mRNA_M-pyrifera_M_contig14133.6184.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14133.6184.1
Unique NamemRNA_M-pyrifera_M_contig14133.6184.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: D7G0P1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P1_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 1.610e-84
Identity = 124/159 (77.99%), Postives = 137/159 (86.16%), Query Frame = 1
Query:    1 RMFSGCMDSQTSADVQDVSKFGLPNADGAGGACTNAMLLTLKDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGINYIGQQGELAGCHNDVSMMKAYIATHGYAEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            RMFSGCMDSQTSADV+DVSKFGLP+ADGAGGACTNAMLLTL D    +WL LLKGMQ+ L TK+FSQVPQLSTSR+ID+ND F L N +GGG T+ LLIGINYIGQQGELAGCHNDV MMK YI THGY+ D A+CK+LMDD VHG PDHKGVI+G RW
Sbjct:   64 RMFSGCMDSQTSADVKDVSKFGLPDADGAGGACTNAMLLTLSDEHSDSWLGLLKGMQSVLKTKRFSQVPQLSTSREIDVNDKFSLRNTAGGGSTKCLLIGINYIGQQGELAGCHNDVDMMKKYITTHGYSMDPADCKVLMDDNVHGMPDHKGVIEGFRW 222          
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: D8LJ59_ECTSI (Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ59_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.570e-58
Identity = 93/159 (58.49%), Postives = 116/159 (72.96%), Query Frame = 1
Query:    1 RMFSGCMDSQTSADVQDVSKFGLPNADGAGGACTNAMLLTLKDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGINYIGQQGELAGCHNDVSMMKAYIATHGYAEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            RMFSGC D QTSADV DV+KFGLP+A GAGGACTNA+L  +KDS   +W+SLLKGM++TL  KKF Q+PQL+TS+++DI+  F L      G  ++LLIGINY G +GEL GCHNDV  M+ YI THGY  D AN KI+ DDG H  P  + ++  I+W
Sbjct:   73 RMFSGCEDVQTSADVHDVAKFGLPDATGAGGACTNAVLANVKDSKPDSWMSLLKGMRSTLKEKKFKQIPQLATSKKMDIHSPFDLSGGDESGNHKALLIGINYTGGKGELKGCHNDVKQMREYITTHGYPADGANLKIVSDDGEHEEPSKENILKAIKW 231          
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: A0A7S0YNU0_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YNU0_9CRYP)

HSP 1 Score: 181 bits (458), Expect = 9.890e-53
Identity = 89/163 (54.60%), Postives = 113/163 (69.33%), Query Frame = 1
Query:    1 RMFSGCMDSQTSADVQDVSKFGLP---NADGAGGACTNAMLLTLKDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGINYIGQQGELAGCHNDVSMMKAYI-ATHGYAEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            RMFSGC D QTSADV DVS FGLP      GAGGACTN+++L+L      TW  LL+ M+  L  K F+Q+PQLS+SR + +N  F + NP+G G+T++L IGINY+GQQGEL GCHNDV MMK YI    G+  D +N K+LMDDG H +P H  ++ G +W
Sbjct:   85 RMFSGCKDEQTSADVYDVSSFGLPANTGPGGAGGACTNSIVLSLHKQPECTWTQLLQNMRQVLREKNFTQIPQLSSSRSLSLNSQFTVKNPAGNGRTKALYIGINYVGQQGELRGCHNDVEMMKTYIEGKQGF--DPSNAKVLMDDGRHESPSHLNILQGFQW 245          
