mRNA_M-pyrifera_M_contig14174.6195.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14174.6195.1
Unique NamemRNA_M-pyrifera_M_contig14174.6195.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.990e-27
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    1 QAVSTVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTMPR 162
            QAVSTVDPNVK GDFLDIRPYVK KLIPGG RDECRYVDGIVFRKNVTHKTMPR
Sbjct:  408 QAVSTVDPNVKEGDFLDIRPYVKMKLIPGGHRDECRYVDGIVFRKNVTHKTMPR 461          
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: A0A482SVF7_9ARCH (FYVE-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVF7_9ARCH)

HSP 1 Score: 84.7 bits (208), Expect = 2.520e-18
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 QAVSTVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTM 156
            + VS+VDP+VKAGD +DIRPYVK K+IPGG   EC Y+DG+VFRKNV HK M
Sbjct:  192 EVVSSVDPDVKAGDSIDIRPYVKVKVIPGGMMSECIYIDGVVFRKNVAHKKM 243          
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: F0YMC6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMC6_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 5.970e-15
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 QAVSTVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTMPR 162
            +A  TV+P+V+  D +DIRPY+K KLIPGG    CRYVDGIVFRK+V HK M +
Sbjct:  189 EACKTVNPDVRRADSMDIRPYIKIKLIPGGTLSGCRYVDGIVFRKDVVHKMMKK 242          
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: A0A1Z5KGF3_FISSO (1-phosphatidylinositol-3-phosphate 5-kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGF3_FISSO)

HSP 1 Score: 75.9 bits (185), Expect = 1.120e-14
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   10 STVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTMPRF 165
            +TV+PNV+ GD LDIRPYVK K I GG   +C Y+ GIVFRK VTHK M +F
Sbjct:  286 ATVEPNVRRGDLLDIRPYVKIKRIAGGSYSDCAYLSGIVFRKTVTHKRMAKF 337          
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: A0A448ZKD0_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKD0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.120e-14
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   10 STVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTMPR 162
            +TVD N+K GD LD+RPYVK K+IPGG  D+C Y+ GI FRK  T K MPR
Sbjct:  780 ATVDTNIKRGDMLDVRPYVKIKVIPGGSCDDCAYISGIAFRKTGTSKQMPR 830          
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: A0A0F7SQK7_PHARH (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SQK7_PHARH)

