mRNA_M-pyrifera_M_contig14168.6192.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14168.6192.1
Unique NamemRNA_M-pyrifera_M_contig14168.6192.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: D8LBI9_ECTSI (Fimbrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI9_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 2.230e-92
Identity = 168/253 (66.40%), Postives = 173/253 (68.38%), Query Frame = 1
Query:    1 QHSGGMAYHSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKD-------------------------------------------------------------IIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHLER 576
            QHSGGMAYHSYSDDERMAFTEHINN LAADPVVG RLPMDPLSE LFT+TSDGLILCKLINLAEFDTIDARAMN+VS+KRPKLSIFQKIENMNLALNAAR IGCVVTNVNAKD                                                             IIDGNSILILGL+WQIIRIQLLSSI               LTSCPELVCLLEEGEELDGLLALQPEAIL+RWFNYHLER
Sbjct:  109 QHSGGMAYHSYSDDERMAFTEHINNCLAADPVVGPRLPMDPLSEDLFTQTSDGLILCKLINLAEFDTIDARAMNVVSEKRPKLSIFQKIENMNLALNAARGIGCVVTNVNAKDGGRIVRVPEGTDDRKRQKTGDLLATLRRTTVEQIPCYGAAEGEKASKCEAHKGDDWVSVRDIIDGNSILILGLVWQIIRIQLLSSIS--------------LTSCPELVCLLEEGEELDGLLALQPEAILLRWFNYHLER 347          
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: A0A6H5JJ18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ18_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 1.200e-80
Identity = 143/175 (81.71%), Postives = 149/175 (85.14%), Query Frame = 1
Query:   52 AFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHLER 576
            AF   I+ + A   VVG RLPMDPLSE LFT+TSDGLILCKLINLAEFDTIDARAMN+VSDKRPKLSIFQKIENMNLALNAAR IGCVVTNVNAKDIIDGNSILILGL+WQIIRIQLLSSI               LTSCPELVCLLEEGEELDGLLALQPEAIL+RWFNYHLER
Sbjct:   84 AFVRKIHKAPAQ--VVGPRLPMDPLSEDLFTQTSDGLILCKLINLAEFDTIDARAMNVVSDKRPKLSIFQKIENMNLALNAARGIGCVVTNVNAKDIIDGNSILILGLVWQIIRIQLLSSIS--------------LTSCPELVCLLEEGEELDGLLALQPEAILLRWFNYHLER 242          
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: A0A835YV37_9STRA (Actin bundling protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV37_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.200e-74
Identity = 131/185 (70.81%), Postives = 148/185 (80.00%), Query Frame = 1
Query:   22 YHSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHLER 576
            +HSYS++ERMAFTEHINN L  DP VG+RLPM   SE LF+E SDGL+LCKLIN AE+DTID RA+N+ +  +P L+IF K+ENMNLALNAA+SIGCVVTNVNAKDIIDGN ILILGLIWQIIRIQLL+SI               LT+CPELV LL E E LD LLALQPEAIL+RWFNYHLER
Sbjct:  113 HHSYSNEERMAFTEHINNCLQRDPHVGSRLPMPLQSEKLFSEVSDGLLLCKLINHAEYDTIDERALNVPTPTKP-LNIFHKVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLASIS--------------LTACPELVALLNEDETLDDLLALQPEAILLRWFNYHLER 282          