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: D7G061_ECTSI (Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G061_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 2.890e-52
Identity = 95/162 (58.64%), Postives = 120/162 (74.07%), Query Frame = 1
Query:    1 RMFSGCMDSQTSADVQDVSKFGLPNADG-AGGACTNAMLLTLKDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGINYIGQQG-ELAGCHNDVSMMKAYIATHGY-AEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            RMFSGC D QTSADV DV+KFG+PN+DG AGGACTNA+L+ +KD    +W+SLLKGM+ TL+TKKF Q+PQ++TS+++DI+  F L    GG K R+LLIGINY+G    EL GCHNDV+ MK YI  HGY AE+  + KI+MDDG H  P    +I+ I W
Sbjct:   56 RMFSGCQDKQTSADVHDVTKFGVPNSDGGAGGACTNALLVNVKDDEPDSWMSLLKGMRTTLSTKKFKQIPQMATSKKLDIHSPFSLAGGEGG-KHRALLIGINYVGDPSVELKGCHNDVAQMKDYIVEHGYPAEEGEDLKIVMDDGEHTAPTRANIIEAIEW 216          
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: D8LTK1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK1_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 5.380e-52
Identity = 92/161 (57.14%), Postives = 119/161 (73.91%), Query Frame = 1
Query:    1 RMFSGCMDSQTSADVQDVSKFGLPNADG-AGGACTNAMLLTLKDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGINYIGQQG-ELAGCHNDVSMMKAYIATHGYAEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            RMFSGC D QTSADV DV+KFG+P +DG AGGACTNA+L+ +KD    +W+SLLKGM+ TL+TKKF Q+PQ++TS+++DI+  F L    GG K R+LLIGINY+G +  EL GCHNDV+ MK YI  HGY+ +  + KI+MDDG H  P    +I+ I W
Sbjct:   52 RMFSGCQDQQTSADVHDVTKFGVPKSDGGAGGACTNALLVNVKDDEPDSWMSLLKGMRTTLSTKKFKQIPQMATSKKLDIHSPFSLAGGEGG-KHRALLIGINYVGDKSAELKGCHNDVAQMKDYIVEHGYSGEGEDLKIVMDDGEHTAPTRANIIEAIEW 211          
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: A0A836C803_9STRA (Metacapase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C803_9STRA)

HSP 1 Score: 175 bits (444), Expect = 8.320e-51
Identity = 88/159 (55.35%), Postives = 111/159 (69.81%), Query Frame = 1
Query:    1 RMFSGCMDSQTSADVQDVSKFGLPNADGAGGACTNAMLLTLKDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGINYIGQQGELAGCHNDVSMMKAYIATHGYAEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            RM SGC D+QTSADVQDVS FGLP+++GAGGACTNA+LL+    S +TW SLL+ MQA L TKK++Q+PQLSTSR +D++  F ++ P      ++LLIGINY+GQQGEL GCHNDV  MK YI   GY +      +LMDDG H +P    +     W
Sbjct:   72 RMISGCQDAQTSADVQDVSSFGLPDSEGAGGACTNALLLSAAQGS-NTWTSLLQKMQAVLKTKKYTQIPQLSTSRDLDLSAPFDIMLPDSKNH-KALLIGINYVGQQGELKGCHNDVEAMKEYIIEQGYTDSPDTMMVLMDDGKHKDPTAANLAKAFAW 228          
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: A0A7S2S7V1_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S7V1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.260e-49
Identity = 87/165 (52.73%), Postives = 116/165 (70.30%), Query Frame = 1