HSP 1 Score: 75.9 bits (185), Expect = 1.120e-14
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 QAVSTVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTMPRFGK 171
            Q  ++V PN+KAGD +D+R YVK K +PGGR  E  YVDG+V  KNV HK MPR  K
Sbjct:  945 QVSTSVQPNIKAGDDIDVRTYVKIKRVPGGRISESEYVDGVVITKNVAHKKMPRIYK 1001          
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: A0A8J2X5N4_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5N4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.850e-14
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 QAVSTVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTM 156
            +A  TV PNV+  D +DIRPYVK K+IPGG   ECRYVDGIVF K V HK M
Sbjct:  355 EASDTVTPNVRIADTMDIRPYVKIKVIPGGSYLECRYVDGIVFSKGVVHKKM 406          
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: A0A7S3DT76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DT76_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.560e-14
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   10 STVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTMPR 162
            +TV+PNV+ GD LDIRPY K K+IPGG   +C Y+ G+VFRK V+HK M R
Sbjct:   94 ATVEPNVRNGDLLDIRPYSKIKVIPGGSYRDCAYLSGVVFRKTVSHKQMAR 144          
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: A0A7S2EEI3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EEI3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.240e-14
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   10 STVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTMPR 162
            +TV+PNVK GD LDIRPY K K+I GG  ++C Y+ GIVF KNV+HK M R
Sbjct:  277 ATVNPNVKKGDLLDIRPYCKIKVIAGGSINDCAYMSGIVFHKNVSHKKMAR 327          
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Match: A0A7S4VWE2_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VWE2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.260e-14
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   10 STVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHKTMPR 162
            +TV+PNVK GD LDIRPY K K+I GG  ++C Y+ GIVF KNV+HK M R
Sbjct:  176 ATVNPNVKKGDLLDIRPYCKIKVIAGGSINDCAYMSGIVFHKNVSHKKMAR 226          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14174.6195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Z3_ECTSI3.990e-2794.441-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A482SVF7_9ARCH2.520e-1869.23FYVE-type domain-containing protein n=1 Tax=archae... [more]
F0YMC6_AURAN5.970e-1561.11Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Z5KGF3_FISSO1.120e-1463.461-phosphatidylinositol-3-phosphate 5-kinase n=2 Ta... [more]
A0A448ZKD0_9STRA1.120e-1462.751-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A0F7SQK7_PHARH1.120e-1457.891-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A8J2X5N4_9STRA2.850e-1465.381-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S3DT76_9STRA4.560e-1460.78Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S2EEI3_9STRA7.240e-1462.75Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VWE2_9STRA7.260e-1462.751-phosphatidylinositol-3-phosphate 5-kinase n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14174contigM-pyrifera_M_contig14174:113..283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue4.3e-22
Seed eggNOG ortholog2880.D7G3Z3
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0230@2759
EC2.7.1.150
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.3694873-CDS-M-pyrifera_M_contig14174:112..2831622815837.3694873-CDS-M-pyrifera_M_contig14174:112..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14174 113..283 -
1692277598.5224519-CDS-M-pyrifera_M_contig14174:112..2831692277598.5224519-CDS-M-pyrifera_M_contig14174:112..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14174 113..283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14174.6195.1prot_M-pyrifera_M_contig14174.6195.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14174 113..283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14174.6195.1

>prot_M-pyrifera_M_contig14174.6195.1 ID=prot_M-pyrifera_M_contig14174.6195.1|Name=mRNA_M-pyrifera_M_contig14174.6195.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
QAVSTVDPNVKAGDFLDIRPYVKTKLIPGGRRDECRYVDGIVFRKNVTHK
TMPRFGK
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mRNA from alignment at M-pyrifera_M_contig14174:113..283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14174.6195.1 ID=mRNA_M-pyrifera_M_contig14174.6195.1|Name=mRNA_M-pyrifera_M_contig14174.6195.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig14174:113..283- (Macrocystis pyrifera P11B4 male)
CAGGCGGTGAGCACGGTGGACCCCAATGTCAAAGCTGGCGACTTCCTCGA CATCAGGCCCTACGTGAAGACCAAGCTCATTCCAGGGGGACGCCGCGACG AGTGCCGCTACGTCGACGGCATCGTGTTCAGAAAAAACGTCACCCACAAG ACCATGCCCAGGTTTGGAAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14174:113..283-

>mRNA_M-pyrifera_M_contig14174.6195.1 ID=mRNA_M-pyrifera_M_contig14174.6195.1|Name=mRNA_M-pyrifera_M_contig14174.6195.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig14174:113..283- (Macrocystis pyrifera P11B4 male)
CAGGCGGTGAGCACGGTGGACCCCAATGTCAAAGCTGGCGACTTCCTCGA
CATCAGGCCCTACGTGAAGACCAAGCTCATTCCAGGGGGACGCCGCGACG
AGTGCCGCTACGTCGACGGCATCGTGTTCAGAAAAAACGTCACCCACAAG
ACCATGCCCAGGTTTGGAAAACAGGCGGTGAGCACGGTGGACCCCAATGT
CAAAGCTGGCGACTTCCTCGACATCAGGCCCTACGTGAAGACCAAGCTCA
TTCCAGGGGGACGCCGCGACGAGTGCCGCTACGTCGACGGCATCGTGTTC
AGAAAAAACGTCACCCACAAGACCATGCCCAGGTTTGGAAAA
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