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: A0A836CF36_9STRA (Actin binding protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF36_9STRA)

HSP 1 Score: 237 bits (605), Expect = 7.750e-72
Identity = 127/184 (69.02%), Postives = 145/184 (78.80%), Query Frame = 1
Query:   22 YHSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHLE 573
            +HSYSD+ER+AFTEHINN L  D  VG RLPM   SE LF+E +DGL+LCKLIN AEFDTID RA+N+ +  +P L++FQ +ENMNLALNAA+SIGCVVTNVNAKDIIDGN ILILGLIWQIIRIQLLSSI               LT+CPELV LL E E LD LLALQPEAIL+RWFN+HL+
Sbjct:  109 HHSYSDEERIAFTEHINNCLQRDKDVGPRLPMQTESEQLFSEVADGLLLCKLINHAEFDTIDERALNLPTAAKP-LNVFQMVENMNLALNAAKSIGCVVTNVNAKDIIDGNPILILGLIWQIIRIQLLSSIS--------------LTACPELVALLNEDEALDDLLALQPEAILLRWFNHHLK 277          
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: A0A418E3V9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E3V9_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.140e-49
Identity = 93/189 (49.21%), Postives = 127/189 (67.20%), Query Frame = 1
Query:    4 HSGGMAYHSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHL 570
            HS     HSYS++E+ AF EHIN+ L+ DP +   LPMD  S ALFT  +DG++LCKLIN A  DTID RA+NI    +PKL++++K EN+NL +NAA+SIGC + N+   D+++G +IL+LGL+WQ+I+IQL S+I    H              PELV LL +GE L+  + L P+ IL+RW NYHL
Sbjct:   54 HSATGGVHSYSEEEKAAFAEHINHCLSGDPQL-PYLPMDTSSNALFTSVTDGILLCKLINQAVPDTIDFRAVNI----KPKLNLYEKTENLNLVINAAKSIGCSIVNIGPSDLLEGKAILVLGLVWQVIKIQLTSTINLKNH--------------PELVRLLLDGESLEDFMKLPPDQILLRWVNYHL 223          
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: A0A7S2S2Z4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2Z4_9STRA)

HSP 1 Score: 176 bits (445), Expect = 8.110e-48
Identity = 98/184 (53.26%), Postives = 122/184 (66.30%), Query Frame = 1
Query:   25 HSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHLER 576
            HS S++ER AF+EHIN  L  DP +  RLPMDP SE LF++ +DG+I  KL+NL E  T+D RA+N+ S    KL+ FQ IEN NLA+NAA+SIGC VTN+ A D+++G   LILGL WQII+  LL+SI       I  H        PEL  LLEE E L+ L  L PE IL+RW N+HLER
Sbjct:  131 HSISEEERFAFSEHINRVLGPDPFLSQRLPMDPNSEQLFSQCADGIIFAKLVNLVEMGTVDERALNLKS----KLTKFQVIENCNLAINAAKSIGCRVTNIGATDLMEGRPHLILGLCWQIIKAHLLNSI------SIKDH--------PELFRLLEEDETLESLQKLPPEQILLRWINFHLER 296          
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: A0A485KTW7_9STRA (Aste57867_11777 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTW7_9STRA)

HSP 1 Score: 173 bits (439), Expect = 4.780e-47
Identity = 93/189 (49.21%), Postives = 123/189 (65.08%), Query Frame = 1
Query:    4 HSGGMAYHSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHL 570
