mRNA_M-pyrifera_M_contig65044.15843.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65044.15843.1
Unique NamemRNA_M-pyrifera_M_contig65044.15843.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: UPI000EF50020 (transient receptor potential cation channel subfamily A member 1 homolog isoform X1 n=2 Tax=Ciona intestinalis TaxID=7719 RepID=UPI000EF50020)

HSP 1 Score: 71.2 bits (173), Expect = 5.320e-12
Identity = 41/131 (31.30%), Postives = 59/131 (45.04%), Query Frame = 1
Query:   10 INAADKARWTPLHCACESGFLDVVEYLVKAGASVNVLSDSFTIPLHYLVR---KPTNDSLW---------------ERHKRAIKLMLDEGANVNAQDYFGHTLLHGACARGRDPRCVQFLVEQGAAPDVPD 348
            +N  D  + TP+H A       ++ YL+K GASV +  +    PLH++ +   K   DS W               E     +KL++D GA VNA+D    T LH AC RG      + L   G A ++ D
Sbjct:   89 LNEKDDGKLTPMHYAARYNHYHMISYLIKNGASVQIKGEDDATPLHFIAKYKKKRATDSTWNYDEASDSDDEPMPEEETLSCLKLLVDNGAQVNARDAMSLTPLHQACTRGNTDAVRELLSCVGVALEMAD 219          
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: A0A1A6HAH0_NEOLE (Uncharacterized protein n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6HAH0_NEOLE)

HSP 1 Score: 65.9 bits (159), Expect = 1.020e-10
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 1
Query:    1 GSDINAADKARWTPLHCACESGFLDVVEYLVKAGASVNVLSDSF---TIPLHYLVRKPTNDSLWERHKRAIKLMLDEGANVNAQDYFGHTLLHGACARGRDPRCVQFL 315
            G+ +NA ++A  TPLH A E    +++E L+  GA+VN  + S     + L           L       I+L+L+ GA VNAQD+ G T LH AC  GR+  C + +
Sbjct:   63 GAQVNAINEASMTPLHMAAEILDKNMIETLIACGANVNCATSSTGSTALKLAVCTASSKAGQLLAAGVGCIRLLLNHGAEVNAQDHEGQTALHKACLGGREAICKRNI 170          
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: H2Y8X8_CIOSA (Ion_trans domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Y8X8_CIOSA)

HSP 1 Score: 67.0 bits (162), Expect = 1.590e-10
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = 1
Query:   10 INAADKARWTPLHCACESGFLDVVEYLVKAGASVNVLSDSFTIPLHYLVR---KPTNDSLW---------------ERHKRAIKLMLDEGANVNAQDYFGHTLLHGACARGRDPRCVQFLV 318
            +N  D  + TP+H A       ++ +L+K GASV +  +    PLH++ +   K   DS W               E     +KL+++ GA VNA+D    T LH AC RG      + LV
Sbjct:    1 LNEKDDGKLTPMHYAARYNHYHMISFLIKNGASVQIKGEDDATPLHFIAKYKKKRATDSSWNYDDVSESDDEPMPEEEKLSCLKLLVENGAQVNARDSMSLTPLHQACTRGNTDAVRELLV 121          
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: A0A0U5FNG0_ASPCI (Uncharacterized protein n=1 Tax=Aspergillus calidoustus TaxID=454130 RepID=A0A0U5FNG0_ASPCI)

HSP 1 Score: 65.9 bits (159), Expect = 3.850e-10
Identity = 42/125 (33.60%), Postives = 66/125 (52.80%), Query Frame = 1
Query:    1 GSDINAA--DKARWTPLHCACESGFLDVVEYLVKAGASVNVLSDSFTIPLHYLVRKPTNDSLWERHKRA-IKLMLDEGANVNAQDYFGHTLLHGACARGRDPR-----CVQFLVEQGAAPDVPDE 351
            G+D+N    +  ++TP+H A + G+ D++E L++ GA +     +   PLH++V        W+    +  K +L  GA++NAQD  G TLLH       DPR      VQFL+E GA   + D+
Sbjct:  441 GADVNTPIPETPKYTPVHIAAKEGYWDLLELLLERGALITQAEGTGESPLHFMV--------WDDEVHSGTKTLLKHGADINAQDSEGSTLLHKLFKV--DPRRYYKDIVQFLLESGADLSIRDK 555          
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: A0A8J6GII1_MICOH (Ankyrin repeat domain-containing protein 61 n=5 Tax=Arvicolinae TaxID=39087 RepID=A0A8J6GII1_MICOH)

