mRNA_M-pyrifera_M_contig14101.6176.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14101.6176.1
Unique NamemRNA_M-pyrifera_M_contig14101.6176.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: D7FQS5_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS5_ECTSI)

HSP 1 Score: 582 bits (1501), Expect = 1.970e-202
Identity = 287/335 (85.67%), Postives = 314/335 (93.73%), Query Frame = 1
Query:    1 RQEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLPELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLKGEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            +QEADRASLYLD STRKLL+  AE QLLKPHTQALLERGF SLMDSQRLPELK+MYQLFQRV ALDELKAAMTAYV S+GLYIV DK+NDK+M+SNLLAFRA+LD  ++ ACD NESYRYKLKEAWE FLNARHNRPAELMAKFLD+KLKGEKG SDD+VE VL++VMVLFRYLQGKDVFEAFYK+DLAKRLLLGKSSSFDLE+SMISKLKTECGSAFTSKLEGMFKDIDLSRDLM+TY HHLK KL DRTVFKLDKSR+MDLHVQVLTTGYWP YP+ +VGMP+EM+EHVECF+ YYQNKYQGRRLVWQP+LGQCV+KVAFP+GRKELA+SQLQ
Sbjct:  252 QQEADRASLYLDSSTRKLLVTTAESQLLKPHTQALLERGFGSLMDSQRLPELKVMYQLFQRVQALDELKAAMTAYVQSKGLYIVHDKDNDKQMISNLLAFRAKLDECINTACDGNESYRYKLKEAWEAFLNARHNRPAELMAKFLDVKLKGEKGTSDDEVEAVLERVMVLFRYLQGKDVFEAFYKKDLAKRLLLGKSSSFDLERSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMTTYSHHLKTKLHDRTVFKLDKSREMDLHVQVLTTGYWPGYPAMEVGMPDEMKEHVECFRCYYQNKYQGRRLVWQPVLGQCVLKVAFPKGRKELAVSQLQ 586          
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: A0A6H5K1D7_9PHAE (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D7_9PHAE)

HSP 1 Score: 433 bits (1114), Expect = 1.080e-148
Identity = 209/243 (86.01%), Postives = 230/243 (94.65%), Query Frame = 1
Query:  277 MVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLKGEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            M+SNLLAFRA+LD  ++ ACD NESYRYKLKEAWE FLNARHNRPAELMAKFLD+KLKGEKG SDD+VE VLD+VMVLFRYLQGKDVFEAFYK+DLAKRLLLGKSSSFDLE+S+ISKLKTECGSAFTSKLEGMFKDIDLSRDLM+TY HHLK KL DRTVFKLDKSR+MDLHVQVLTTGYWP YP+ +VGMP+EM+EHVECFK YYQNKYQGRRLVWQP+LGQC++KVAFP+GRKELA+SQLQ
Sbjct:    1 MISNLLAFRAKLDECINTACDGNESYRYKLKEAWEAFLNARHNRPAELMAKFLDVKLKGEKGTSDDEVEAVLDRVMVLFRYLQGKDVFEAFYKKDLAKRLLLGKSSSFDLERSIISKLKTECGSAFTSKLEGMFKDIDLSRDLMTTYSHHLKTKLHDRTVFKLDKSREMDLHVQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQ 243          
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: A0A835ZG50_9STRA (Cullin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG50_9STRA)

HSP 1 Score: 386 bits (992), Expect = 3.690e-125
Identity = 194/335 (57.91%), Postives = 254/335 (75.82%), Query Frame = 1
Query:    4 QEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLPELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARH-NRPAELMAKFLDLKLKGEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            QEA+RA+ YLDP TRK L+A+ E +LL PH  ALL+RG  +L+D+QR  +L  +Y L +RVHALD+LKA +  YV +RG   + D+  D E+V+ LL  RARLD  +  A   +E      + AWE FLNA   +RPAELMAK+LDL+L+GEKG++D++VE VLD+VM+LFRYL+GKDVFEAFYKRDL+KRLLL KS+S DLE SM++KLK ECG+A+TSKLEGMF+DI+LSRDLM+ Y +HL+   +D + F   +SRD+D+ V VLTTGYWPAYP  DV +P E+Q+H+  F+ +Y  K+QGRR+ WQ  LG C++K  FP GRKELA+SQLQ
Sbjct:  301 QEAERAARYLDPGTRKPLLAEVEARLLAPHVAALLDRGLDALLDAQRTADLARLYMLLRRVHALDQLKAGLVMYVKARGAAALADRARDAELVAALLEQRARLDAALADAFARDEVLARACRGAWEAFLNAGGGSRPAELMAKYLDLRLRGEKGVTDEEVEAVLDRVMILFRYLEGKDVFEAFYKRDLSKRLLLSKSASADLEASMVAKLKAECGAAYTSKLEGMFRDIELSRDLMANYTNHLRDHREDPSFFTHARSRDIDVSVHVLTTGYWPAYPPADVAVPAEIQDHMARFEDFYAIKFQGRRIAWQHNLGHCILKARFPSGRKELAVSQLQ 635          
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: A0A1U7ZI11_NELNU (cullin-4-like isoform X2 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZI11_NELNU)