            HS     HSYS++E+ AF EHIN+ L  DP +   LPMD   + LFT  +DG++LCKLIN A  DTID RA+NI    + KL++++K EN+NL +NAA+SIGC V N+   D+++G  IL+LGL+WQII+IQL S+I    H              PELV LL +GE L+  + L PE IL+RW NYHL
Sbjct:  247 HSATGGVHSYSEEEKSAFAEHINHCLTGDPQLPL-LPMDTARDGLFTSVTDGILLCKLINQAVPDTIDMRAVNI----KAKLNLYEKTENLNLVINAAKSIGCSVVNIGPSDLLEGKPILVLGLVWQIIKIQLTSTINLKNH--------------PELVRLLLDGESLEDFMRLPPEQILLRWVNYHL 416          
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: A0A1V9YBE8_9STRA (Fimbrin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBE8_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.310e-46
Identity = 93/188 (49.47%), Postives = 125/188 (66.49%), Query Frame = 1
Query:    7 SGGMAYHSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHL 570
            +GG+  HSYS++E+ AF EHINN LA D  +G  LP++P    LF   +DG++LCKLINLA  DTID RA+NI    +PKL++++  EN NL +NAA+SIGC + N+   D+++G  IL+LGL+WQIIRIQL ++I    H              PELV LL +GE L+  + L PE IL+RW NYHL
Sbjct:  255 TGGV--HSYSEEEKSAFAEHINNCLAGDAHLGY-LPINPAGHDLFASVADGILLCKLINLAVPDTIDMRAVNI----KPKLNVYEMTENHNLCINAAKSIGCSIVNIGPSDLLEGKPILVLGLVWQIIRIQLTATINLKNH--------------PELVRLLLDGETLEDFMKLPPEQILLRWVNYHL 421          
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: UPI000644AA72 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644AA72)

HSP 1 Score: 168 bits (425), Expect = 3.670e-46
Identity = 91/190 (47.89%), Postives = 122/190 (64.21%), Query Frame = 1
Query:    7 SGGMAYHSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHLER 576
            +G    HS+S++E+++F EH+N+ L  D V  ARLP+DP +  LFT   DG++LCKLIN +  DTID RA+N     +  ++ +Q+ EN N+ +N+A++IGC V N+ A DI+ G   LILGLIWQ+IRI LLS I    H              PEL  LLE GEE+  LL L  EAIL+RWFNYHL+R
Sbjct:   12 AGASGIHSFSEEEKVSFAEHMNSVLGGDAVADARLPIDPNTMDLFTRVQDGVLLCKLINASVPDTIDERALNT----KVGMNRYQQTENGNIVVNSAKAIGCSVVNIGASDIMAGTEHLILGLIWQVIRIGLLSQITLANH--------------PELFRLLEPGEEISDLLKLPAEAILLRWFNYHLKR 183          
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Match: A0A6G0WSU6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSU6_9STRA)

HSP 1 Score: 170 bits (431), Expect = 6.320e-46
Identity = 90/188 (47.87%), Postives = 127/188 (67.55%), Query Frame = 1
Query:    7 SGGMAYHSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLILCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCVVTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLTSCPELVCLLEEGEELDGLLALQPEAILVRWFNYHL 570
            +GG+  HSYS++E+ AF EHIN+ L+ DP +   LPMD  S+ALF   +DG++LCKLIN A  +TID RA+NI    + KL++++K EN+NL +NAA+SIGC + N+   D+++G  IL+LGL+WQ+I+IQL S+I    H              PELV LL +GE L+  + L P+ IL+RW NYHL
