mRNA_M-pyrifera_M_contig65195.15864.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65195.15864.1
Unique NamemRNA_M-pyrifera_M_contig65195.15864.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: A0A196S9B0_BLAHN (HOP1, HORMA domain containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S9B0_BLAHN)

HSP 1 Score: 87.8 bits (216), Expect = 1.390e-17
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1
Query:   13 AVHLGRVLEEGVFQALEKRILRSMVFSIWNTADKEQVLNGTAHLLESYAFRITYPSQGRISISMERHGDEGSYTMDRVGEDAVGVVRNLVSLLHTLPPLPEARTATVRLILEDEEVDVKGKGVEE----EWQPPHFEDGGGKS-----DAWDEEPEVFGLGSVATMHHGLNLKL 507
            A  L R LEEGVF ALEKR LR +VF+I++  + +Q     + LLE+Y++  TYP    I++ + ++ D+   T D V   AV ++R L++L  TL PLP  R  T++L   D+ V V           ++QP +FED    S       +  +P V   G + T +H + +K+
Sbjct:   74 AWQLTRWLEEGVFDALEKRYLRGLVFAIYDHPEDKQ----KSRLLETYSYAFTYPDTTNITLEVTQNNDKSVVTTDGVKNQAVILLRTLITLCSTLNPLPNERWVTMQLYYYDD-VTVGSHSHHHIKPPDYQPKYFEDTATASITPGSSTFVADPFVIETGKLRTPYHAMCMKV 242          
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: D8M718_BLAHO (HORMA domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M718_BLAHO)

HSP 1 Score: 86.7 bits (213), Expect = 3.550e-17
Identity = 59/177 (33.33%), Postives = 95/177 (53.67%), Query Frame = 1
Query:   13 AVHLGRVLEEGVFQALEKRILRSMVFSIW-NTADKEQVLNGTAHLLESYAFRITYPSQGRISISMERHGDEGSYTMDRVGEDAVGVVRNLVSLLHTLPPLPEARTATVRLILEDEEVDVKGKGVEEEWQPPHFEDGGGKS-----DAWDEEPEVFGLGSVATMHHGLNLKLGLAKAT 525
            A  L R LEEGVF ALEKR LR +VF+I+ N  +K Q     + L+E+Y++  TYP    I + ++++ +    + D V   AV ++R L++L  TL PLP  R  T++L   D   D+       ++QP +FED    S      ++  +P V   G + T  H + +K+ + ++T
Sbjct:   73 AWQLTRWLEEGVFDALEKRYLRGLVFAIYDNPENKSQ-----SRLIETYSYAFTYPDTQHIQLEVKQNNERSVVSTDGVKNQAVILLRTLITLCSTLSPLPRERWITLQLYYYD---DI----TPPDYQPAYFEDTADSSIRPGDSSFISDPFVIEAGRLRTPFHAMCMKVRVTEST 237          
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: A0A1J4KJ15_9EUKA (HORMA domain containing protein n=2 Tax=Tritrichomonas TaxID=5723 RepID=A0A1J4KJ15_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 4.680e-16
Identity = 60/181 (33.15%), Postives = 92/181 (50.83%), Query Frame = 1
Query:    1 STPMAVHLGRVLEEGVFQALEKRILRSMVFSIWNTADKEQVLNGTAHLLESYAFRITYPSQGRISISM-----ERHGDEGSY-TMDRVGEDAVGVVRNLVSLLHTLPPLPEARTATVRLILEDE--EVDVKGKGVEEEWQPPHFEDGGGKSDAWDEEPEVFGLG-SVATMHHGLNLKLGLA 516
            S P    +   +E GVF A+EK  L+++VFSI++        N  + LLESY F+ +YP  G IS+ M      +   E SY T +++ +    ++R L++L HTLPPLP+ R   +RL   ++    D    G       P+FE        +  EPE   +G SV T +H ++L+L  A
Sbjct:   44 SNPEIAAMTEWMENGVFDAIEKHYLKALVFSIFSE------FNNPSSLLESYTFKFSYPEDGNISMGMIATAKGQSSKELSYMTREQIQQAWCTLIRTLITLSHTLPPLPQERHVAMRLYYYEDVTPTDYNPPGFTAADDAPNFE--------FVAEPECVEIGGSVRTKYHAVSLRLDTA 210          
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: A0A8K1FAY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FAY3_PYTOL)