HSP 1 Score: 357 bits (916), Expect = 1.190e-114
Identity = 182/335 (54.33%), Postives = 247/335 (73.73%), Query Frame = 1
Query:    4 QEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLPELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLK-GEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            +E +R  LYLD STRK L+A AE QLL+ HT A+L++GFA LMD  R+ +L+ MY LF RV+AL+ L+ A+++Y+   G  IV+D+E DK++V +LL F+A LD   +++   NES+   +K+A+E  +N R NRPAEL+AKFLD KL+ G KG S++++E  LDKV+VLFR++QGKDVFEAFYK+DLAKRLLLGKS+S D EKSMISKLKTECGS FT+KLEGMFKDI+LS+++  ++    +A+       KL    ++ +HV  LTTGYWP YP  DV +P E+  + + FK +Y +KY GRRL+WQ  LG CV+K  FP+G+KELA+S  Q
Sbjct:  337 EEHERCLLYLDASTRKPLVATAERQLLEHHTSAILDKGFAMLMDGNRIEDLQRMYSLFSRVNALESLRQALSSYIRGTGQGIVMDEEKDKDLVPSLLEFKASLDTIWEESFSRNESFSNTIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQART------KLPSGIEISVHV--LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ 663          
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: A0A2K3NNX1_TRIPR (Cullin-4-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NNX1_TRIPR)

HSP 1 Score: 350 bits (899), Expect = 1.980e-114
Identity = 179/336 (53.27%), Postives = 246/336 (73.21%), Query Frame = 1
Query:    1 RQEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLPELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLK-GEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            ++E +R  +YLD ST+K LI   E QLL+ H  A+L++GF+ LMD  R+ +L+ M+ LF RV+AL+ LK A+++Y+   G  IV+D+E DK+MV +LL F+A LD T +++   NE++   +K+A+E  +N R NRPAEL+AKFLD KL+ G KG S++++E  LDKV+VLFR++QGKDVFEAFYK+DLAKRLLLGKS+S D EKSMISKLKTECGS FT+KLEGMFKDI+LS+++  ++    +A+       KL    +M +HV  LTTGYWP YP  DV +P E+  + + FK +Y +KY GRRL+WQ  LG CV+K  FP+G+KELA+S  Q
Sbjct:   94 QEEHERCLIYLDASTKKSLIQTTEAQLLERHIPAILDKGFSVLMDGNRIEDLQRMHSLFSRVNALESLKQALSSYIRRTGQGIVMDEEKDKDMVQSLLEFKAALDTTWEESFAKNEAFGNTIKDAFEHLINLRQNRPAELIAKFLDDKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFRQSSQART------KLPSGIEMSVHV--LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKKELAVSLFQ 421          
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: A0A3B6KNY6_WHEAT (CULLIN_2 domain-containing protein n=2 Tax=Triticum TaxID=4564 RepID=A0A3B6KNY6_WHEAT)

HSP 1 Score: 352 bits (903), Expect = 4.710e-114
Identity = 180/336 (53.57%), Postives = 247/336 (73.51%), Query Frame = 1
Query:    1 RQEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLPELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLK-GEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            ++E DR  LYL+ +TRK LIA  E QLL+ HT A++E+GF  LM++ R+ +L  MY LFQRV A++ LK A++ Y+   G  I++D+E DK++V  LL F+A LD  ++++   NE++   +KE++E  +N R NRPAEL+AKFLD KL+ G KG S++++E +LDKV+VLFR++QGKDVFEAFYK+DLAKRLLLGKS+S D EKSMI+KLKTECGS FT+KLEGMFKDI+LS+++  ++    +A+       KL    +M +HV  LTTGYWP YP  DV +P E+  + + FK +Y +KY GRRL+WQ  LG CV+KV FP+GRKELA+S  Q
Sbjct:  123 QEEHDRCILYLEANTRKPLIATTEKQLLQRHTSAIIEKGFTVLMEANRVTDLSRMYTLFQRVDAIEMLKQALSLYIRGTGQGIIMDEEKDKDLVPFLLEFKASLDKILEESFAKNEAFSNTIKESFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGILDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINDSFKQSSQART------KLPTGIEMSVHV--LTTGYWPTYPPMDVKLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKVEFPKGRKELAVSLFQ 450          
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: A0A0L9VF93_PHAAN (CULLIN_2 domain-containing protein n=10 Tax=fabids TaxID=91835 RepID=A0A0L9VF93_PHAAN)

