mRNA_M-pyrifera_M_contig14172.6194.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14172.6194.1
Unique NamemRNA_M-pyrifera_M_contig14172.6194.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig14172.6194.1 vs. uniprot
Match: D8LDA7_ECTSI (LanC lantibiotic synthetase component C-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA7_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.670e-27
Identity = 115/175 (65.71%), Postives = 122/175 (69.71%), Query Frame = 1 
Query:    1 LAEDEPRSHDVLNGLAGYLSALLFVRSNTRDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKGRGPSLGGERGGKGETAVGGGVAQTTQAQSQVAXXXXXXXXXXXXTVEASEG--YGGVLTYEWHGKMYLGAARGISGILFVLMQALQTVYGESLLVEARGGEGNDRADLPPQ 519
            L+EDE RSHDVLNGLAGYLSALLFVR+NTR+      XXXXXXXXXXXXXXXXXXXXXXX                                    XXXXXXXXXXXX  E +EG  YGGVLTYEWHGKMYLGAARG+SGILFVLMQALQTVYG+SLLV AR G+G D  DLPPQ
Sbjct:  175 LSEDELRSHDVLNGLAGYLSALLFVRANTRESCEGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDNEGMEYGGVLTYEWHGKMYLGAARGVSGILFVLMQALQTVYGDSLLVGARTGDGPDTEDLPPQ 345
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BLAST of mRNA_M-pyrifera_M_contig14172.6194.1 vs. uniprot
Match: A0A6H5KQG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQG0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.190e-9
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  346 YGGVLTYEWHGKMYLGAARGISGILFVLMQALQTVYGESLL 468
            YGGVLTYEWHGKMYLGAARG+SGILFVLMQ      GE LL
Sbjct:  312 YGGVLTYEWHGKMYLGAARGVSGILFVLMQ------GEPLL 346
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14172.6194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDA7_ECTSI2.670e-2765.71LanC lantibiotic synthetase component C-like 2 n=1... [more]
A0A6H5KQG0_9PHAE2.190e-980.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14172contigM-pyrifera_M_contig14172:4242..7965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue8.3e-24
Seed eggNOG ortholog2880.D8LDA7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glutathione binding
EggNOG OGsKOG2787@1,KOG2787@2759
Ec32 ortholog descriptionLanC lantibiotic synthetase component C-like 2
Ec32 orthologEc-25_001920.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size519