Query:    1 RMFSGCMDSQTSADVQDVSKFGLPN---ADGAGGACTNAMLLTL--KDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDI-NDNFYLINPSGGGKTRSLLIGINYIGQQGELAGCHNDVSMMKAYIATHGYAEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            RMFSGCMDSQTSADV + + F LP      GAGGACTNA++ TL  +  S  TW+ +L+ M+  L+TK + Q+PQLS+SR+ID+ +D F + +P G GK R++LIGINY+GQ+GEL GCHNDV  MK Y+ T G+ +   + K+LMDDG H NP  K ++  I W
Sbjct:   64 RMFSGCMDSQTSADVSNTASFELPEDAGPGGAGGACTNALIATLTKEPESKMTWIQILESMRGILSTKGYEQIPQLSSSRKIDVQHDTFSVNHPDGSGKRRAVLIGINYVGQRGELRGCHNDVISMKTYLETQGFVD--GDMKVLMDDGSHENPTAKNIMSAIDW 226          
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: A0A7S1H0Z8_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H0Z8_HEMAN)

HSP 1 Score: 171 bits (432), Expect = 3.780e-49
Identity = 86/163 (52.76%), Postives = 111/163 (68.10%), Query Frame = 1
Query:    1 RMFSGCMDSQTSADVQDVSKFGLP---NADGAGGACTNAMLLTLKDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGINYIGQQGELAGCHNDVSMMKAYIAT-HGYAEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            RMFSGC D QTSADV DVS FGLP      GAGGACTN+M+L+L       W  LL+ M+  L+ K FSQ+PQLS+SR + +N  F ++NPSG G++++L IGINY+GQQGEL GCHNDV MM+ YI    G+  D +N K+LMD+G    P    ++ G +W
Sbjct:   56 RMFSGCKDEQTSADVYDVSSFGLPADSGPGGAGGACTNSMVLSLHKQPECNWTQLLQNMRGVLSEKGFSQIPQLSSSRSMALNSQFSVMNPSGNGRSKALYIGINYVGQQGELRGCHNDVEMMRQYIEEKQGF--DPSNAKVLMDNGSDEEPTAANILQGFQW 216          
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: L1I610_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I610_GUITC)

HSP 1 Score: 166 bits (420), Expect = 5.290e-47
Identity = 85/161 (52.80%), Postives = 110/161 (68.32%), Query Frame = 1
Query:    4 MFSGCMDSQTSADVQDVSKFGLP---NADGAGGACTNAMLLTLKDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGINYIGQQGELAGCHNDVSMMKAYIATHGYAEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            MFSGC D QTSADV D S FGLP      GAGGACTN+++L L ++   TW+ LL  M+  L  K F+QVPQLS+S++I ++ NF L   S    T++LLIGINY+GQ+GEL GCHNDV  MK YI  +GY  D A+ ++LMDDG + NP    ++D I+W
Sbjct:  101 MFSGCRDEQTSADVYDTSSFGLPADSGPGGAGGACTNSIMLALSENPNPTWIDLLNRMRTILKEKGFTQVPQLSSSKEISLDGNFQLAAASSS--TKALLIGINYVGQKGELRGCHNDVLQMKDYILKNGY--DPASMRVLMDDGSNMNPTRANILDSIKW 257          
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Match: A0A7S0EWY7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EWY7_9CRYP)

HSP 1 Score: 163 bits (412), Expect = 7.150e-46
Identity = 84/161 (52.17%), Postives = 110/161 (68.32%), Query Frame = 1
Query:    4 MFSGCMDSQTSADVQDVSKFGLP---NADGAGGACTNAMLLTLKDSSGSTWLSLLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGINYIGQQGELAGCHNDVSMMKAYIATHGYAEDEANCKILMDDGVHGNPDHKGVIDGIRW 477