HSP 1 Score: 356 bits (914), Expect = 6.910e-114
Identity = 183/336 (54.46%), Postives = 249/336 (74.11%), Query Frame = 1
Query:    1 RQEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLPELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLK-GEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            ++E +R  +YLD STRK LIA AE QLL+ H  A+L++GFA LMD  R+ +L+ MY LF RV+AL+ L+ A+++Y+   G  IVLD+E DK+MVS+LL F+A LD T +++   NE++   +K+++E  +N R NRPAEL+AKFLD KL+ G KG S++++E  LDKV+VLFR++QGKDVFEAFYK+DLAKRLLLGK++S D EKSMISKLKTECGS FT+KLEGMFKDI+LS+++  ++    +A+       KL    +M +HV  LTTGYWP YP  DV +P E+  + + FK +Y +KY GRRL+WQ  LG CV+K  FP+G+KELA+S  Q
Sbjct:  296 QEEHERCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFAMLMDGNRIEDLQRMYSLFLRVNALESLRQAISSYIRRTGQGIVLDEEKDKDMVSSLLEFKASLDTTWEESFSKNEAFCNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKTASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQART------KLPSGIEMSVHV--LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ 623          
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: A0A8J5S0Q0_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S0Q0_ZIZPA)

HSP 1 Score: 350 bits (899), Expect = 1.010e-113
Identity = 178/336 (52.98%), Postives = 248/336 (73.81%), Query Frame = 1
Query:    1 RQEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLPELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLK-GEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            ++E +R  LYL+ +TRK LIA  E QLL+ HT A+LE+GF  LM++ R+ +L  +Y LFQRV A++ LK A+++Y+   G  I++D+E DKE+V  LL F+A LD  ++++   NE++   +KE++E  +N R NRPAEL+AKFLD KL+ G KG S++++E +LDKV+VLFR++QGKDVFEAFYK+DLAKRLLLGKS+S D EKSMI+KLKTECGS FT+KLEGMFKD++LS+++  ++    +A+       KL    +M +HV  LTTGYWP YP  DV +P E+  + + FK +Y +KY GRRL+WQ  LG CV+KV FP+G+KELA+S  Q
Sbjct:   96 QEEHERCILYLEANTRKPLIATTEKQLLQQHTSAILEKGFTMLMEANRVKDLSRIYTLFQRVDAIELLKQALSSYIRGTGQGIIMDEEKDKELVPFLLEFKASLDRILEESFAKNEAFSNTIKESFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGILDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMITKLKTECGSQFTNKLEGMFKDVELSKEINESFKQSSQART------KLPSGIEMSVHV--LTTGYWPTYPPMDVKLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKVEFPKGKKELAVSLFQ 423          
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: A0A6A6MY07_HEVBR (CULLIN_2 domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MY07_HEVBR)

HSP 1 Score: 355 bits (912), Expect = 1.180e-113
Identity = 184/335 (54.93%), Postives = 245/335 (73.13%), Query Frame = 1
Query:    4 QEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLPELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLK-GEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            +E +R  LYLD STRK LIA AE QLL+ H  A+L++GF  LMD  R+ +LK MY LF RV+AL+ L+ A+++Y+   G  IV+D E DK+MVS+LL F+A LD   +++   NE++   +K+A+E  +N R NRPAEL+AKFLD KL+ G KG S++++E  LDKV+VLFR++QGKDVFEAFYK+DLAKRLLLGKS+S D EKSMISKLKTECGS FT+KLEGMFKDI+LS+++  ++    +A+       KL    +M +HV  LTTGYWP YP  DV +P E+  + + FK +Y +KY GRRL+WQ  LG CV+K  FP+G+KELA+S  Q
Sbjct:  299 EEHERCLLYLDASTRKPLIATAERQLLERHISAILDKGFMMLMDGHRIADLKRMYSLFLRVNALESLRQALSSYIRRTGQGIVMDDEKDKDMVSSLLEFKASLDTIWEESFSKNEAFCNTIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQART------KLPSGIEMSVHV--LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ 625          
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Match: A0A1U7Z694_NELNU (cullin-4-like isoform X1 n=5 Tax=Proteales TaxID=232378 RepID=A0A1U7Z694_NELNU)