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14172.6194.1prot_M-pyrifera_M_contig14172.6194.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14172 4242..7965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.3197842-CDS-M-pyrifera_M_contig14172:4241..43331622815837.3197842-CDS-M-pyrifera_M_contig14172:4241..4333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14172 4242..4333 +
1692277598.487796-CDS-M-pyrifera_M_contig14172:4241..43331692277598.487796-CDS-M-pyrifera_M_contig14172:4241..4333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14172 4242..4333 +
1622815837.3311398-CDS-M-pyrifera_M_contig14172:7023..73671622815837.3311398-CDS-M-pyrifera_M_contig14172:7023..7367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14172 7024..7367 +
1692277598.5044978-CDS-M-pyrifera_M_contig14172:7023..73671692277598.5044978-CDS-M-pyrifera_M_contig14172:7023..7367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14172 7024..7367 +
1622815837.3411772-CDS-M-pyrifera_M_contig14172:7882..79651622815837.3411772-CDS-M-pyrifera_M_contig14172:7882..7965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14172 7883..7965 +
1692277598.5140312-CDS-M-pyrifera_M_contig14172:7882..79651692277598.5140312-CDS-M-pyrifera_M_contig14172:7882..7965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14172 7883..7965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14172.6194.1

>prot_M-pyrifera_M_contig14172.6194.1 ID=prot_M-pyrifera_M_contig14172.6194.1|Name=mRNA_M-pyrifera_M_contig14172.6194.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
LAEDEPRSHDVLNGLAGYLSALLFVRSNTRDGGGGSGGGGSGGGGGGSGG
GGSGSRRRRRGGKGRGPSLGGERGGKGETAVGGGVAQTTQAQSQVAASAA
AAVAAAAATVEASEGYGGVLTYEWHGKMYLGAARGISGILFVLMQALQTV
YGESLLVEARGGEGNDRADLPPQ
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mRNA from alignment at M-pyrifera_M_contig14172:4242..7965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14172.6194.1 ID=mRNA_M-pyrifera_M_contig14172.6194.1|Name=mRNA_M-pyrifera_M_contig14172.6194.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3724bp|location=Sequence derived from alignment at M-pyrifera_M_contig14172:4242..7965+ (Macrocystis pyrifera P11B4 male)
CTAGCGGAGGACGAGCCGCGATCGCACGACGTTCTCAATGGGCTGGCGGG
TTATCTGAGCGCTCTGCTCTTCGTCAGGTCGAACACGCGAGAGTGAGTTG
GGTTTGTGAGTTGTGTGAATTGGTTGTGTGTGGTTTATTGTCCTTGTGCT
GTTGGCGGTTACCCCCTTTTTCGTGCCTGCGTGTGTGTTTGTTTGTCTCC
TTGTGATGCATGTTGATTTCGCTCCCTGTTGTTGTTTCTGTTGTTGTGGC
TTGTTTATTTGCGTTCGACCAACCAACGAATCAAAACCCACGAGCCAATC
AATCAATCAAGTGACGATCACATACGCAAACCCACCTACCAACCAACCAG
AGTATCAATGCACCTAGCAGACAAACCAACCACCCAACCAACAAACGATC