HSP 1 Score: 81.6 bits (200), Expect = 6.950e-15
Identity = 52/173 (30.06%), Postives = 92/173 (53.18%), Query Frame = 1
Query:   13 AVHLGRVLEEGVFQALEKRILRSMVFSIWNTADKEQVLNGTAHLLESYAFRITYPSQGRISISMERHGDEG-SYTMDRVGEDAVGVVRNLVSLLHTLPPLPEARTATVRLILEDEEVDVKGKGVEEEWQPPHFEDGGGKSDAWDEEPEV-FGLGSVATMHHGLNLKLGLAKAT 525
            A+ + R LE+GVF+ALEK+ L +++F I++T+  +Q       LLESY ++I + S G   ++    G      + + V   A+ ++R+LVSL+++L PLPE R  T+++I   +          + WQP +FE    +  +    P +   +G + T HH + ++L     T
Sbjct:   76 ALLVTRWLEDGVFEALEKKYLETLIFCIYSTSVTKQ----PHELLESYTYKIQHASSGSTKLATSFTGSNSMDCSPENVKAQAIQMIRSLVSLVNSLDPLPEQRLITIKMIFNSD--------CPQGWQPKYFERATPEYSSAVASPSLKLSIGKLVTPHHSVVMELEATDVT 236          
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: A0A507DC70_9FUNG (HORMA domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DC70_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 1.490e-14
Identity = 52/164 (31.71%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   34 LEEGVFQALEKRILRSMVFSIWNTADKEQVLNGTAHLLESYAFRITYPSQGRISISMERHGDEGSY--TMDRVGEDAVGVVRNLVSLLHTLPPLPEARTATVRLILEDEEVDVKGKGVEEEWQPPHF-EDGGGKSDAWDEEPEVFGLGSVATMHHGLNLKLGLA 516
            LE GVF ALEK+ LR+++F I+ T D+ +       L+ESY F  +YP+ G+  +S    G +  +  T   + +    ++R L++L   L PLP+    T+++   DE          E+++PP+F      K   +  +PE   +G+V T +H LNL+L  A
Sbjct:  428 LECGVFDALEKKYLRTLIFGIYTTPDEPE------KLMESYTFNFSYPTDGQFHVSFVTDGKQAVHFRTKKEIMKATSEMLRRLLTLTQNLSPLPDNPNITMKIYYYDEV-------TPEDYEPPYFVASDHTKPYYFGRKPEKLVIGNVETAYHALNLRLQYA 578          
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: A0A5A8CEM5_CAFRO (HORMA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CEM5_CAFRO)

HSP 1 Score: 77.4 bits (189), Expect = 2.200e-13
Identity = 57/152 (37.50%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   34 LEEGVFQALEKRILRSMVFSIWNTADKEQVLNGT--------AHLLESYAFRITYPSQGRISISME-RHGDEGSYTMDRVGEDAVGVVRNLVSLLHTLPPLPEARTA-TVRLILEDEEVDVKGKGVEEEWQPPHFEDGGGKSDAWDEEPEVF 459
            LE+GVF ALE   LR++V S+W   +     + T        A LLESY  R+TY    ++ +S+E R G +  +T       A+ +VR L+SL++TLP LPEA    ++RL   D+ V    K     W P HF      SDA D  PE F
Sbjct:   77 LEDGVFVALEGGFLRAVVLSLWQLPESTPASSDTSDSAGPEGASLLESYIIRVTYSEDSQVHLSVEARSGSK--FTRAGASRQAIALVRTLISLVNTLPQLPEADLLLSMRLYYYDDLVPHDDK-----WAPKHF------SDARDIMPERF 215          
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: A0A507BMW6_9FUNG (HORMA domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BMW6_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 5.660e-13
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   34 LEEGVFQALEKRILRSMVFSIWNTADKEQVLNGTAHLLESYAFRITYPSQGRISISMERHGDEGSY--TMDRVGEDAVGVVRNLVSLLHTLPPLPEARTATVRLILEDEEVDVKGKGVEEEWQPPHF-EDGGGKSDAWDEEPEVFGLGSVATMHHGLNLKL 507
            L  GVF AL+K+ LR+++F I+   D+ +      HLLE+Y F  +YPS+G+  +S    G +  +  T   + +    ++R L++L  +L  LP+    T+++   DE          E+++PP F      K   +  +PE  G+G+V T +H L+L+L
Sbjct:   78 LNGGVFDALDKKYLRTLIFGIYANPDEPE------HLLETYTFNFSYPSEGQTHVSFVTDGKQPFHFKTKKEIMKATSEMLRRLLTLTQSLGALPDNANITMKIYYYDEV-------TPEDYEPPFFIACDHNKPYYFTHKPEKLGVGTVETAYHALSLRL 225          
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: UPI001F5D2330 (meiosis-specific protein PAIR2 isoform X1 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D2330)