HSP 1 Score: 357 bits (916), Expect = 1.420e-113
Identity = 182/335 (54.33%), Postives = 247/335 (73.73%), Query Frame = 1
Query:    4 QEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLPELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAFRARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLK-GEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSFDLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDRTVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQNKYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ 1005
            +E +R  LYLD STRK L+A AE QLL+ HT A+L++GFA LMD  R+ +L+ MY LF RV+AL+ L+ A+++Y+   G  IV+D+E DK++V +LL F+A LD   +++   NES+   +K+A+E  +N R NRPAEL+AKFLD KL+ G KG S++++E  LDKV+VLFR++QGKDVFEAFYK+DLAKRLLLGKS+S D EKSMISKLKTECGS FT+KLEGMFKDI+LS+++  ++    +A+       KL    ++ +HV  LTTGYWP YP  DV +P E+  + + FK +Y +KY GRRL+WQ  LG CV+K  FP+G+KELA+S  Q
Sbjct:  337 EEHERCLLYLDASTRKPLVATAERQLLEHHTSAILDKGFAMLMDGNRIEDLQRMYSLFSRVNALESLRQALSSYIRGTGQGIVMDEEKDKDLVPSLLEFKASLDTIWEESFSRNESFSNTIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQART------KLPSGIEISVHV--LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ 663          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14101.6176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQS5_ECTSI1.970e-20285.67CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K1D7_9PHAE1.080e-14886.01CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZG50_9STRA3.690e-12557.91Cullin family-domain-containing protein n=1 Tax=Tr... [more]
A0A1U7ZI11_NELNU1.190e-11454.33cullin-4-like isoform X2 n=1 Tax=Nelumbo nucifera ... [more]
A0A2K3NNX1_TRIPR1.980e-11453.27Cullin-4-like protein n=1 Tax=Trifolium pratense T... [more]
A0A3B6KNY6_WHEAT4.710e-11453.57CULLIN_2 domain-containing protein n=2 Tax=Triticu... [more]
A0A0L9VF93_PHAAN6.910e-11454.46CULLIN_2 domain-containing protein n=10 Tax=fabids... [more]
A0A8J5S0Q0_ZIZPA1.010e-11352.98Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A6A6MY07_HEVBR1.180e-11354.93CULLIN_2 domain-containing protein n=1 Tax=Hevea b... [more]
A0A1U7Z694_NELNU1.420e-11354.33cullin-4-like isoform X1 n=5 Tax=Proteales TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14101contigM-pyrifera_M_contig14101:187..7890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score588.2
Seed ortholog evalue2.4e-165
Seed eggNOG ortholog2880.D7FQS5
KEGG koko:K10609
KEGG Pathwayko03420,ko04120,map03420,map04120
KEGG ModuleM00385,M00386
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0019899,GO:0031461,GO:0031625,GO:0032991,GO:0033554,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0080008,GO:1902494,GO:1990234
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2167@2759
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-01_000330.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121,ko04147
Exons8
Model size1005
Cds size1005
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14101.6176.1prot_M-pyrifera_M_contig14101.6176.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14101 187..7890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.4277844-CDS-M-pyrifera_M_contig14101:186..2851622815835.4277844-CDS-M-pyrifera_M_contig14101:186..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 187..285 +
1692277597.143429-CDS-M-pyrifera_M_contig14101:186..2851692277597.143429-CDS-M-pyrifera_M_contig14101:186..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 187..285 +
1622815835.4394677-CDS-M-pyrifera_M_contig14101:1096..11981622815835.4394677-CDS-M-pyrifera_M_contig14101:1096..1198Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 1097..1198 +
1692277597.1549034-CDS-M-pyrifera_M_contig14101:1096..11981692277597.1549034-CDS-M-pyrifera_M_contig14101:1096..1198Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 1097..1198 +
1622815835.4491444-CDS-M-pyrifera_M_contig14101:1751..18111622815835.4491444-CDS-M-pyrifera_M_contig14101:1751..1811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 1752..1811 +
1692277597.1649802-CDS-M-pyrifera_M_contig14101:1751..18111692277597.1649802-CDS-M-pyrifera_M_contig14101:1751..1811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 1752..1811 +
1622815835.463674-CDS-M-pyrifera_M_contig14101:3030..31671622815835.463674-CDS-M-pyrifera_M_contig14101:3030..3167Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 3031..3167 +
1692277597.178902-CDS-M-pyrifera_M_contig14101:3030..31671692277597.178902-CDS-M-pyrifera_M_contig14101:3030..3167Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 3031..3167 +
1622815835.4775896-CDS-M-pyrifera_M_contig14101:3460..35771622815835.4775896-CDS-M-pyrifera_M_contig14101:3460..3577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 3461..3577 +
1692277597.1877153-CDS-M-pyrifera_M_contig14101:3460..35771692277597.1877153-CDS-M-pyrifera_M_contig14101:3460..3577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 3461..3577 +
1622815835.4906275-CDS-M-pyrifera_M_contig14101:5908..60261622815835.4906275-CDS-M-pyrifera_M_contig14101:5908..6026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 5909..6026 +
1692277597.1977568-CDS-M-pyrifera_M_contig14101:5908..60261692277597.1977568-CDS-M-pyrifera_M_contig14101:5908..6026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 5909..6026 +
1622815835.504491-CDS-M-pyrifera_M_contig14101:6654..69051622815835.504491-CDS-M-pyrifera_M_contig14101:6654..6905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 6655..6905 +
1692277597.2097933-CDS-M-pyrifera_M_contig14101:6654..69051692277597.2097933-CDS-M-pyrifera_M_contig14101:6654..6905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 6655..6905 +
1622815835.514538-CDS-M-pyrifera_M_contig14101:7769..78901622815835.514538-CDS-M-pyrifera_M_contig14101:7769..7890Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 7770..7890 +
1692277597.2272465-CDS-M-pyrifera_M_contig14101:7769..78901692277597.2272465-CDS-M-pyrifera_M_contig14101:7769..7890Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14101 7770..7890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14101.6176.1

