mRNA_M-pyrifera_M_contig14145.6188.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14145.6188.1
Unique NamemRNA_M-pyrifera_M_contig14145.6188.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14145.6188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14145contigM-pyrifera_M_contig14145:4324..4996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size674
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.7001667-CDS-M-pyrifera_M_contig14145:4323..46771622815836.7001667-CDS-M-pyrifera_M_contig14145:4323..4677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14145 4324..4677 +
1692277598.0538864-CDS-M-pyrifera_M_contig14145:4323..46771692277598.0538864-CDS-M-pyrifera_M_contig14145:4323..4677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14145 4324..4677 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.7112691-UTR-M-pyrifera_M_contig14145:4677..49961622815836.7112691-UTR-M-pyrifera_M_contig14145:4677..4996Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14145 4678..4996 +
1692277598.0640652-UTR-M-pyrifera_M_contig14145:4677..49961692277598.0640652-UTR-M-pyrifera_M_contig14145:4677..4996Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14145 4678..4996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14145.6188.1prot_M-pyrifera_M_contig14145.6188.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14145 4324..4677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14145.6188.1

>prot_M-pyrifera_M_contig14145.6188.1 ID=prot_M-pyrifera_M_contig14145.6188.1|Name=mRNA_M-pyrifera_M_contig14145.6188.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
ERVCHQVGVECVDRRVEHLFYVGGFPFSTEPKRRAVWCTAYGRFPREIRS
SNSSGGANIEQLRAVCPPVLDAFVECAMLVSMRERKEAFIQRGETNGRPP
ACVVQVYLPPFSRLLCT*
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mRNA from alignment at M-pyrifera_M_contig14145:4324..4996+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14145.6188.1 ID=mRNA_M-pyrifera_M_contig14145.6188.1|Name=mRNA_M-pyrifera_M_contig14145.6188.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=673bp|location=Sequence derived from alignment at M-pyrifera_M_contig14145:4324..4996+ (Macrocystis pyrifera P11B4 male)
GAGCGTGTGTGTCACCAGGTAGGTGTGGAGTGTGTTGATCGCCGCGTCGA
ACACCTCTTTTATGTGGGTGGTTTTCCTTTCAGCACGGAGCCAAAAAGAA
GGGCAGTGTGGTGTACGGCGTATGGGCGATTCCCGCGTGAGATACGCAGC
AGCAACAGCAGCGGCGGTGCTAATATTGAGCAGCTGCGAGCGGTGTGCCC
GCCTGTTCTGGACGCTTTTGTCGAGTGCGCGATGTTGGTGTCGATGAGAG
AAAGAAAAGAGGCGTTCATCCAGAGAGGGGAAACGAACGGCAGGCCCCCG
GCGTGCGTTGTGCAAGTTTACCTCCCCCCATTCTCCCGCCTTTTGTGTAC
GTAGTTGTTTGCGTGTTGCCCTTCGTGTGAGGTTTTACACAAGGAGGGCC
GTTCTGACGTGCGTTCGGCTTTTGGACGAAATGCAACAGACGAAATCGAA
GTTTTTATGTGTTTGTTTGACCCGTTGAGCTTGTGAGGCGAGAGGAATGG
GCCCATCGGTGCCTTCATAAACGGTTGGTGCTCGCGTTCGAGATGTGAGC
TATAATATGTAGGCACATGCACATTTTTTTTCCTTGTTTCGCGTTCTAGC
GTTCATAGATCGTGGCCGGTATTGATGCAGGCGAGGGTTAATGACCGAGG
CACTGGTCCCCTGCATGAATATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14145:4324..4996+

>mRNA_M-pyrifera_M_contig14145.6188.1 ID=mRNA_M-pyrifera_M_contig14145.6188.1|Name=mRNA_M-pyrifera_M_contig14145.6188.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig14145:4324..4996+ (Macrocystis pyrifera P11B4 male)
GAGCGTGTGTGTCACCAGGTAGGTGTGGAGTGTGTTGATCGCCGCGTCGA
ACACCTCTTTTATGTGGGTGGTTTTCCTTTCAGCACGGAGCCAAAAAGAA
GGGCAGTGTGGTGTACGGCGTATGGGCGATTCCCGCGTGAGATACGCAGC
AGCAACAGCAGCGGCGGTGCTAATATTGAGCAGCTGCGAGCGGTGTGCCC
GCCTGTTCTGGACGCTTTTGTCGAGTGCGCGATGTTGGTGTCGATGAGAG
AAAGAAAAGAGGCGTTCATCCAGAGAGGGGAAACGAACGGCAGGCCCCCG
GCGTGCGTTGTGCAAGTTTACCTCCCCCCATTCTCCCGCCTTTTGTGTAC
GTAGGAGCGTGTGTGTCACCAGGTAGGTGTGGAGTGTGTTGATCGCCGCG
TCGAACACCTCTTTTATGTGGGTGGTTTTCCTTTCAGCACGGAGCCAAAA
AGAAGGGCAGTGTGGTGTACGGCGTATGGGCGATTCCCGCGTGAGATACG
CAGCAGCAACAGCAGCGGCGGTGCTAATATTGAGCAGCTGCGAGCGGTGT
GCCCGCCTGTTCTGGACGCTTTTGTCGAGTGCGCGATGTTGGTGTCGATG
AGAGAAAGAAAAGAGGCGTTCATCCAGAGAGGGGAAACGAACGGCAGGCC
CCCGGCGTGCGTTGTGCAAGTTTACCTCCCCCCATTCTCCCGCCTTTTGT
GTACGTAG
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