HSP 1 Score: 72.4 bits (176), Expect = 1.160e-11
Identity = 54/172 (31.40%), Postives = 93/172 (54.07%), Query Frame = 1
Query:   34 LEEGVFQALEKRILRSMVFSIWNTADKEQVLNGTAHLLESYAFRITYPSQGR-ISISMERHGDE----------GSYTMDRVGEDAVGVVRNLVSLLHTLPPLPEARTATVRLILEDEEVDVKGKGVEEEWQPPHFEDGGGKSDA---WDEEPEVFGLGSVATMHHGLNLKL 507
            +E+GV+ AL+K+ L++++F I    +KE+       ++E Y F  TYPS+G  +S+++ R G +             T D +   A  ++R LVSL+ TL  +P+ RT  ++L+  D   DV      E+++PP F+ G   ++A   W++ P    +GSV + H  L LK+
Sbjct:   73 MEKGVYDALQKKYLKTLLFCI---CEKEE-----GPMIEEYTFSFTYPSKGEDVSMNLSRTGSKKNSATFKSNAAEVTPDEMRSSACKMIRTLVSLMRTLDQMPDERTILMKLLYYD---DV----TPEDYEPPFFK-GCVDNEAINIWNKNPLKMEVGSVNSKHLVLALKV 228          
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: A0A0G4IYS9_PLABS (HORMA domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYS9_PLABS)

HSP 1 Score: 70.9 bits (172), Expect = 4.000e-11
Identity = 51/162 (31.48%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   34 LEEGVFQALEKRILRSMVFSIWNTADKEQVLNGTAHLLESYAFRITYPSQGRISISMERHGDEGSY---TMDRVGEDAVGVVRNLVSLLHTLPPLPEARTATVRLILEDEEVDVKGKGVEEEWQPPHFEDGGGKSDA-WDEEPEVFGLGSVATMHHGLNLKL 507
            +++G   +LEKR L   VF+I+    +E   N   HL+E+Y F+I Y     + ++ +  G E S    T D + +    ++R+L+++  TLPPLPE R  +++L+  D   DV      E+++P HF     + +  +   P V  LG++AT  H L L+L
Sbjct:   93 IDQGCLPSLEKRYLEEAVFTIYGMFQQEGS-NPGFHLIETYNFQIRYHDND-VVMTRKSDGVEVSQSVPTKDDISQMMRSMIRSLIAMAGTLPPLPEERAFSMKLLYRD---DV----TPEDYEPEHFRRATSQQELRFFSRPHVTTLGAMATSFHELKLQL 245          
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Match: A0A8H5BY06_9AGAR (HORMA domain-containing protein n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5BY06_9AGAR)