Sbjct:  250 TGGV--HSYSEEEKAAFAEHINHCLSGDPQL-PYLPMDTASDALFASVTDGILLCKLINQAVPETIDMRAVNI----KAKLNLYEKTENLNLVINAAKSIGCSIVNIGTSDLLEGKPILVLGLVWQLIKIQLTSTINLKNH--------------PELVRLLFDGESLEDFMQLPPDQILLRWVNYHL 416          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14168.6192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI9_ECTSI2.230e-9266.40Fimbrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JJ18_9PHAE1.200e-8081.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV37_9STRA1.200e-7470.81Actin bundling protein n=1 Tax=Tribonema minus Tax... [more]
A0A836CF36_9STRA7.750e-7269.02Actin binding protein (Fragment) n=1 Tax=Tribonema... [more]
A0A418E3V9_9STRA2.140e-4949.21Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S2S2Z4_9STRA8.110e-4853.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485KTW7_9STRA4.780e-4749.21Aste57867_11777 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YBE8_9STRA1.310e-4649.47Fimbrin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]
UPI000644AA723.670e-4647.89hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6G0WSU6_9STRA6.320e-4647.87Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14168contigM-pyrifera_M_contig14168:1262..8106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.3
Seed ortholog evalue4.2e-74
Seed eggNOG ortholog2880.D8LBI9
KEGG koko:K17275,ko:K17276
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin filament network formation
EggNOG OGsCOG5069@1,KOG0046@2759
Ec32 ortholog descriptionFimbrin
Ec32 orthologEc-27_003810.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Exons5
Model size576
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14168.6192.1prot_M-pyrifera_M_contig14168.6192.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14168 1262..8091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.1357324-CDS-M-pyrifera_M_contig14168:1261..13791622815837.1357324-CDS-M-pyrifera_M_contig14168:1261..1379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 1262..1379 -
1692277598.3657315-CDS-M-pyrifera_M_contig14168:1261..13791692277598.3657315-CDS-M-pyrifera_M_contig14168:1261..1379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 1262..1379 -
1622815837.1464736-CDS-M-pyrifera_M_contig14168:2875..29971622815837.1464736-CDS-M-pyrifera_M_contig14168:2875..2997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 2876..2997 -
1692277598.3785844-CDS-M-pyrifera_M_contig14168:2875..29971692277598.3785844-CDS-M-pyrifera_M_contig14168:2875..2997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 2876..2997 -
1622815837.158115-CDS-M-pyrifera_M_contig14168:3978..41021622815837.158115-CDS-M-pyrifera_M_contig14168:3978..4102Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 3979..4102 -
