGTTGCTCTTGCAATGGTTCAACCAAGAGGATTGGATCTTCC GTACAAATCTTGGTCCATTACACCAGATTGGCAGTATCATGTGGATTCTA GCAGTGCAAGTGAGGATATCCCAAGCCCAGAATTGATGGCAGAACATGTC TTGGTTCAAATTGAAACGCCCCGTGTGAATTTGTGCTTTCGAATTGGCGT TGACACTTGCGCACTTGTTGGACCACGTGATGTTCCAGAATTGTCAGATT TGTTACAAGTTGAAATGCGCCCAGCTGTTTTGTTGCAAGAATTGTCACGT CGTGGCATTTTGTTGATGCCAACTGATGAAGATGCGGATGCAAACGGAGT CAAGTTTGACTCTCCACCAGGATCAGGAGGCCCACGTGGACAACCAACTC CGAAGCATGCTGCCATTGAACAAATGGCTTATCAAGAAATCTCGACTGTT GCAACAGTCTTTGCCATTGCTGCTTCCAATTGGAACCAAAGAGCAAGACC A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65197:421..1221-

>mRNA_M-pyrifera_M_contig65197.15865.1 ID=mRNA_M-pyrifera_M_contig65197.15865.1|Name=mRNA_M-pyrifera_M_contig65197.15865.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1602bp|location=Sequence derived from alignment at M-pyrifera_M_contig65197:421..1221- (Macrocystis pyrifera P11B4 male)
GCAGTTGGTGGTGTGATTGCTGTAGAGTTGCTTGAACCACCTGATGAAAC
TACCACTGTCAAACGATGGGAAATGGAAGTAGTTGGGCCATTGACAAACA
CTATCCTTCGCAGACCACATCCTGCGGAAGGACAAGGGATGGAAGGTGCG
TTAACGGTTCGAGTTCAAGTGAAAGATGACATTCTTGTGCCTGAAGATGT
TCGAGTCGCTTATTGGAGTGGTGCCCTTGATCGCTGGATGGAAGAAGAAG
ACAATCAAGTAGGTTGGGATACAGAGACGAGGATCTTGCAATTCAAGTCA
ACCCGCTGTGTTGCTCTTGCAATGGTTCAACCAAGAGGATTGGATCTTCC
GTACAAATCTTGGTCCATTACACCAGATTGGCAGTATCATGTGGATTCTA
GCAGTGCAAGTGAGGATATCCCAAGCCCAGAATTGATGGCAGAACATGTC
TTGGTTCAAATTGAAACGCCCCGTGTGAATTTGTGCTTTCGAATTGGCGT
TGACACTTGCGCACTTGTTGGACCACGTGATGTTCCAGAATTGTCAGATT
TGTTACAAGTTGAAATGCGCCCAGCTGTTTTGTTGCAAGAATTGTCACGT
CGTGGCATTTTGTTGATGCCAACTGATGAAGATGCGGATGCAAACGGAGT
CAAGTTTGACTCTCCACCAGGATCAGGAGGCCCACGTGGACAACCAACTC
CGAAGCATGCTGCCATTGAACAAATGGCTTATCAAGAAATCTCGACTGTT
GCAACAGTCTTTGCCATTGCTGCTTCCAATTGGAACCAAAGAGCAAGACC
AGCAGTTGGTGGTGTGATTGCTGTAGAGTTGCTTGAACCACCTGATGAAA
CTACCACTGTCAAACGATGGGAAATGGAAGTAGTTGGGCCATTGACAAAC
ACTATCCTTCGCAGACCACATCCTGCGGAAGGACAAGGGATGGAAGGTGC
GTTAACGGTTCGAGTTCAAGTGAAAGATGACATTCTTGTGCCTGAAGATG
TTCGAGTCGCTTATTGGAGTGGTGCCCTTGATCGCTGGATGGAAGAAGAA
GACAATCAAGTAGGTTGGGATACAGAGACGAGGATCTTGCAATTCAAGTC
AACCCGCTGTGTTGCTCTTGCAATGGTTCAACCAAGAGGATTGGATCTTC
CGTACAAATCTTGGTCCATTACACCAGATTGGCAGTATCATGTGGATTCT
AGCAGTGCAAGTGAGGATATCCCAAGCCCAGAATTGATGGCAGAACATGT
CTTGGTTCAAATTGAAACGCCCCGTGTGAATTTGTGCTTTCGAATTGGCG
TTGACACTTGCGCACTTGTTGGACCACGTGATGTTCCAGAATTGTCAGAT
TTGTTACAAGTTGAAATGCGCCCAGCTGTTTTGTTGCAAGAATTGTCACG
TCGTGGCATTTTGTTGATGCCAACTGATGAAGATGCGGATGCAAACGGAG
TCAAGTTTGACTCTCCACCAGGATCAGGAGGCCCACGTGGACAACCAACT
CCGAAGCATGCTGCCATTGAACAAATGGCTTATCAAGAAATCTCGACTGT
TGCAACAGTCTTTGCCATTGCTGCTTCCAATTGGAACCAAAGAGCAAGAC
CA
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