HSP 1 Score: 64.7 bits (156), Expect = 8.350e-10
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 1
Query:    1 GSDINAADKARWTPLHCACESGFLDVVEYLVKAGASVNVLSDSF---TIPLHYLVRKPTNDSLWERHKRAIKLMLDEGANVNAQDYFGHTLLHGACARGRDPRCVQFLVE 321
            G+ +NA ++AR TPLH A E    +++E L+  GA+VN  + +     + L           L       I+L+L+ GA VNAQD+ G T LH AC  GR+   +  L+E
Sbjct:  127 GARVNAMNRARMTPLHMAAEILDKNMIETLIACGANVNCATSNTGNTALKLAVCTASSKAGQLLAAGVGCIRLLLNHGAQVNAQDHKGQTALHKACFGGREV-IINLLLE 235          
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: A0A061I5F3_CRIGR (Ankyrin repeat domain 61 n=4 Tax=Cricetinae TaxID=10026 RepID=A0A061I5F3_CRIGR)

HSP 1 Score: 63.9 bits (154), Expect = 1.720e-9
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 1
Query:   10 INAADKARWTPLHCACESGFLDVVEYLVKAGASVNVL---SDSFTIPLHYLVRKPTNDSLWERHKRAIKLMLDEGANVNAQDYFGHTLLHGACARGRDPRCVQFLVEQGAAPDV 342
            +NA +KA  TPLH A E    ++VE L+  GA VN     + S  + L           L       I+L+L+ GA VNAQD+ G T LH AC  GR+   +  L+E  A  ++
Sbjct:  194 VNAINKANMTPLHMAAEKLDKNMVETLIACGADVNFAISSTGSTALKLAVCTASSKAGQLLAAGVDCIRLLLNHGAQVNAQDHQGQTALHKACFGGREV-IINLLLEFEANANI 306          
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: A0A7X4AML0_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Acidobacteriia bacterium TaxID=2081523 RepID=A0A7X4AML0_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.080e-9
Identity = 37/109 (33.94%), Postives = 55/109 (50.46%), Query Frame = 1
Query:    4 SDINAADKARWTPLHCACESGFLDVVEYLVKAGASVNVLSDSFTIPLHYLVRKPTNDSLWERHKRAIKLMLDEGANVNAQDYFGHTLLHGACARGRDPRCVQFLVEQGA 330
            +++ A     +TPLH +C  G     E L++  A VN ++D+       +   P + +   RH   +KL+LD GA VNA+ + G T LH A   G D   V  L+E GA
Sbjct:   86 AEMAACSPDGFTPLHLSCFFGHFHCAELLIRRAADVNAVADN------PMAVAPIHSAAAGRHLDIVKLLLDNGACVNARQHGGWTALHAAAMNG-DQAMVDALLEAGA 187          
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: E9G0L5_DAPPU (SOCS box domain-containing protein n=9 Tax=Daphnia TaxID=6668 RepID=E9G0L5_DAPPU)