            MFSGC D QTSADV D S FGLP      GAGGACTN+++L L ++   TW+ LL  M+  L  K F+QVPQLS+S+++ ++  F L   S    T++LLIGINY+GQQGEL GCHNDV  MK YIA +GY  D A+ ++LMDDG +  P+   ++D I+W
Sbjct:  101 MFSGCRDEQTSADVYDTSSFGLPADSGPGGAGGACTNSIMLALTENPNPTWIELLNRMRTILKEKGFTQVPQLSSSKEVAMDSTFQLAAASSS--TKALLIGINYVGQQGELRGCHNDVLQMKDYIAKNGY--DPASMRVLMDDGSNMVPNRANILDSIKW 257          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14133.6184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0P1_ECTSI1.610e-8477.99Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LJ59_ECTSI1.570e-5858.49Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A7S0YNU0_9CRYP9.890e-5354.60Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
D7G061_ECTSI2.890e-5258.64Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D8LTK1_ECTSI5.380e-5257.14Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A836C803_9STRA8.320e-5155.35Metacapase n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S2S7V1_9STRA3.260e-4952.73Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A7S1H0Z8_HEMAN3.780e-4952.76Hypothetical protein n=3 Tax=Hemiselmis andersenii... [more]
L1I610_GUITC5.290e-4752.80Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S0EWY7_9CRYP7.150e-4652.17Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14133contigM-pyrifera_M_contig14133:3979..8286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.7
Seed ortholog evalue1.7e-47
Seed eggNOG ortholog2880.D8LJ59
Preferred nameMCA5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-type peptidase activity
EggNOG OGsKOG1546@1,KOG1546@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size477
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14133.6184.1prot_M-pyrifera_M_contig14133.6184.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14133 3982..8286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.4337232-UTR-M-pyrifera_M_contig14133:3978..39811622815836.4337232-UTR-M-pyrifera_M_contig14133:3978..3981Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14133 3979..3981 +
1692277597.8796723-UTR-M-pyrifera_M_contig14133:3978..39811692277597.8796723-UTR-M-pyrifera_M_contig14133:3978..3981Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14133 3979..3981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.4456632-CDS-M-pyrifera_M_contig14133:3981..41011622815836.4456632-CDS-M-pyrifera_M_contig14133:3981..4101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 3982..4101 +
1692277597.8912418-CDS-M-pyrifera_M_contig14133:3981..41011692277597.8912418-CDS-M-pyrifera_M_contig14133:3981..4101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 3982..4101 +
