mRNA_M-pyrifera_M_contig14181.6197.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14181.6197.1
Unique NamemRNA_M-pyrifera_M_contig14181.6197.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.080e-26
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNFL 159
            CCVC+ RPRDAALIHGKT+HQACCYDCA ELFERGLPCPYCRQ IAHVVKNF+
Sbjct:  564 CCVCLDRPRDAALIHGKTAHQACCYDCAVELFERGLPCPYCRQPIAHVVKNFV 616
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: R7V6A3_CAPTE (RING-type domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V6A3_CAPTE)

HSP 1 Score: 75.9 bits (185), Expect = 3.590e-17
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNFL 159
            C +CM +P++A++IHGKT HQ CCY CA  L  RG PCP CR+ I  V+KNF+
Sbjct:    1 CVICMQKPKEASIIHGKTGHQICCYVCAKRLRRRGKPCPVCRRPIQKVIKNFI 53
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: A0A8J1TC64_OWEFU (E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TC64_OWEFU)

HSP 1 Score: 79.0 bits (193), Expect = 8.040e-16
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNFL 159
            C +C+ +P+DA++IHGKT HQ CCY CA +L +R  PCP CR+ I +V+KNFL
Sbjct:  858 CAICLTKPKDASIIHGKTGHQVCCYKCAKKLLKRRKPCPVCRRPIENVIKNFL 910
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: A0A1S3KAV1_LINUN (E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KAV1_LINUN)

HSP 1 Score: 70.9 bits (172), Expect = 5.640e-13
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNFL 159
            C +CM +P++A++IHGKT HQ  CY CA  L   G PCP CR+ I  V+KNFL
Sbjct:  852 CVICMSKPKEASIIHGKTGHQVTCYSCAKRLKWSGRPCPICRRPIQKVIKNFL 904
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: A0A3S0ZMN8_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZMN8_ELYCH)

HSP 1 Score: 68.6 bits (166), Expect = 3.670e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNF 156
            C VC+VRP+ A++IHGKT HQ CCY CA +L ++   CP CR+ I  V++N+
Sbjct:  646 CVVCLVRPKTASIIHGKTGHQVCCYHCAKKLKKQRRACPICRRPIQKVIRNY 697
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: A0A6A0H0E1_HYAAZ (RING-type domain-containing protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H0E1_HYAAZ)

HSP 1 Score: 67.8 bits (164), Expect = 6.850e-12
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNFL 159
            C +C  RP+DAA+IHGK SHQA CY CA  LF R   CP CR+ I  + KN +
Sbjct:  729 CIMCQDRPKDAAIIHGKISHQATCYRCAKTLFNRKQRCPVCRRKILRIAKNII 781
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: A0A8B7NGC1_HYAAZ (platelet binding protein GspB-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NGC1_HYAAZ)

HSP 1 Score: 67.8 bits (164), Expect = 6.880e-12
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNFL 159
            C +C  RP+DAA+IHGK SHQA CY CA  LF R   CP CR+ I  + KN +
Sbjct: 1366 CIMCQDRPKDAAIIHGKISHQATCYRCAKTLFNRKQRCPVCRRKILRIAKNII 1418
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: A0A851F4Y4_PITSO (Protein Mdm4 (Fragment) n=1 Tax=Pitta sordida TaxID=9163 RepID=A0A851F4Y4_PITSO)

HSP 1 Score: 63.9 bits (154), Expect = 1.550e-10
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNFL 159
            CCVC+ RPRD  ++HG+T+H   CY CA  L ++  PCP CR+ I  V++ F+
Sbjct:  432 CCVCLHRPRDGNIVHGRTAHLVACYRCARMLKKKKSPCPVCRKEIGMVIRIFM 484
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: A0A2B4RC15_STYPI (Protein Mdm4 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RC15_STYPI)

HSP 1 Score: 63.2 bits (152), Expect = 2.740e-10
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNF 156
            C +C+++PR+A+++HG+T H  CC  CA  L E    CP CR+ I  VVKNF
Sbjct:  313 CIICLMQPRNASIVHGRTGHLVCCIGCAERLKEEKKKCPVCRKKIKLVVKNF 364
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BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Match: A0A8J5MPD9_HOMAM (Mdm4-like n=3 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MPD9_HOMAM)