HSP 1 Score: 62.8 bits (151), Expect = 4.480e-9
Identity = 36/120 (30.00%), Postives = 62/120 (51.67%), Query Frame = 1
Query:    1 GSDINAADKARWTPLHCACESGFLDVVEYLVKAGASVN----VLSDSFTIPLHYLVRKPTNDSLWERHKRAIKLMLDEGANVNAQDYFGHTLLHGACARGRDPRCVQFLVEQGAAPDVPD 348
            GSD+NA D   +T LH + E G+ +++  L++  A VN    +  D        L  +P + ++   H  A +++L+ GANVNA+ +FG  +   +     +P  ++ L+  GA PD  D
Sbjct:   67 GSDVNARDDCGYTALHLSAEHGYTEIMSLLLEYQAKVNFSDKIDEDKVDANKPNLCDEPLHLAIKNGHYEAARMLLENGANVNARYFFGCEI---SLISAINPEAMELLLMYGAYPDSRD 183          
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: A0A1B1U7D8_9HELI (Cyclic di-GMP-binding protein n=1 Tax=Helicobacter enhydrae TaxID=222136 RepID=A0A1B1U7D8_9HELI)

HSP 1 Score: 62.0 bits (149), Expect = 5.640e-9
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 GSDINAADKARW---TPLHCACESGFLDVVEYLVKAGASVNVLSDSFTIPLHYLVRKPTNDSLWERHKRAIKLMLDEGANVNAQDYFGHTLLHGACARGRDPRCVQFLVEQGA 330
            G D++A    RW   TPL+ AC SG+ DVVE ++  GA V+  S   T PL  +  +  ND          K++L  GA+VNAQD  G+T L+ A    R+ + +Q L++ GA
Sbjct:   39 GGDLDA----RWRGMTPLYNACRSGWTDVVELMIARGADVDEASYGET-PLLKVTGRKVNDV------ELAKVLLGNGADVNAQDTQGNTPLYHAIMN-RNKKMIQLLLDNGA 139          
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Match: UPI001E277B7A (putative ankyrin repeat protein RF_0381 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E277B7A)

HSP 1 Score: 60.8 bits (146), Expect = 7.170e-9
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    7 DINAADKARWTPLHCACESGFLDVVEY--LVKAGASVNVLSDSFTIPLHYLVRKPTNDSLWERHKRAIKLMLDEGANVNAQDYFGHT 261
            ++NA +K   TPL   C+SG L ++ Y  L++AGA V     S   PLH++VR+       ER    +KL+L  GA VNA++Y G T
Sbjct:  107 NVNAKNKDGLTPLLVLCKSGDLSLIHYCLLLRAGADVMATDSSGCTPLHFVVREKDKT---ERKLEVMKLLLANGAQVNARNYAGST 190          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65044.15843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000EF500205.320e-1231.30transient receptor potential cation channel subfam... [more]
A0A1A6HAH0_NEOLE1.020e-1035.19Uncharacterized protein n=1 Tax=Neotoma lepida Tax... [more]
H2Y8X8_CIOSA1.590e-1030.58Ion_trans domain-containing protein n=1 Tax=Ciona ... [more]
A0A0U5FNG0_ASPCI3.850e-1033.60Uncharacterized protein n=1 Tax=Aspergillus calido... [more]
A0A8J6GII1_MICOH8.350e-1035.45Ankyrin repeat domain-containing protein 61 n=5 Ta... [more]
A0A061I5F3_CRIGR1.720e-935.96Ankyrin repeat domain 61 n=4 Tax=Cricetinae TaxID=... [more]
A0A7X4AML0_9BACT2.080e-933.94Ankyrin repeat domain-containing protein n=1 Tax=A... [more]
E9G0L5_DAPPU4.480e-930.00SOCS box domain-containing protein n=9 Tax=Daphnia... [more]
A0A1B1U7D8_9HELI5.640e-938.05Cyclic di-GMP-binding protein n=1 Tax=Helicobacter... [more]
UPI001E277B7A7.170e-940.23putative ankyrin repeat protein RF_0381 n=1 Tax=Ha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65044contigM-pyrifera_M_contig65044:982..1335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score68.6
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog27679.XP_010343096.1
Preferred nameANKRD61
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin repeat
EggNOG OGs359TP@314146,392DF@33154,3BKHN@33208,3D04Q@33213,3JDFJ@40674,48414@7711,48WCH@7742,4MHTR@9443,COG0666@1,KOG4177@2759
COG Functional cat.M
Best tax levelPrimates
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.8549438-CDS-M-pyrifera_M_contig65044:981..13351622816538.8549438-CDS-M-pyrifera_M_contig65044:981..1335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65044 982..1335 +
1692278034.9741132-CDS-M-pyrifera_M_contig65044:981..13351692278034.9741132-CDS-M-pyrifera_M_contig65044:981..1335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65044 982..1335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65044.15843.1prot_M-pyrifera_M_contig65044.15843.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65044 982..1335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65044.15843.1