1692277598.3923652-CDS-M-pyrifera_M_contig14168:3978..41021692277598.3923652-CDS-M-pyrifera_M_contig14168:3978..4102Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 3979..4102 -
1622815837.171159-CDS-M-pyrifera_M_contig14168:5068..51871622815837.171159-CDS-M-pyrifera_M_contig14168:5068..5187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 5069..5187 -
1692277598.4022646-CDS-M-pyrifera_M_contig14168:5068..51871692277598.4022646-CDS-M-pyrifera_M_contig14168:5068..5187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 5069..5187 -
1622815837.1834676-CDS-M-pyrifera_M_contig14168:8013..80911622815837.1834676-CDS-M-pyrifera_M_contig14168:8013..8091Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 8014..8091 -
1692277598.411661-CDS-M-pyrifera_M_contig14168:8013..80911692277598.411661-CDS-M-pyrifera_M_contig14168:8013..8091Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14168 8014..8091 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.1938422-UTR-M-pyrifera_M_contig14168:8091..81061622815837.1938422-UTR-M-pyrifera_M_contig14168:8091..8106Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14168 8092..8106 -
1692277598.4206371-UTR-M-pyrifera_M_contig14168:8091..81061692277598.4206371-UTR-M-pyrifera_M_contig14168:8091..8106Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14168 8092..8106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14168.6192.1

>prot_M-pyrifera_M_contig14168.6192.1 ID=prot_M-pyrifera_M_contig14168.6192.1|Name=mRNA_M-pyrifera_M_contig14168.6192.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
MAYHSYSDDERMAFTEHINNSLAADPVVGARLPMDPLSEALFTETSDGLI
LCKLINLAEFDTIDARAMNIVSDKRPKLSIFQKIENMNLALNAARSIGCV
VTNVNAKDIIDGNSILILGLIWQIIRIQLLSSIRQVYHGDIPAHTNYFLT
SCPELVCLLEEGEELDGLLALQPEAILVRWFNYHLER
back to top

mRNA from alignment at M-pyrifera_M_contig14168:1262..8106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14168.6192.1 ID=mRNA_M-pyrifera_M_contig14168.6192.1|Name=mRNA_M-pyrifera_M_contig14168.6192.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6845bp|location=Sequence derived from alignment at M-pyrifera_M_contig14168:1262..8106- (Macrocystis pyrifera P11B4 male)
CAGCACTCCGGAGGCATGGCGTACCATTCGTACTCGGACGATGAGCGGAT GGCTTTCACGGAGCACATCAACAACAGTCTCGCGGCGGACCCGGTGAGAA AGAGAAGGCTTGTCGTAAACTATACCATACCTGGTACTACAAGCAGTATA CTTGTTTTTTTTGCTATTTTTTTCATCCCACTTGTTGTTGTTGTCGCCTT CTTTTCTCCTGCTCCCTCCCTAGTCGTAGCTCAGGCCGCGGGTCACATAT TACGGGGGTCCGTAGTTAATAGGACCTATGGTATACATAAAAATATATAT ATTTACCTCTTTTTAATAACAATATTTGGTCCTATTAACTATGGACCCCC GTAATAGTAGAAGTAGACTCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCGCTCCCACCCCCCCCCCCCCCCCCCCCGACCGGCGCGCCCCCTCCG