mRNA_M-pyrifera_M_contig65023.15842.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65023.15842.1
Unique NamemRNA_M-pyrifera_M_contig65023.15842.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65023.15842.1 vs. uniprot
Match: A0A383VPI3_TETOB (Amidohydro-rel domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VPI3_TETOB)

HSP 1 Score: 86.3 bits (212), Expect = 2.800e-16
Identity = 61/176 (34.66%), Postives = 90/176 (51.14%), Query Frame = 1 
Query:    1 RGPSGRVLSPVVHFHAGASLGRGWGPEDPDGGLAEQIIYGSATFGGNDCPGSETPATGRSKAAEIASNLNRYFGYQVWGCDLLLDAKGRVLLTDLNTGRYNGGAIPKLCAQLRAPLATRYRSWKTHVPEGITADIFCRRLRKANLLL-RNSTSRGVIPLVFPPGGTAQFLMLATNE 525
            R P G VLSP +H+  G  LG+G         L +QI+ G+   G      S+  AT    A ++ +++ R    +  G    L   G+ +LTD+N+GR+NG   PKL  +L AP    Y  WK    E IT   F +RL++A L       +RGV P++F PG + QF+ +A +E
Sbjct:  792 RAPDGIVLSPALHYMEGQLLGQG---------LVDQIMVGTGYSGWRPSVASKAFAT---TAVKVTNDILRAIQPRGPGGFDFLSVGGKPVLTDVNSGRFNGAHSPKLFVELYAPRQAFY-VWKQKPGERITVWQFWQRLQEAGLAFWPGRDTRGVFPMIFLPGLSGQFIAIADSE 954
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BLAST of mRNA_M-pyrifera_M_contig65023.15842.1 vs. uniprot
Match: A0A7S0VSF6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSF6_9CRYP)

HSP 1 Score: 69.7 bits (169), Expect = 1.490e-10
Identity = 56/180 (31.11%), Postives = 80/180 (44.44%), Query Frame = 1 
Query:    7 PSGRVLSPVVHFHAGASLGRGWGPEDPDGGLAEQIIYGSATFGGNDCPGSETPATGRSKAAEIASNLNRYFGYQVWGCDLLLDAKGRVLLTDLNTGRYNGGAIPKLCAQLRAPLATRYRSWKTHVPEGITADIFCRRLRKANLLLRNSTSR-GVIPLVFPPGGTAQFLMLATNEKGFLEL 543
            P G VLSP +H++ G  +G+G         L +QI+ G++  G      S  P   +S A    S L  Y   +  G    L   G  +L+D+NTGR+NG   PKL     AP  T Y  WK      +    F  +L K  +      SR GV PL++  G +  F+ +A   +   EL
Sbjct:  715 PDGMVLSPAMHYNEGVLIGKG---------LVDQIMVGTSYMGWRK---SNAPKAFQSTANRYMSTLLEYIKPKGPGGVDYLSVNGLPVLSDINTGRFNGAHSPKLFMSTYAPDKTFY-CWKGIPGPHLNIYTFWNKLVKQGIAFVPGKSRTGVFPLLYLRGLSGMFIAVADTSEQADEL 881
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BLAST of mRNA_M-pyrifera_M_contig65023.15842.1 vs. uniprot
Match: L1J0Q6_GUITC (Amidohydro-rel domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J0Q6_GUITC)