>prot_M-pyrifera_M_contig65044.15843.1 ID=prot_M-pyrifera_M_contig65044.15843.1|Name=mRNA_M-pyrifera_M_contig65044.15843.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
GSDINAADKARWTPLHCACESGFLDVVEYLVKAGASVNVLSDSFTIPLHY
LVRKPTNDSLWERHKRAIKLMLDEGANVNAQDYFGHTLLHGACARGRDPR
CVQFLVEQGAAPDVPDE*
back to top

mRNA from alignment at M-pyrifera_M_contig65044:982..1335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65044.15843.1 ID=mRNA_M-pyrifera_M_contig65044.15843.1|Name=mRNA_M-pyrifera_M_contig65044.15843.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig65044:982..1335+ (Macrocystis pyrifera P11B4 male)
GGGAGTGACATCAATGCTGCGGACAAGGCTCGCTGGACCCCTCTACACTG TGCTTGCGAGTCTGGATTCCTAGACGTCGTTGAGTATCTCGTCAAGGCAG GCGCATCAGTCAATGTGCTCTCGGATAGCTTCACTATCCCTTTGCACTAC CTAGTTCGCAAGCCCACCAACGACTCCTTGTGGGAGAGACACAAGAGAGC CATCAAACTCATGCTCGATGAAGGAGCCAACGTCAACGCTCAGGACTACT TTGGACACACACTGCTGCATGGAGCCTGCGCTCGAGGGCGAGACCCCAGA TGCGTGCAGTTCCTCGTCGAGCAAGGAGCAGCGCCTGACGTTCCTGACGA GTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig65044:982..1335+

>mRNA_M-pyrifera_M_contig65044.15843.1 ID=mRNA_M-pyrifera_M_contig65044.15843.1|Name=mRNA_M-pyrifera_M_contig65044.15843.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig65044:982..1335+ (Macrocystis pyrifera P11B4 male)
GGGAGTGACATCAATGCTGCGGACAAGGCTCGCTGGACCCCTCTACACTG
TGCTTGCGAGTCTGGATTCCTAGACGTCGTTGAGTATCTCGTCAAGGCAG
GCGCATCAGTCAATGTGCTCTCGGATAGCTTCACTATCCCTTTGCACTAC
CTAGTTCGCAAGCCCACCAACGACTCCTTGTGGGAGAGACACAAGAGAGC
CATCAAACTCATGCTCGATGAAGGAGCCAACGTCAACGCTCAGGACTACT
TTGGACACACACTGCTGCATGGAGCCTGCGCTCGAGGGCGAGACCCCAGA
TGCGTGCAGTTCCTCGTCGAGCAAGGAGCAGCGCCTGACGTTCCTGACGA
GTGAGGGAGTGACATCAATGCTGCGGACAAGGCTCGCTGGACCCCTCTAC
ACTGTGCTTGCGAGTCTGGATTCCTAGACGTCGTTGAGTATCTCGTCAAG
GCAGGCGCATCAGTCAATGTGCTCTCGGATAGCTTCACTATCCCTTTGCA
CTACCTAGTTCGCAAGCCCACCAACGACTCCTTGTGGGAGAGACACAAGA
GAGCCATCAAACTCATGCTCGATGAAGGAGCCAACGTCAACGCTCAGGAC
TACTTTGGACACACACTGCTGCATGGAGCCTGCGCTCGAGGGCGAGACCC
CAGATGCGTGCAGTTCCTCGTCGAGCAAGGAGCAGCGCCTGACGTTCCTG
ACGAGTGA
back to top