GCCCTTCCCGCCCCTCCCGCCACCCCCCCACGCCACCGCNNNNNNNNNNA ATTAATTTTTTTTCTTTTTTTTTATTATATTATTTTTGTCTTTTTTTTTT GGGCCCCCGTAATAATAAAGGCACCCCCCCCCCCCCCCCCCCCCCCCTCG CTACCTGGTCGGTGAAAACCCGACATGCTCCGTCCCGGCATTGTAGGGAT GCGAGGGCGAGGGTCTATGGTCATACAACTACGGCCATGCATGAGATCGA GTACGTCTCTCCTATCGAGTACACCCCTCTCGCTACAAGCATGGCACGTA CGTACGTGCCTTGCTGTTTTATCACGATAAAGGTTGAACGCTTTCTTCCC TCGTCGACTCGCGACTAGTTGCAGCTGACAACTGGTGCTACTACTGTACC GTAGGGGGGAGTACAGCACGGTACGACCAGTAGTCTCAAACCTTCACGTA CCACTCTCACCTCTTGCCGGGAATAGATTAATATGATAGTCACTCGATGC ATTGCGTTGTGGCGATGAGTTAATGCGAGAAGAACAACAACAACTCGTTT GGACTGTAATCTGAACACGAAAGGCGCATTATATTCCGGGACAGAATCAT GCCACTTTTGCGACGCTTGAGAACTTGACATGGCCGGTCTTCCACCGCTC CCACCACTGGCATGTGGAATTCAGACGGGGTTTTATAATGTGGCTGGCAA CGGTTTTTGTTTTTTTGTAACTCGCCACGAACATGTGGGATTCGCACTGG GTTGTAATATGGCTGGTGAATATTTTTTGTTTTTTGTACTCACCGAAATG TGGGATTCAGACCGGGTTGTCTTATGGCTTGTATTTTTGTGTGTGTGGGG TACTCGATAGGAGAGATGTACTCGATATCATGCATGGCCGTAGTCGTATG GCCATATATATATATATATTTTGTGTGTGTGGGGGGGGAGGGGGGGTGGG GTAGATAGAGGTAGAGGAGTTATACAACCAAAACAATGCGCACGTCGGAC AGATCAGATAGATAATATATTCCCTCTTCATGATCTAGATCATTCACGGT AGATGTATTCTTCATCCGTACCGATCTGCAGTAGGTCGTGTTGCCCGATG GGAGCTGTGTAATCTGGATGGTCTAGATAATCACTTAGGGTTTCATCGAT CGGATCTGTACTACAGCAGATCATAGCGGCGGGTTGCGGTCTGCTGTAGA TGATCCACCTCATCTATGCGATCTATCTCGTCTGTTTGGTGTGAGAAACT GAAGTTCTCGGAGGGTTTTATTAGGCTAAAGTTGTGTCTCAGAAAAGGAC ATTCTGCTTCGTGCGTGTTTCGAGGTGTGTTATTACGGGGGGCCATAGTA AATAGGACCAAATATTGTGAGTAAAAATAGGGAAATGTATAGGTTTTTGT GGGTACCGTAGGTCCTATTTACTAGGGTCCCCCCCCCGTAATATGACACG AGTACGCACATGTGTGTGTACCTTGTGAGAGTGTGTTGTTGTCTTGGTCA CCCTTTGATCCACCCGGGTGTGATGTGGATTTTGCTGTCGCTGAATTCAA CGCCTTCTCCGACACGCGCATGCACCCACTGTATTTATGTGATGTTCGTA TTATAAAATGATGACGAAAGAAGCACAACAACAGCCGTCGACGTGAAGTG AACTGACTGCGGTGGAGCTTACCACTTAATTCGATATTGGATTGGTCTGA TTGGCTCAGGGTCAGGGTTAAGGGTTGCTCTGATTGGCTTACGGCTAGAG TTAGGGTTGATCTGATTGGCTCAGGGTCAGGGTTAGGGATGCTCTGCTTG GCTTGCGGTTAAAGTTAGGGTTGATTTTATTGGCTTAGGGGTGGGGTTAA GGTTGCTCTGATCGACTTGGGGTTAGGATTAGGGTTGATCTGATTGGCTC AGGGTTGGGGTTAGGGCTGCTCTGATTGGCTTAGGGTTAGGGCTGCTCTG ATTGGCTTAGGGTTAGGGCTAGGGTTAGTTCTATTCGTCTCGTACACGGT GAGTGTCAAATCATTTTCAGTGGTAAGCAACCGTCACTGACTTGAGGGTT TATAACTTTTCCGAATTTGCCCGCAAGAAAAAACCCAGCAAAACCTCCCC ACGTCACGATCCAGGGTATCAACAGGACACATATTGTACAAGGGAGAATA TCCAATGCATGCCACCATACACGTTGAAACCAGTATTCCCGTGCTCGAAT TTTTGTTGATTTGTGTTGGAAAAGAAGCCTGACGTCGAAACCGCCGTCGC AAGTTGAGTTTTCACGTGTGGAATTTTTTTTTCCGTACCTGGAATATACC AGGTACTACATTTAGTTCCAACTAGTGTCGTCCCTCACAAAATGAATGCA CTTTCCAAGTAACGGGGGTCGATTTTTGTGTGTGTTTTCTTTGTGTGTTT TTTGTGTGTTTTGTCCCGCTTTTTTTGTGTTTTTTGTGTATGTATGTGTG TGTGTGTTTTTTTTTTCAGGTGGTGGGGGCGCGCTTGCCCATGGACCCGC TTTCGGAGGCGCTGTTCACGGAAACCTCCGACGGCCTCATCTTGTGCAAG CTAATCAACCTCGCCGAGTTCGACACCATCGACGCGAGGTATGGATTAAT