HSP 1 Score: 62.0 bits (149), Expect = 6.400e-8
Identity = 53/186 (28.49%), Postives = 83/186 (44.62%), Query Frame = 1 
Query:    1 RGPSGRVLSPVVHFHAGASLGRGWGPEDPDGGLAEQIIYGSATFGGNDCPGSETPATGRSKAAEIASNLNRYFGYQVW--------GCDLLLDAKGRVLLTDLNTGRYNGGAIPKLCAQLRAPLATRYRSWKTHVPEGITADIFCRRLRKANL-LLRNSTSRGVIPLVFPPGGTAQFLMLA-TNEK 528
            + P G VLSP +H++ G  +G+G         L +QI+ G++  G           +G +K  +     NRY    +         G D L    G  +L+D+NTGR+NG   PKL     AP ++ Y  WKT          F  RL    +  +   ++RG+ PL+F  G +  ++    TNE+
Sbjct:  635 KAPDGLVLSPAMHYNEGVLIGKG---------LVDQIMVGTSYMGWR--------KSGATKVFQ--KTANRYMQNVIQATKPRGPGGVDFL-SVNGLPVLSDINTGRFNGAHFPKLFQARYAPDSSFY-CWKTAPALDFDVYAFWSRLVSNGIAFIPGKSTRGIFPLLFLRGLSGLYVAFGDTNEE 799
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BLAST of mRNA_M-pyrifera_M_contig65023.15842.1 vs. uniprot
Match: A0A7S4KUR7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KUR7_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 1.730e-6
Identity = 49/198 (24.75%), Postives = 85/198 (42.93%), Query Frame = 1 
Query:    1 RGPSGRVLSPVVHFHAGASLGRGWGPEDPDGGLAEQIIYGSATFGGNDCPGSETPATGRSKAAE-----IASNLNRYFGYQVWGCDLLLDAKGRVLLTDLNTGRYNGGAIPKLCAQLRAPLATRYRSWKTHVPEGITADIFCRRLRKANLLLRNSTS---------RGVIPLVFPPGGTAQFLMLATNEKGFLELEER 552
            R   G VLSP  H+            E   G + +QI+ G+  +GG        PA G +K  +     I   ++R       G D L+ +KG+++L+D+NTGR+NG   PK   +     +  +  WK   P  +   ++  RL K  +    S           +G+ P+++  G + QF+ L  +      L+++
Sbjct:  180 RADDGVVLSPAAHYME----------EKLIGDMVDQIMIGTG-YGG------WRPALGPNKLNKEGVRIINRLIDRMQPRGPGGFDYLI-SKGKLVLSDVNTGRFNGSHFPKFFVKNFGHPSQTWICWKKRPPADLPVTVWYFRLMKKGIAFTPSKDSHDSVAPPKQGIFPIIYARGRSGQFVSLGKDTSAAFALQQK 359
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65023.15842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A383VPI3_TETOB2.800e-1634.66Amidohydro-rel domain-containing protein n=1 Tax=T... [more]
A0A7S0VSF6_9CRYP1.490e-1031.11Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1J0Q6_GUITC6.400e-828.49Amidohydro-rel domain-containing protein n=1 Tax=G... [more]
A0A7S4KUR7_9EUKA1.730e-624.75Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65023contigM-pyrifera_M_contig65023:790..1341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog55529.EKX35003
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Amidohydrolase family
EggNOG OGs29DFN@1,2RKJK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.8161232-CDS-M-pyrifera_M_contig65023:789..13411622816538.8161232-CDS-M-pyrifera_M_contig65023:789..1341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65023 790..1341 -
1692278034.9597874-CDS-M-pyrifera_M_contig65023:789..13411692278034.9597874-CDS-M-pyrifera_M_contig65023:789..1341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65023 790..1341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65023.15842.1prot_M-pyrifera_M_contig65023.15842.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65023 790..1341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65023.15842.1

