mRNA_M-pyrifera_M_contig65137.15860.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65137.15860.1
Unique NamemRNA_M-pyrifera_M_contig65137.15860.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65137.15860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65137contigM-pyrifera_M_contig65137:861..1256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816539.761872-UTR-M-pyrifera_M_contig65137:860..8661622816539.761872-UTR-M-pyrifera_M_contig65137:860..866Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65137 861..866 +
1692278035.4107714-UTR-M-pyrifera_M_contig65137:860..8661692278035.4107714-UTR-M-pyrifera_M_contig65137:860..866Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65137 861..866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816539.7721884-CDS-M-pyrifera_M_contig65137:866..12561622816539.7721884-CDS-M-pyrifera_M_contig65137:866..1256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65137 867..1256 +
1692278035.4218867-CDS-M-pyrifera_M_contig65137:866..12561692278035.4218867-CDS-M-pyrifera_M_contig65137:866..1256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65137 867..1256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65137.15860.1prot_M-pyrifera_M_contig65137.15860.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65137 867..1256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65137.15860.1

>prot_M-pyrifera_M_contig65137.15860.1 ID=prot_M-pyrifera_M_contig65137.15860.1|Name=mRNA_M-pyrifera_M_contig65137.15860.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MTQGARPDVVTLNVITGALASRRDVRATYAFVAREFPRHELLPDHHTVRH
LVRMHADLGQPDIAETVLRQAEEHGHVANEHVFGSVIHAYSRANNLKRAV
HLLQEMRARSLHCPDRYVQLLRMRMREHGV
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mRNA from alignment at M-pyrifera_M_contig65137:861..1256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65137.15860.1 ID=mRNA_M-pyrifera_M_contig65137.15860.1|Name=mRNA_M-pyrifera_M_contig65137.15860.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig65137:861..1256+ (Macrocystis pyrifera P11B4 male)
GATGAAATGACGCAAGGTGCGAGACCAGACGTTGTCACTCTCAATGTGAT
CACTGGTGCTCTTGCTTCGAGAAGAGATGTAAGAGCAACGTATGCTTTCG
TTGCAAGAGAGTTTCCACGCCATGAGCTGTTACCTGACCATCACACTGTG
CGACATTTAGTGCGGATGCATGCTGATCTTGGACAACCAGACATTGCAGA
AACTGTTCTTCGTCAGGCTGAAGAACATGGGCATGTTGCGAATGAACACG
TCTTTGGAAGTGTCATCCATGCATATTCCAGAGCAAACAACCTCAAACGT
GCAGTTCACCTCCTCCAAGAAATGCGTGCTCGATCTCTTCATTGTCCTGA
CAGGTATGTGCAATTGTTGCGAATGAGGATGCGTGAGCATGGAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65137:861..1256+

>mRNA_M-pyrifera_M_contig65137.15860.1 ID=mRNA_M-pyrifera_M_contig65137.15860.1|Name=mRNA_M-pyrifera_M_contig65137.15860.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig65137:861..1256+ (Macrocystis pyrifera P11B4 male)
ATGACGCAAGGTGCGAGACCAGACGTTGTCACTCTCAATGTGATCACTGG
TGCTCTTGCTTCGAGAAGAGATGTAAGAGCAACGTATGCTTTCGTTGCAA
GAGAGTTTCCACGCCATGAGCTGTTACCTGACCATCACACTGTGCGACAT
TTAGTGCGGATGCATGCTGATCTTGGACAACCAGACATTGCAGAAACTGT
TCTTCGTCAGGCTGAAGAACATGGGCATGTTGCGAATGAACACGTCTTTG
GAAGTGTCATCCATGCATATTCCAGAGCAAACAACCTCAAACGTGCAGTT
CACCTCCTCCAAGAAATGCGTGCTCGATCTCTTCATTGTCCTGACAGGTA
TGTGCAATTGTTGCGAATGAGGATGCGTGAGCATGGAGTAATGACGCAAG
GTGCGAGACCAGACGTTGTCACTCTCAATGTGATCACTGGTGCTCTTGCT
TCGAGAAGAGATGTAAGAGCAACGTATGCTTTCGTTGCAAGAGAGTTTCC
ACGCCATGAGCTGTTACCTGACCATCACACTGTGCGACATTTAGTGCGGA
TGCATGCTGATCTTGGACAACCAGACATTGCAGAAACTGTTCTTCGTCAG
GCTGAAGAACATGGGCATGTTGCGAATGAACACGTCTTTGGAAGTGTCAT
CCATGCATATTCCAGAGCAAACAACCTCAAACGTGCAGTTCACCTCCTCC
AAGAAATGCGTGCTCGATCTCTTCATTGTCCTGACAGGTATGTGCAATTG
TTGCGAATGAGGATGCGTGAGCATGGAGTA
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