HSP 1 Score: 70.9 bits (172), Expect = 4.180e-11
Identity = 54/182 (29.67%), Postives = 84/182 (46.15%), Query Frame = 1
Query:   34 LEEGVFQALEKRILRSMVFSIWNTADKEQVLNGTAHLLESYAFRITYPS------------QGR-----ISISMERHGDEGSYTMDRVGEDAVGVVRNLVSLLHTLPPLPEARTATVRLILEDEEVDVKGKGVEEEWQPPHFEDGGGKSDAW-------DEEPEVFGLGSVATMHHGLNLKL 507
            +E G+F ALEKR LRS +F I+  A      N   +++E+Y F    P+            +GR     I+I++ ++G     T+  V      +++ L+  +  +  LP  R AT +L   DE           E++PPHFE G  + D W       DE PE   +G + T HH +NL +
Sbjct:   97 MEYGIFDALEKRYLRSFIFGIYLDA------NNPTNIVEAYTFNFKVPTVFFVYGSDTQEAEGRTVADPITIAL-KNGKVP--TLRDVKSSVRALLKTLIQAISNMDILPRRRFATFKLFYTDE--------TPAEYEPPHFESGDAERDKWYFMTHDLDEVPERTAIGKIHTGHHSVNLNV 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65195.15864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A196S9B0_BLAHN1.390e-1734.48HOP1, HORMA domain containing protein n=1 Tax=Blas... [more]
D8M718_BLAHO3.550e-1733.33HORMA domain-containing protein n=1 Tax=Blastocyst... [more]
A0A1J4KJ15_9EUKA4.680e-1633.15HORMA domain containing protein n=2 Tax=Tritrichom... [more]
A0A8K1FAY3_PYTOL6.950e-1530.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A507DC70_9FUNG1.490e-1431.71HORMA domain-containing protein n=2 Tax=Synchytriu... [more]
A0A5A8CEM5_CAFRO2.200e-1337.50HORMA domain-containing protein n=3 Tax=Cafeteria ... [more]
A0A507BMW6_9FUNG5.660e-1330.43HORMA domain-containing protein n=1 Tax=Synchytriu... [more]
UPI001F5D23301.160e-1131.40meiosis-specific protein PAIR2 isoform X1 n=2 Tax=... [more]
A0A0G4IYS9_PLABS4.000e-1131.48HORMA domain-containing protein n=1 Tax=Plasmodiop... [more]
A0A8H5BY06_9AGAR4.180e-1129.67HORMA domain-containing protein n=1 Tax=Psilocybe ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65195contigM-pyrifera_M_contig65195:578..1234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue6.5e-13
Seed eggNOG ortholog5722.XP_001321336.1
Preferred nameHORMAD1
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K03294,ko:K12778,ko:K15620,ko:K17616
KEGG TC2.A.3.2
KEGG ReactionR03656
KEGG Pathwayko00970,ko04113,map00970,map04113
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000217,GO:0000226,GO:0000228,GO:0000280,GO:0000400,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000819,GO:0001701,GO:0001824,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004721,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007062,GO:0007098,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008150,GO:0008152,GO:0009553,GO:0009554,GO:0009555,GO:0009556,GO:0009790,GO:0009792,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030997,GO:0031023,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0033313,GO:0034293,GO:0034641,GO:0035825,GO:0036211,GO:0040020,GO:0042138,GO:0042578,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045835,GO:0046483,GO:0046605,GO:0048229,GO:0048232,GO:0048236,GO:0048285,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051026,GO:0051128,GO:0051129,GO:0051177,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051493,GO:0051598,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0060629,GO:0060631,GO:0061982,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1903046,GO:2000241,GO:2000242
EggNOG free text desc.regulation of homologous chromosome segregation
EggNOG OGsKOG4652@1,KOG4652@2759
EC6.1.1.5
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko04131
Exons2
Model size525
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65195.15864.1prot_M-pyrifera_M_contig65195.15864.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65195 578..1225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816539.9708192-CDS-M-pyrifera_M_contig65195:577..9121622816539.9708192-CDS-M-pyrifera_M_contig65195:577..912Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65195 578..912 -
1692278035.5393436-CDS-M-pyrifera_M_contig65195:577..9121692278035.5393436-CDS-M-pyrifera_M_contig65195:577..912Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65195 578..912 -
1622816539.9837563-CDS-M-pyrifera_M_contig65195:1044..12251622816539.9837563-CDS-M-pyrifera_M_contig65195:1044..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65195 1045..1225 -
1692278035.554099-CDS-M-pyrifera_M_contig65195:1044..12251692278035.554099-CDS-M-pyrifera_M_contig65195:1044..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65195 1045..1225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816539.9961226-UTR-M-pyrifera_M_contig65195:1225..12341622816539.9961226-UTR-M-pyrifera_M_contig65195:1225..1234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65195 1226..1234 -
1692278035.5637898-UTR-M-pyrifera_M_contig65195:1225..12341692278035.5637898-UTR-M-pyrifera_M_contig65195:1225..1234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65195 1226..1234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65195.15864.1

>prot_M-pyrifera_M_contig65195.15864.1 ID=prot_M-pyrifera_M_contig65195.15864.1|Name=mRNA_M-pyrifera_M_contig65195.15864.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
MAVHLGRVLEEGVFQALEKRILRSMVFSIWNTADKEQVLNGTAHLLESYA
FRITYPSQGRISISMERHGDEGSYTMDRVGEDAVGVVRNLVSLLHTLPPL
PEARTATVRLILEDEEVDVKGKGVEEEWQPPHFEDGGGKSDAWDEEPEVF
GLGSVATMHHGLNLKLGLAKAT
back to top