>prot_M-pyrifera_M_contig65023.15842.1 ID=prot_M-pyrifera_M_contig65023.15842.1|Name=mRNA_M-pyrifera_M_contig65023.15842.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
RGPSGRVLSPVVHFHAGASLGRGWGPEDPDGGLAEQIIYGSATFGGNDCP
GSETPATGRSKAAEIASNLNRYFGYQVWGCDLLLDAKGRVLLTDLNTGRY
NGGAIPKLCAQLRAPLATRYRSWKTHVPEGITADIFCRRLRKANLLLRNS
TSRGVIPLVFPPGGTAQFLMLATNEKGFLELEER
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mRNA from alignment at M-pyrifera_M_contig65023:790..1341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65023.15842.1 ID=mRNA_M-pyrifera_M_contig65023.15842.1|Name=mRNA_M-pyrifera_M_contig65023.15842.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig65023:790..1341- (Macrocystis pyrifera P11B4 male)
CGTGGCCCTTCTGGCCGCGTACTCTCTCCAGTGGTGCATTTCCACGCAGG
AGCTTCACTCGGCAGAGGGTGGGGACCTGAGGATCCCGACGGAGGTCTGG
CCGAGCAAATCATCTACGGCTCCGCCACCTTCGGCGGGAACGACTGTCCG
GGCAGTGAAACGCCCGCCACAGGGAGATCTAAGGCTGCCGAAATTGCCTC
GAACCTCAACCGCTACTTTGGCTACCAAGTCTGGGGCTGTGACTTGCTCC
TCGACGCCAAGGGCAGAGTATTGCTGACCGACCTGAACACGGGTCGCTAC
AACGGAGGCGCCATTCCAAAGCTCTGCGCGCAGCTCAGAGCGCCACTGGC
CACTCGCTACCGGTCTTGGAAGACGCACGTACCCGAAGGAATCACGGCCG
ACATTTTTTGTCGCCGTCTCCGCAAGGCCAACTTGCTCCTCCGAAACTCC
ACCTCACGAGGCGTCATCCCACTCGTCTTCCCTCCAGGAGGCACCGCACA
GTTCCTCATGCTCGCCACCAACGAGAAAGGGTTCCTGGAGCTCGAAGAGC
GG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65023:790..1341-

>mRNA_M-pyrifera_M_contig65023.15842.1 ID=mRNA_M-pyrifera_M_contig65023.15842.1|Name=mRNA_M-pyrifera_M_contig65023.15842.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig65023:790..1341- (Macrocystis pyrifera P11B4 male)
CGTGGCCCTTCTGGCCGCGTACTCTCTCCAGTGGTGCATTTCCACGCAGG
AGCTTCACTCGGCAGAGGGTGGGGACCTGAGGATCCCGACGGAGGTCTGG
CCGAGCAAATCATCTACGGCTCCGCCACCTTCGGCGGGAACGACTGTCCG
GGCAGTGAAACGCCCGCCACAGGGAGATCTAAGGCTGCCGAAATTGCCTC
GAACCTCAACCGCTACTTTGGCTACCAAGTCTGGGGCTGTGACTTGCTCC
TCGACGCCAAGGGCAGAGTATTGCTGACCGACCTGAACACGGGTCGCTAC
AACGGAGGCGCCATTCCAAAGCTCTGCGCGCAGCTCAGAGCGCCACTGGC
CACTCGCTACCGGTCTTGGAAGACGCACGTACCCGAAGGAATCACGGCCG
ACATTTTTTGTCGCCGTCTCCGCAAGGCCAACTTGCTCCTCCGAAACTCC
ACCTCACGAGGCGTCATCCCACTCGTCTTCCCTCCAGGAGGCACCGCACA
GTTCCTCATGCTCGCCACCAACGAGAAAGGGTTCCTGGAGCTCGAAGAGC
GGCGTGGCCCTTCTGGCCGCGTACTCTCTCCAGTGGTGCATTTCCACGCA
GGAGCTTCACTCGGCAGAGGGTGGGGACCTGAGGATCCCGACGGAGGTCT
GGCCGAGCAAATCATCTACGGCTCCGCCACCTTCGGCGGGAACGACTGTC
CGGGCAGTGAAACGCCCGCCACAGGGAGATCTAAGGCTGCCGAAATTGCC
TCGAACCTCAACCGCTACTTTGGCTACCAAGTCTGGGGCTGTGACTTGCT
CCTCGACGCCAAGGGCAGAGTATTGCTGACCGACCTGAACACGGGTCGCT
ACAACGGAGGCGCCATTCCAAAGCTCTGCGCGCAGCTCAGAGCGCCACTG
GCCACTCGCTACCGGTCTTGGAAGACGCACGTACCCGAAGGAATCACGGC
CGACATTTTTTGTCGCCGTCTCCGCAAGGCCAACTTGCTCCTCCGAAACT
CCACCTCACGAGGCGTCATCCCACTCGTCTTCCCTCCAGGAGGCACCGCA
CAGTTCCTCATGCTCGCCACCAACGAGAAAGGGTTCCTGGAGCTCGAAGA
GCGG
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