1622815836.4587657-CDS-M-pyrifera_M_contig14133:4735..48131622815836.4587657-CDS-M-pyrifera_M_contig14133:4735..4813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 4736..4813 +
1692277597.8994126-CDS-M-pyrifera_M_contig14133:4735..48131692277597.8994126-CDS-M-pyrifera_M_contig14133:4735..4813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 4736..4813 +
1622815836.469037-CDS-M-pyrifera_M_contig14133:5210..52761622815836.469037-CDS-M-pyrifera_M_contig14133:5210..5276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 5211..5276 +
1692277597.9099083-CDS-M-pyrifera_M_contig14133:5210..52761692277597.9099083-CDS-M-pyrifera_M_contig14133:5210..5276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 5211..5276 +
1622815836.4806826-CDS-M-pyrifera_M_contig14133:5920..60341622815836.4806826-CDS-M-pyrifera_M_contig14133:5920..6034Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 5921..6034 +
1692277597.9219062-CDS-M-pyrifera_M_contig14133:5920..60341692277597.9219062-CDS-M-pyrifera_M_contig14133:5920..6034Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 5921..6034 +
1622815836.4930086-CDS-M-pyrifera_M_contig14133:8190..82861622815836.4930086-CDS-M-pyrifera_M_contig14133:8190..8286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 8191..8286 +
1692277597.9313161-CDS-M-pyrifera_M_contig14133:8190..82861692277597.9313161-CDS-M-pyrifera_M_contig14133:8190..8286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14133 8191..8286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14133.6184.1

>prot_M-pyrifera_M_contig14133.6184.1 ID=prot_M-pyrifera_M_contig14133.6184.1|Name=mRNA_M-pyrifera_M_contig14133.6184.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
MFSGCMDSQTSADVQDVSKFGLPNADGAGGACTNAMLLTLKDSSGSTWLS
LLKGMQATLATKKFSQVPQLSTSRQIDINDNFYLINPSGGGKTRSLLIGI
NYIGQQGELAGCHNDVSMMKAYIATHGYAEDEANCKILMDDGVHGNPDHK
GVIDGIRW
back to top

mRNA from alignment at M-pyrifera_M_contig14133:3979..8286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14133.6184.1 ID=mRNA_M-pyrifera_M_contig14133.6184.1|Name=mRNA_M-pyrifera_M_contig14133.6184.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4308bp|location=Sequence derived from alignment at M-pyrifera_M_contig14133:3979..8286+ (Macrocystis pyrifera P11B4 male)