AACCAACCGACCTAACGAACAACCAATCCACCGACGGACCAACAACCATC
CAGTCAACCAACCAACCAACCAACCGATGAAACATCCATACCCACAAACA
AAGCAACCAATGCACCCAACCGAAAGGTCGAATCAACCAACCTAACAAGC
AACTAACGGACCAACAGAACAACCACCTACCTAACGATCAACCAACCAAC
TAACCAACCGACCGACTAAGTTATGAAAAACCAAAAACTCCACACACTTT
ATAAACTTTTGATAACTGAGCGGATATTTTTCGGGGCTAAAATACCTGAG
AATTGTGTGTGATATTTTTTCGCAGTAGAAGGTATATTAAGCAGCAAAGG
GGGTTCAAAACTTAACGAAATCACCCCATACCGCAATTTTATGTTTGCAT
TCAACGCGTGGTAACGATAGGAATATAACACTTTTGGGGTCCAAACATTT
CTGACTGCCAGGGGCGAGGGTGTACTCGATAGGAGAGATGTACTCGATCT
CATGCATGGCCGTAGTCGCATGACCATAGACCTCCGTATCNNNNNNNNNN
CAGCAGGTCGGGTTTTCACCGACCAGGTAGACTCTGCTTGCACCAAGCGC
GAAGCGCCGTGAGGTGTCCGGCGAGTCGCATGAAGGGTGAGCTTCATCCT
ACCAAGAACCGCTTTAGAGGCGGATTGTCTTGCATGTGGATGACAGCTTC
AACGGGTTCATCCTATTTTCGGTGTAGCCACTTCCAGAGACAGCAATGGG
AGCACTATGTAACTGCCTCTTGGGTGCCTTACCGTATACCACACTACGTG
ATACGATCATTCCCACTTGTGCGGAGTGCCGGGGGTGGTCAATTTACCCT
GTTAAGGACCGCACTGACCCCACTCCCGTTTTCGGCGACTTATTATTACG
GGGGTCCATAGTAAACAGGACCAAATAATGCTTGTAAAAATAGGTAAATA
TATCGGATTTTGTGTGGACCGTAGGTCCTATTTACTATGGCCCCCCCGTA
GCACTTTCAATTTAAGTGGTTTGTCCCCAAAACGGGACTTGAGTTTTTTC
CCTCAAAAGGGTTGATTTATCTCTCTTGGGACTTCGGAGGGGAAAACTGA
CGATAAAAAAAAAAAAATGCCGACACATGATACAGGAGCACGACCACCGC
TGCGTGATTTTGGGGGGGATGGTACTGAAATCGGTGTCCGACTCAGAATA
CGCAAGAGGAGTCGCGGGGCACGGGAGCGATACGTTGTCCTGTATACTCG
TACTGCTGCGGGGCGCGCGCACACTGGTGGTAGAAATGTTGGTAGCACCA
AAGTTATACCAACCATTCTCTTGGCCAACCATTGTTTTTGGTCGCTATCT
CGAGGTCCGGAAGGGGTTATAGCCCAACCATGGTTGGAATGCCGTGGGTG
TTTTTTCCGCGTTGTTCGTGATATAGTCAATTAAGGCCTTTTGGGATTGG
GTTTTGCAACTTTTTTTTTTCGCTCTTGTTCTTAAAAGGTCGTTTTTTGA
GTGACTTCCTAATGACTTTACTAATAGTAAGTAGAGGTCGTCGAGTGAAG
GAGCCTTGCAAACAAACAACAAAATGGTGCTCCTCTGCCAACGCACGGCG
CCATTCTCCTGTTGACCTTCGACATGTGTCCAGGGGGGAGTTTGCTTATA
TATGCCACAGGATCTGGGGGTGTTTTTTGTTGTTGTTGCAGGCGATCCGG
AAATAGTGAGGCCTCAGTTTTTGGTTTGACCTTCGACGTCGACGGCTGGG
TGTGATGTCATTATTTGTTTCGTAACGAAAAGCTCGCTTCCCTGTGTCAG
GGGGGTCGGAGAGGAAGAGGTGCCGGACCAGCTCCTCCTTCGAGTGGTGG
ACCGAATCATCTCGGACGGAACCGACGCCCCCTCGGAGGGACGATGGGGG
TCGCCGAACTCCCCTTCCAACTCCCCGAATGACAACGACGACAGCCATGG
CGATCACGACGACGGGGGTGGCGGTGGAAGCGGTGGAAGCGGCCGAACCG
ACAACGACCAAGACTGCGACCAAAGCGACAACGGAAATCGTTTCAAAAGC
GGATCTTTTTCCTCTCTCCCCCCTTCCCCCCCCCCCGCGGTGACCGCCGC
CGCCGCCGCCGCTGCCGCTGCCGGCAACTCCAATTCCAGTGAAACGGTCA
ACGATAATGACGCTCCCGCGGGTCCCGTCGGTAGCGGCGGCGGTAGAGGT
AACAGCGGCGGGGCCGGCAGCCAATCAGGAGGCGAGGCCGCCCGCGCCGA
CCAGTGGGGGGAGGTCGACCCCGACGCGGGGGAATGGGAGGACCCGAACA
ATCGACGAGTTGTTGGTGTCGATGTCGATGTCGGTGGTGGTGGTGGTGGC