mRNA from alignment at M-pyrifera_M_contig65195:578..1234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65195.15864.1 ID=mRNA_M-pyrifera_M_contig65195.15864.1|Name=mRNA_M-pyrifera_M_contig65195.15864.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=657bp|location=Sequence derived from alignment at M-pyrifera_M_contig65195:578..1234- (Macrocystis pyrifera P11B4 male)
TCCACCCCAATGGCGGTGCATTTGGGGCGTGTGTTGGAAGAAGGAGTGTT CCAAGCTTTGGAAAAGCGAATTCTTCGTTCGATGGTGTTTTCCATTTGGA ATACAGCTGACAAAGAGCAAGTTTTGAATGGCACCGCGCACCTCCTCGAA TCCTATGCATTTCGCATCACCTACCCCTCCCAAGGACGAAGTACGTGGAA GGAAAAAGGGATTGGGGGGTGGAAGGGGCTAGAATGTTGGGATTGGGGGG AAGGAAGAGGTATTTTTTGTTGTCAATTTTTTCCTCATTGTCCTTCTCCC ATCTCTTGTCTTTTCTGTTCAGTTTCCATTTCCATGGAACGTCATGGTGA TGAAGGAAGCTACACAATGGATCGTGTGGGAGAAGATGCAGTTGGTGTGG TTCGGAATCTGGTGTCATTGTTGCATACATTGCCGCCATTGCCTGAAGCT CGCACAGCCACTGTTCGATTGATTCTGGAAGATGAAGAGGTTGATGTGAA GGGGAAAGGTGTGGAGGAGGAATGGCAGCCTCCACATTTTGAGGATGGAG GAGGCAAGAGCGATGCGTGGGATGAAGAACCAGAAGTGTTTGGCCTCGGT TCTGTTGCAACGATGCACCATGGGTTGAACTTGAAGCTGGGATTGGCAAA GGCAACT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig65195:578..1234-

>mRNA_M-pyrifera_M_contig65195.15864.1 ID=mRNA_M-pyrifera_M_contig65195.15864.1|Name=mRNA_M-pyrifera_M_contig65195.15864.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig65195:578..1234- (Macrocystis pyrifera P11B4 male)
ATGGCGGTGCATTTGGGGCGTGTGTTGGAAGAAGGAGTGTTCCAAGCTTT
GGAAAAGCGAATTCTTCGTTCGATGGTGTTTTCCATTTGGAATACAGCTG
ACAAAGAGCAAGTTTTGAATGGCACCGCGCACCTCCTCGAATCCTATGCA
TTTCGCATCACCTACCCCTCCCAAGGACGAAATGGCGGTGCATTTGGGGC
GTGTGTTGGAAGAAGGAGTGTTCCAAGCTTTGGAAAAGCGAATTCTTCGT
TCGATGGTGTTTTCCATTTGGAATACAGCTGACAAAGAGCAAGTTTTGAA
TGGCACCGCGCACCTCCTCGAATCCTATGCATTTCGCATCACCTACCCCT
CCCAAGGACGAATTTCCATTTCCATGGAACGTCATGGTGATGAAGGAAGC
TACACAATGGATCGTGTGGGAGAAGATGCAGTTGGTGTGGTTCGGAATCT
GGTGTCATTGTTGCATACATTGCCGCCATTGCCTGAAGCTCGCACAGCCA
CTGTTCGATTGATTCTGGAAGATGAAGAGGTTGATGTGAAGGGGAAAGGT
GTGGAGGAGGAATGGCAGCCTCCACATTTTGAGGATGGAGGAGGCAAGAG
CGATGCGTGGGATGAAGAACCAGAAGTGTTTGGCCTCGGTTCTGTTGCAA
CGATGCACCATGGGTTGAACTTGAAGCTGGGATTGGCAAAGGCAACTTTT
CCATTTCCATGGAACGTCATGGTGATGAAGGAAGCTACACAATGGATCGT
GTGGGAGAAGATGCAGTTGGTGTGGTTCGGAATCTGGTGTCATTGTTGCA
TACATTGCCGCCATTGCCTGAAGCTCGCACAGCCACTGTTCGATTGATTC
TGGAAGATGAAGAGGTTGATGTGAAGGGGAAAGGTGTGGAGGAGGAATGG
CAGCCTCCACATTTTGAGGATGGAGGAGGCAAGAGCGATGCGTGGGATGA
AGAACCAGAAGTGTTTGGCCTCGGTTCTGTTGCAACGATGCACCATGGGT
TGAACTTGAAGCTGGGATTGGCAAAGGCAACT
back to top