AGGATGTTCTCGGGCTGCATGGACAGCCAGACCTCGGCGGACGTTCAGGA CGTGTCCAAATTCGGTCTGCCCAACGCCGATGGCGCCGGAGGCGCTTGCA CGAATGCCATGCTGCTCACCCTGGTGAGTGCTGTCGGTGCTGCTGGTGCC ATCCTGCTGATGCTGGCATGCTGAGGATTGATGCCAGTAGAGCTAACGCT GTAGCTCCCCACCTGTTCGAGAGGAAATGGTTTACTCACTAGTACTTGTG TACGAGGCAAACGGACTATCATTAACGTTGGCCAATGGTTGATTAAGTCT GATTGGCATAGGCGGAGGGTTACGTTATACTCGTCTCGTGCACAGAGTGT GGAACACCACTTTCTCGGAGAAGTGGTCAAGCTACCCTCGATGATGTTGG CGTGCTGATTGACACCACTCTGTACCAGGTACGAGTAGGTACGCAAGTTT GTGCGTCACTCGCATACATGCAAAGCTGACTTTCGGGGGTTTCTCCAATC TCAAAAGCCGAGGTGTCTTTTTTTTTCTTATATTTTTTCAAGTACTGCTG CTGCTGCTGTTGCTGATACTGCTGCTCTATTTTACGTACGTGCGATTTTA TGTTTTTGACCCCGCGGCTGTTCTTGCTCGACCCATGTAAACATGTAAAC GCCTCCGCATCTTGGTTGTGTGTCCTACGCTGTCGTCGTGCGTGCATGCG TGCGTGCGTGCCGTGCGTGTCCTGCCTGTACCTGTGCCGCCTTTTAACCA ACCGCAGAAGGACAGCTCGGGCAGCACTTGGCTCTCGCTGCTGAAGGGCA TGCAGGCTACCCTCGCCACGAAGAAGTTTTCACAGGTGCGTATGATATGG CCGTCTTATATAGGGGAATCAAAAATCGGTCGAACCCACAGCTCTGCCGC AGTTGTAATAATCTTAAATCTTACCAAAATGAAGTTGGGGCAATGCGTGC GCTGTTTGTTGTGTCGGGGAGGATTTGATTGTTTGATTGTTTGCTATTGA TAGGAGGGTATTATTTTATCAATAGCTTGCTGGTTTTGCTACGGTCGCTT GATATTAATCGCTTGTTAACTTGCTTGCTACTGCTGCTGTGGCTTACTCC CTTGCTTCGTTCTTTTTGTTCCAGTCGCGTATTATTTTTTGTAATTCACC TAGTTGGGTTTTACTAATAGTGTATTTTACTGTCTTCATTTTTCTACGAT GTGCACGCATTGTTTTTTCTTGCTCTCAACAGGTGCCCCAGTTGAGCACG TCCCGCCAAATCGACATTAACGACAACTTCTACCTCATCAACCCCTCTGT GAGTTTTCTAGGTTTCTTTCAGACGCCTTTTTCGGTTGCTTGTGGGAGGA GGCGTAGGGGGGGGGGGGTGTACTCATTATCATGCATGGCCGTAGTCGTT TGGCCATAGACGTAGGGGGGGGGAGGGAAGCAGCGACCCTGGGTTTCCTG CTGGCAGTGAGAGCTGTTGGGTCTTTGTTTTTGGGAGAAGTACGTATTAC GGGGGACCATAGTAAATAGGACCAAATATTGTTAGTAAAAGTAGGTAAAT ATATAGGTTTTTATGTACACCATAGGTCCTTTTAACTATGGACCCTCGCA TCCCTGCTATGCCGGAACGGAGCACGTCGGGTTTCACCAGCCAGGCAAGA CATTGATTGTTTGAACCAAGCGCGAAGCGCTGCGAGGTGTTTGGGCGATT CACATCTAGGCTGCTGTGTTGAATGGTGCATGAAGTGTACCTTTCCTGGC TGATTTTATTGGCCACAAGGTTTGCCGTTGGGTCCTGTTTGGCATACAGT ACGCTTCATCAGATTCTCTACAACAGTGTTCATGCTCATTGGTCTAGGTT GCACCGCATTTGGATCAGGTTGCACCGCATTTTTTGTGTATCGTATCGTC ATCTGTTGCTGCTTTGGTTGTTCTTGTTTGGCGTGCGAGCAGGGAGGCGG GAAGACGCGCTCGCTGTTGATCGGCATCAACTACATTGGGCAGCAGGGGG AGTTGGCCGGTTGCCACAACGATGTCAGCATGATGAAGGCGTACATCGCA ACACATGTGAGCTGCCGCGCGTAGTGCCATCGTGCCTTGCTCCATCCACC GTGCCCCACCCCCAACCCCACCCTCGTAAACTGCTTGCGTTTGCGGTATT GTATGTACTCCTTCGCAAACGGCGGGGCAGGGTGTGTCCTACACTCCGCG AAGCACCGCGCTGAAAGGGAACTCACATTGCACGGACAGATCGATCACGC CATCCATGATACCAGTATACAGTAGAGCTCCGTCGGCTATTTGGTAGAGC GTTTGCCTCGTAAGCAGGAGGTCAAGAGTTCGAGCCTCCATCCCCGCGCC TTTTTTTGTCCTGCTGTTGCGTCGGGAGCTACGGGTTGAATTTACACACG ACACGTATTCTAGACGTGGAAAATGTGGTGAGCTTGACTTAAGCTTTTGG TTTTTACCGATCCGCCGAAGGATAGAAAGAAAGAAAGAAAAACAGAAAAA TGAGATAGATCGTGTCATACCATACGATCGTCTACATCCCGCATTAGCTG TTGCGAAACGTTGAACGCTGCCGCGCAAGAACTGTGTGATACAGATCATG CGGCAAACATGATGTACTCGTAGATGAGATGGTGCAAATCATACCTGATA TGGATGAGGGACATGTCTGTCCTGAAATGTTTAGACCATCATTTTGGGGG CCTCTTCTGTGCTCAAAATGTGGAATACATAATAAAGGGTACTGGTAGCA TTATAGTTTCGAGTATTAGTAAATAGGACCAAATATTTTTAGTAAAAATG GTTAAATATACGGGTGTTGTGTGTACCGTAGGTCCTATTTACTATTTACT ATGGTCCCCCGAATTGTTAATAATAGTACCAGGCACCTGTGGCAATATTT TGTTGTTGGGAGTTTATACGTACGTACGACGCTTTTTTTGTATGTTTGTT