HSP 1 Score: 62.8 bits (151), Expect = 3.980e-10
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 CCVCMVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNFL 159
            C +C +RP++AA+IHG+ SHQA CY CA  L   G  CP CR+ I  V K+ +
Sbjct:  744 CSICCLRPKNAAIIHGRLSHQATCYQCARRLLNSGSRCPVCRRKIHMVCKHII 796
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14181.6197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE2.080e-2688.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R7V6A3_CAPTE3.590e-1756.60RING-type domain-containing protein (Fragment) n=1... [more]
A0A8J1TC64_OWEFU8.040e-1656.60E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Owenia fu... [more]
A0A1S3KAV1_LINUN5.640e-1354.72E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Lingula u... [more]
A0A3S0ZMN8_ELYCH3.670e-1251.92Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
A0A6A0H0E1_HYAAZ6.850e-1254.72RING-type domain-containing protein n=1 Tax=Hyalel... [more]
A0A8B7NGC1_HYAAZ6.880e-1254.72platelet binding protein GspB-like n=1 Tax=Hyalell... [more]
A0A851F4Y4_PITSO1.550e-1047.17Protein Mdm4 (Fragment) n=1 Tax=Pitta sordida TaxI... [more]
A0A2B4RC15_STYPI2.740e-1048.08Protein Mdm4 n=2 Tax=Stylophora pistillata TaxID=5... [more]
A0A8J5MPD9_HOMAM3.980e-1049.06Mdm4-like n=3 Tax=Homarus americanus TaxID=6706 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14181contigM-pyrifera_M_contig14181:6496..6657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.6
Seed ortholog evalue9.7e-10
Seed eggNOG ortholog10224.XP_006821905.1
Preferred nameMDM4
KEGG koko:K06643,ko:K10127
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000075,GO:0000077,GO:0000122,GO:0000278,GO:0001666,GO:0002027,GO:0003007,GO:0003170,GO:0003171,GO:0003179,GO:0003181,GO:0003197,GO:0003203,GO:0003205,GO:0003230,GO:0003231,GO:0003279,GO:0003281,GO:0003283,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007507,GO:0008016,GO:0008150,GO:0008152,GO:0008270,GO:0008283,GO:0008284,GO:0008285,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010948,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0022402,GO:0022607,GO:0023051,GO:0023052,GO:0030330,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031571,GO:0031647,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033554,GO:0035556,GO:0036211,GO:0036293,GO:0036294,GO:0042127,GO:0042176,GO:0042177,GO:0042221,GO:0042770,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044057,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045023,GO:0045786,GO:0045787,GO:0045892,GO:0045930,GO:0045934,GO:0046872,GO:0046914,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0051726,GO:0060255,GO:0060485,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070887,GO:0071156,GO:0071158,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072132,GO:0072331,GO:0072359,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0140096,GO:1901564,GO:1901796,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902679,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:1903507,GO:1903522,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
EggNOG free text desc.G0 to G1 transition
EggNOG OGs2C54B@1,2QQNV@2759,39R5S@33154,3BEE8@33208,3CY9Z@33213
EC2.3.2.27
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04131
Exons1
Model size162
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.4961758-CDS-M-pyrifera_M_contig14181:6495..66451622815837.4961758-CDS-M-pyrifera_M_contig14181:6495..6645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14181 6496..6645 -
1692277598.5981715-CDS-M-pyrifera_M_contig14181:6495..66451692277598.5981715-CDS-M-pyrifera_M_contig14181:6495..6645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14181 6496..6645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.5082703-UTR-M-pyrifera_M_contig14181:6645..66571622815837.5082703-UTR-M-pyrifera_M_contig14181:6645..6657Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14181 6646..6657 -
1692277598.6082506-UTR-M-pyrifera_M_contig14181:6645..66571692277598.6082506-UTR-M-pyrifera_M_contig14181:6645..6657Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14181 6646..6657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14181.6197.1prot_M-pyrifera_M_contig14181.6197.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14181 6496..6645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14181.6197.1

>prot_M-pyrifera_M_contig14181.6197.1 ID=prot_M-pyrifera_M_contig14181.6197.1|Name=mRNA_M-pyrifera_M_contig14181.6197.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MVRPRDAALIHGKTSHQACCYDCASELFERGLPCPYCRQSIAHVVKNFL*
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mRNA from alignment at M-pyrifera_M_contig14181:6496..6657-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14181.6197.1 ID=mRNA_M-pyrifera_M_contig14181.6197.1|Name=mRNA_M-pyrifera_M_contig14181.6197.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig14181:6496..6657- (Macrocystis pyrifera P11B4 male)
TGCTGCGTGTGCATGGTCCGTCCCAGGGACGCCGCGCTGATCCACGGGAA
AACCTCGCACCAGGCCTGTTGCTACGACTGCGCGTCGGAGCTGTTCGAGC
GCGGTCTGCCTTGCCCCTACTGCCGCCAGTCCATCGCTCACGTGGTGAAG
AATTTTCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14181:6496..6657-

>mRNA_M-pyrifera_M_contig14181.6197.1 ID=mRNA_M-pyrifera_M_contig14181.6197.1|Name=mRNA_M-pyrifera_M_contig14181.6197.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig14181:6496..6657- (Macrocystis pyrifera P11B4 male)
ATGGTCCGTCCCAGGGACGCCGCGCTGATCCACGGGAAAACCTCGCACCA
GGCCTGTTGCTACGACTGCGCGTCGGAGCTGTTCGAGCGCGGTCTGCCTT
GCCCCTACTGCCGCCAGTCCATCGCTCACGTGGTGAAGAATTTTCTCTGA
ATGGTCCGTCCCAGGGACGCCGCGCTGATCCACGGGAAAACCTCGCACCA
GGCCTGTTGCTACGACTGCGCGTCGGAGCTGTTCGAGCGCGGTCTGCCTT
GCCCCTACTGCCGCCAGTCCATCGCTCACGTGGTGAAGAATTTTCTCTGA
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