AGGTGCCGCATGCGTTAGTGGTTTGATGGCTTGGTCGTGTGCTGGTGTGT TTGGTGTGTAATGCATTGGTGGTTTTGGGCTTTTTGGTGTCCTAGTGATG TAGTGCTCTGGGCGTGGATTGTTCGCGGGGGATCAAGGAGGTGGCGTATC GTGGGACCGGGTTTAGGCTCTGGTGGTGATGATAGTGTCGTTCTCGTTGT TGGTTTGGTTGTTGTCGATTTTGCTGTGGTCGTTGCAGTTGCTGTTGTTG TTGCTTTTGCTGATGCGGTTGCTGCTATTGTTGTAGGGCTCTGTGCTTGT ATGTATCGTACCAGGTATCTGAATGGCGTCTGGCTCTTTCTTCCTCATTG TGTAATTTTCGAATGTCGTTTTCGGCTGTAGAACCAAAGCAAACATGGTC ATGTCCGTTTTGTCGGGAGGAGCCTTTCCTCTGCGTGACCGCGTGGATTG TTTTCTCGTAGGAATGATCGTATCAGGTACCAGGTAGGTTTGTGGTAAGG CATCCACGAGGCAGTTATGTAGTACCCCCATTGCTGTCTCTGGAAGTGGC CACACCGGAAAGTAAATCGACTCATTGGCGCTGTCACGCTTGCGCAAGTC CGCCTCACAAGCGGCTCTTAGTAGAGGATTCAGCTCACCCTTCATGCGAC TCGCCGAACACCTCACGGCGCTTCCGCGCTTGGTGCAAGCATTGTCTGCC TGGCGGGTGAAAACCCGACGTGCTCCGTCCCGGCGTTGTAGGGAAGCGAA TGTCTATGGTCAAACGACTACGGCCATGCGTGATATCGAGTACCCCCCCC CCCACCCTGCCCCCGTGCTGCTCCGTCTCGAAAGGGATGCGCGGTCAATG GTCAAATGACTAAGGTAAGCAACAAATGAGTACGCCCCCCCCCTGCCCCC GTCTCCTTCCTCTTTGTCTGGGTTCGTCTTTGCTTGTGATTGTGTGACAC GCAGGGCCATGAACATCGTTTCGGACAAGAGACCGAAGCTGTCGATCTTC CAAAAGATTGAAAACATGAACCTCGCCCTCAACGCTGCGCGATCAATTGG ATGCGTCGTCACCAACGTTAACGCCAAGGTATACACGCCGCCTAGCCCAG CCTAGCCTAGCCTAGCCTAGCCTATTAGACGGGGCCGAGCCAGGCCAGGG GGAGGGGGGGGGAGTGTACTCTCATGTCATGCATGGCCGTAATCGTACGA CCATAGACCCTCGCATCGCTACATACAATGCCGGGACCGAGCACGTCGGG TTTTCACCGACCAGGCAGACAGTGCTTGCACCAATCGCGAAGCGCCGTGA GGTGTTGAGCAAGTCGCGTGGGAGGTGGGAGTTGCAAGTATCCCCCCGTC GAGGGCGGGAGGGGGGGGGCGGGTGCAGGCTGATGCTGTTTGTGATGATT GTGGTGTGTGTGATGGCCGTGATGGTTGTGATGTTTGTGATGCTTGCATA CAAATCGAAGTGTAGTGTTTATGTGGTGTGTGGTGTTTGGTATGTAGCGT AGATGTTGGATGTTTTTAGAACGTGTTTGTTATGTTGGGGAGTTGTGGGA AATTTTTGGATGGGTGGGATAAGTGCGATGTGTGGGACATTAGAGATATG TGGGGGTATTTAGGATGGTTGGGATGGTTGGGATGCTCGCGATATTTGTG GTCGTGTGAAGTTTCGCGGTTTTGTGTTTTTTCGTTTTGTGGTGCTTTGT GATTTTTTTGTTCGCGTTTTGTGGTGTTTGTGATGCCGTTGACGACGATA TCAACACATCAGCGCAAGCCATTTCGGCTGCTGCTGCGCAGTCATGGCAG TTGCTCCTCCTCGCGTGAAGGGAGGGGGGGGAGCTAGCACAGTGGCAGGG CAATTCCTAGTGAGACTGCTATGGAGCTCGAGTCTTTCCTTGTTTCGCTG CGCTTTTCAACATTCCTACATACCTTACAATACCTTTTCTTTTGTACACA CAATCGATGAAACTCGATCCTTTTTCTGGCTCGTTGCGTGCACTGTCCGT TTTTTTTTGTGAATGGTGATTGGTGGACGTCTGTGATTGGTGGAACGATT GCGCCGCAGGACATCATCGACGGCAATTCCATCCTCATCCTCGGGCTGAT CTGGCAAATCATCCGGATACAGCTGCTATCCTCCATCAGGCAAGTATACC ATGGGGATATACCGGCACATACCAATTACTTGTACCTTTCGGGATGAGAA AATATAAGGACGTAACAATCGTTGACATCAATGGGGTGTTCGGGAATGAT TTGGTTCACACCGAGTTATTTGGTCTAGGTTTCTCGTGGTCTGTTTTTAT TTAATACATGGTGTGTAAAAATGAACCGCTTTCAAAATCTTCCTCTCTCA AGGTTGGGGCATTTTTTTTTTTGGTCAGAACGTAACTTTGAACCTACCCT AGTCATTTATTTCTTGGGTCGAGTTGTAACGTTTATTGTTAATAGTAGGA AGGTCCATGGCTCGGGGTCACTTTTATGCAGGAAACAGACCGCAAGGCAC TTGCCCCAATTGGTTCCAACCAAATTCTTCGGGAACACCGTATACCGAGT GGTCCTCATGTTTCCTTCCAGGATGGCGTGTGTCTTGCTTGACGGGCTAT CTCAGCGGGGGATGTGTCGGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCGCCCCCCCGCGCGCGGGG CGGGGGGGCGGCGCTGGGTCGCGCCGCCGGGGCGCACAACAAGCNNNNNN NNNNCCGGGTGGTCCCCTGTGTTCCTTCCGGGGTGGCGGGTGTTTTGCTT GCCGGGCTATCTCCGGGGGGGGTGTGTGGGTGCCCCCCCCCCCCCCACCC CGCGCCCCCGCACGCACGCGCGCCTCCCCGTTTGGACGATGCTGCGACGT AGGCGTGGTCGTTGGTCGTTCGTTGGTCTCCATTGCGCAAGCAAAAACTA CGTATTGTGCAGCGGTTAGTGAAAGGATGAATGGTTGCGTTATCAAATGG TTTGGAAGGAACCATGGTAGGTGTGGGGTATGTTGGTTTTGTTTCTGTTT GGAGTGGGGTTTTTTTGTAGGGGTTTTTGTAACGGTTTTTTTTTTTTTTT TTCGGCTGAGAAAGTTTATTTCAGGGTCCGGACGGTGGTTTTGGGTGGGT AGATGGGGGGCCCGGCCGTGATAGTGGAAAGCTTAAAACCCGTTTTCGCT GGTGCACTGCTGCGCATGTATGCATGTTATCTGTTTCGCATCCCAATTTA TTTGGCCCCCACGATGGGAGAGTGCGGTCCTAAAGGAGTCAACCTTTTTC AGTCCTGCAGTCCCCGTTTAGGGGGGCAAACTACCTACCAGGTATCACTC TGTCTCTTAACAATAATGACCGTTTGTTCACTATTATCTAATCAAAATTA CATTCAGGGACAAGAGTGGTACGGTTGAAGAGGTTTGTCCCCATCACGGG ACTGCAGGCTTGGAAAGGGGTTCAAGCTTGGTTCTCTGTTTGCTTTCGGC TTCTTTTTTTTTTTGCCCTGCGTTTTTGTTCTTGTGTTTGTTCTGGCTGT TTGCTCTTGGTTGTTATTGTTCTTGTTTCCTTGTTGGTTTGGTTTTTGTT GATTTGTGTTGTCATTTTGTTGGGGGGTTTTTTCGCTTCATTTTTTGTCT TGTTTTTCACCCCCGGCACGGCGGCAGCTTGACGTCCTGTCCGGAGCTGG TCTGCCTCCTGGAGGAAGGAGAGGAGCTTGACGGGCTGCTGGCGCTGCAG CCGGAGGCCATCTTGGTTCGCTGGTTCAACTACCACCTCGAGAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig14168:1262..8106-

>mRNA_M-pyrifera_M_contig14168.6192.1 ID=mRNA_M-pyrifera_M_contig14168.6192.1|Name=mRNA_M-pyrifera_M_contig14168.6192.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig14168:1262..8106- (Macrocystis pyrifera P11B4 male)
ATGGCGTACCATTCGTACTCGGACGATGAGCGGATGGCTTTCACGGAGCA
CATCAACAACAGTCTCGCGGCGGACCCGATGGCGTACCATTCGTACTCGG
ACGATGAGCGGATGGCTTTCACGGAGCACATCAACAACAGTCTCGCGGCG
GACCCGGTGGTGGGGGCGCGCTTGCCCATGGACCCGCTTTCGGAGGCGCT
GTTCACGGAAACCTCCGACGGCCTCATCTTGTGCAAGCTAATCAACCTCG
CCGAGTTCGACACCATCGACGCGAGGTGGTGGGGGCGCGCTTGCCCATGG
ACCCGCTTTCGGAGGCGCTGTTCACGGAAACCTCCGACGGCCTCATCTTG
TGCAAGCTAATCAACCTCGCCGAGTTCGACACCATCGACGCGAGGGCCAT
GAACATCGTTTCGGACAAGAGACCGAAGCTGTCGATCTTCCAAAAGATTG
AAAACATGAACCTCGCCCTCAACGCTGCGCGATCAATTGGATGCGTCGTC
ACCAACGTTAACGCCAAGGGCCATGAACATCGTTTCGGACAAGAGACCGA
AGCTGTCGATCTTCCAAAAGATTGAAAACATGAACCTCGCCCTCAACGCT
GCGCGATCAATTGGATGCGTCGTCACCAACGTTAACGCCAAGGACATCAT
CGACGGCAATTCCATCCTCATCCTCGGGCTGATCTGGCAAATCATCCGGA
TACAGCTGCTATCCTCCATCAGGCAAGTATACCATGGGGATATACCGGCA
CATACCAATTACTTGACATCATCGACGGCAATTCCATCCTCATCCTCGGG
CTGATCTGGCAAATCATCCGGATACAGCTGCTATCCTCCATCAGGCAAGT
ATACCATGGGGATATACCGGCACATACCAATTACTTCTTGACGTCCTGTC
CGGAGCTGGTCTGCCTCCTGGAGGAAGGAGAGGAGCTTGACGGGCTGCTG
GCGCTGCAGCCGGAGGCCATCTTGGTTCGCTGGTTCAACTACCACCTCGA
GAGGCTTGACGTCCTGTCCGGAGCTGGTCTGCCTCCTGGAGGAAGGAGAG
GAGCTTGACGGGCTGCTGGCGCTGCAGCCGGAGGCCATCTTGGTTCGCTG
GTTCAACTACCACCTCGAGAGG
back to top