TTTTTGTCGGCGGTTCGTCCGTATCACAGCCGGCTTTAGTCGAAAGTCGG CCACAGCAGTTTAGCAGTATTATCGGTGCGTGGGTGTTCACGATTCACGA TTTTTTCTTGGCAATGCATTATGACCTCATATATAATACCATACCCACTC TGTCTTGAAATAGATTGACCTTTTTGATTAAAGTATTAATATGAATACGT CCCCTATATTTTGGGACAGCGAACGCGTGTCACGGTAGGCGTATTATAGC GCCCAAGCCTTCCGAGGCTCTTCACCCACTTGATTATAGTATAGGCCCAA AAACTGAGTCCGAGAAAAGCCTTACTACTTATATTAATACCAGGTAGGTA TTTCGTTCGTGGCGGTGTAAAGCACTATTTTTTTACGGGGGACCATAGTA AATAGGACCTATGGTAACACACTATAACCCACATATTTACATTTTTTTAC CAACAATATTTGATCCTGTTTACTATGGTCCCCCGTAGTAATACTTAAAA GAGTGGTATTTCCAACGATATTGGATTATAAGGAGAATAAAAAAAACTTA TACCTGGTATCTAAGAGAGAGGGGTGGCCCCGTGTCGACGAACTACTGCT GCAGCTGGGCTCTCTCTCTGCTGTGCTGCTTGTGCCTTGTCGTGATTTCG ACGCTATTTATGGTTGGTAAGGGAAGGAAGGGGCTGAAGTCGTCTCGCGA TGAAAGAAGAAGGCACGAACCGTACGTAGTGGGGAGGGCGGGGGGGGGGC GAGGAGGAGAGCCTGTTGCTGCTGCTGCTACCTACATGTGGGAGTCCGGA TCTGAGTTGCGAGTTGCGACCGCAGCAGGGGGGAGAGAGAGAAAAAAAGA AGGGCCTACAAAATAAATGAGACGGAGGACAGAAATAAAATAAATATGAC ATGCCTTGCTACTGCTTGCCTGCCCTCCCTACCTCCCTCCGTCCGTCTCC GCGGAGTTTTGGCCACGCGCCGAGCTTATCCAGACGATGTATGTACGTAA GTATGTACGTACGTACGGCATCAACGTGTGCGTATCATTTATTTGTTGTT TTTTGTAACTCAACAAAACGCCTGTACGTGTACATCGCTTCTTTCTTGCC TGTTTTGCTTTTGCTCTGGCTTTTCGCCTTTTCTTGCCTGTTTTGCTTTT GCTCTGGCTTTTCGCCTTTTTGTCTTTGATCCCCCCCCCTTCTCCTTCTC CTCCACCAACATCCTCCACTCTCCTTGTGCGTGGGTTTGCTTTGCTTTCT GTTTTTTGGCAGGGCTACGCCGAAGACGAGGCGAACTGCAAGATCCTCAT GGACGATGGAGTACACGGTAACCCCGATCACAAGGGGGTCATCGACGGCA TCAGGTGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig14133:3979..8286+

>mRNA_M-pyrifera_M_contig14133.6184.1 ID=mRNA_M-pyrifera_M_contig14133.6184.1|Name=mRNA_M-pyrifera_M_contig14133.6184.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig14133:3979..8286+ (Macrocystis pyrifera P11B4 male)
ATGTTCTCGGGCTGCATGGACAGCCAGACCTCGGCGGACGTTCAGGACGT
GTCCAAATTCGGTCTGCCCAACGCCGATGGCGCCGGAGGCGCTTGCACGA
ATGCCATGCTGCTCACCCTGATGTTCTCGGGCTGCATGGACAGCCAGACC
TCGGCGGACGTTCAGGACGTGTCCAAATTCGGTCTGCCCAACGCCGATGG
CGCCGGAGGCGCTTGCACGAATGCCATGCTGCTCACCCTGAAGGACAGCT
CGGGCAGCACTTGGCTCTCGCTGCTGAAGGGCATGCAGGCTACCCTCGCC
ACGAAGAAGTTTTCACAGAAGGACAGCTCGGGCAGCACTTGGCTCTCGCT
GCTGAAGGGCATGCAGGCTACCCTCGCCACGAAGAAGTTTTCACAGGTGC
CCCAGTTGAGCACGTCCCGCCAAATCGACATTAACGACAACTTCTACCTC
ATCAACCCCTCTGTGCCCCAGTTGAGCACGTCCCGCCAAATCGACATTAA
CGACAACTTCTACCTCATCAACCCCTCTGGAGGCGGGAAGACGCGCTCGC
TGTTGATCGGCATCAACTACATTGGGCAGCAGGGGGAGTTGGCCGGTTGC
CACAACGATGTCAGCATGATGAAGGCGTACATCGCAACACATGGAGGCGG
GAAGACGCGCTCGCTGTTGATCGGCATCAACTACATTGGGCAGCAGGGGG
AGTTGGCCGGTTGCCACAACGATGTCAGCATGATGAAGGCGTACATCGCA
ACACATGGCTACGCCGAAGACGAGGCGAACTGCAAGATCCTCATGGACGA
TGGAGTACACGGTAACCCCGATCACAAGGGGGTCATCGACGGCATCAGGT
GGGGCTACGCCGAAGACGAGGCGAACTGCAAGATCCTCATGGACGATGGA
GTACACGGTAACCCCGATCACAAGGGGGTCATCGACGGCATCAGGTGG
back to top