GGTGGCGGCGGCAGCGGTGGTGGCCGTGGCAGCGGCGGTGGTGGTAGCGG
TGGTGGTGGTAGCGGTGGTGGTGGTGGTGGTAGCGGCGGCGGCGGTAGTG
GAAGCAGGCGGAGGCGGCGAGGGGGGAAGGGTCGGGGACCGTCTCTCGGT
GGGGAGAGGGGCGGCAAAGGGGAGACGGCGGTGGGGGGGGGGGTGGCGCA
GACTACGCAGGCCCAGTCGCAGGTAGCAGCATCCGCGGCGGCGGCCGTGG
CGGCCGCGGCGGCAACGGTTGAGGCGAGCGAAGGGTACGGAGGAGTGCTG
ACGTACGAGTGGCACGGCAAGATGTACCTGGGAGCGGCGCGAGGGATTTC
TGGCATTCTTTTCGTGCTTATGCAAGGTAAGCCCGGGGGCGGGGGTTGGG
GTGGGGGCGGCGGGCGGGGGTGAAGGTGAGGGCGTGGGCAGCTTTTCAAC
GCGTGCGGGGGGGGCAGGGAGAGCCGAAGCGGGTGGGGGGAATTGGGGGA
GTGGGGGGGGGTTGGGGCGACGGGGTAGGTGGGAGGGTTCGTGGGTGGGC
GGGTGGGCGGGTGAGGATTAGCTTGTGGGTGGGTGGGTGGGTAGGTCAGT
GGATGGATGGGTCGGTGGATGGATGGGTAGGGCGAGGGTTTTTTAGCTTG
TGCACCGGAACTGACGGTCGTCAACATCCAGATGGCCAGCCGGGCGCGGC
GACAACCGTAACCGTTGTCGTTCCCTCCACAAGCTGTTGATGAACTCCCG
TCTTGACGGACGCCCCTTTTGATGATAGAAGAAATTAACCCAAGTAGTCT
CGCAGGTTATCTCTGTTGCCCAACCACCCGCCCCCCCCATGAGCACACCC
CCTCCCCCCCCTCCCCCATTTGCGCGAATATCCCGCCGCAGCTCTCCAGA
CGGTGTACGGGGAGTCGCTTTTGGTGGAGGCGCGAGGAGGAGAGGGAAAC
GACAGGGCAGACCTGCCCCCTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14172:4242..7965+

>mRNA_M-pyrifera_M_contig14172.6194.1 ID=mRNA_M-pyrifera_M_contig14172.6194.1|Name=mRNA_M-pyrifera_M_contig14172.6194.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig14172:4242..7965+ (Macrocystis pyrifera P11B4 male)
CTAGCGGAGGACGAGCCGCGATCGCACGACGTTCTCAATGGGCTGGCGGG
TTATCTGAGCGCTCTGCTCTTCGTCAGGTCGAACACGCGAGACTAGCGGA
GGACGAGCCGCGATCGCACGACGTTCTCAATGGGCTGGCGGGTTATCTGA
GCGCTCTGCTCTTCGTCAGGTCGAACACGCGAGACGGCGGTGGTGGTAGC
GGTGGTGGTGGTAGCGGTGGTGGTGGTGGTGGTAGCGGCGGCGGCGGTAG
TGGAAGCAGGCGGAGGCGGCGAGGGGGGAAGGGTCGGGGACCGTCTCTCG
GTGGGGAGAGGGGCGGCAAAGGGGAGACGGCGGTGGGGGGGGGGGTGGCG
CAGACTACGCAGGCCCAGTCGCAGGTAGCAGCATCCGCGGCGGCGGCCGT
GGCGGCCGCGGCGGCAACGGTTGAGGCGAGCGAAGGGTACGGAGGAGTGC
TGACGTACGAGTGGCACGGCAAGATGTACCTGGGAGCGGCGCGAGGGATT
TCTGGCATTCTTTTCGTGCTTATGCAAGCGGCGGTGGTGGTAGCGGTGGT
GGTGGTAGCGGTGGTGGTGGTGGTGGTAGCGGCGGCGGCGGTAGTGGAAG
CAGGCGGAGGCGGCGAGGGGGGAAGGGTCGGGGACCGTCTCTCGGTGGGG
AGAGGGGCGGCAAAGGGGAGACGGCGGTGGGGGGGGGGGTGGCGCAGACT
ACGCAGGCCCAGTCGCAGGTAGCAGCATCCGCGGCGGCGGCCGTGGCGGC
CGCGGCGGCAACGGTTGAGGCGAGCGAAGGGTACGGAGGAGTGCTGACGT
ACGAGTGGCACGGCAAGATGTACCTGGGAGCGGCGCGAGGGATTTCTGGC
ATTCTTTTCGTGCTTATGCAAGCTCTCCAGACGGTGTACGGGGAGTCGCT
TTTGGTGGAGGCGCGAGGAGGAGAGGGAAACGACAGGGCAGACCTGCCCC
CTCAGCTCTCCAGACGGTGTACGGGGAGTCGCTTTTGGTGGAGGCGCGAG
GAGGAGAGGGAAACGACAGGGCAGACCTGCCCCCTCAG
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