>prot_M-pyrifera_M_contig14101.6176.1 ID=prot_M-pyrifera_M_contig14101.6176.1|Name=mRNA_M-pyrifera_M_contig14101.6176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=335bp
RQEADRASLYLDPSTRKLLIAQAEGQLLKPHTQALLERGFASLMDSQRLP
ELKLMYQLFQRVHALDELKAAMTAYVHSRGLYIVLDKENDKEMVSNLLAF
RARLDVTVDKACDANESYRYKLKEAWEGFLNARHNRPAELMAKFLDLKLK
GEKGMSDDDVENVLDKVMVLFRYLQGKDVFEAFYKRDLAKRLLLGKSSSF
DLEKSMISKLKTECGSAFTSKLEGMFKDIDLSRDLMSTYLHHLKAKLDDR
TVFKLDKSRDMDLHVQVLTTGYWPAYPSTDVGMPEEMQEHVECFKWYYQN
KYQGRRLVWQPMLGQCVVKVAFPRGRKELALSQLQ
back to top

mRNA from alignment at M-pyrifera_M_contig14101:187..7890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14101.6176.1 ID=mRNA_M-pyrifera_M_contig14101.6176.1|Name=mRNA_M-pyrifera_M_contig14101.6176.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7704bp|location=Sequence derived from alignment at M-pyrifera_M_contig14101:187..7890+ (Macrocystis pyrifera P11B4 male)
CGGCAGGAGGCGGACCGAGCGTCGCTGTACCTAGACCCGTCGACGCGAAA ACTGCTCATTGCGCAGGCGGAGGGACAGCTGCTGAAGCCCCACACCCAGG TAGATGTTGGATGTGCGCGCAATACCATGTTGGTGTGAGTTGTTTGTTCG CTTTCTTGCTTGGTTGATTTTTCGGTAGTAGGTCCGTCTTTAGTATGTTT TGCTTGCTTGTTTGTGTGCCTGCTAGTTGTATTGTGTGTTTGTTAGTTGC ATGTTTGCTGTCGCACGCTCATGATTTCGTGGCTGGCTTGTGCTGTGATG ACAACATCTAAGGGCGGTTGGAGACGTGCGGGGTGGTCCTTGTAGGCCTG TGCAGATGAGGCGTTTCGGTGCAGGGACAGCTATTGCGATATCGTCCGGG CACAACCGTTTTGAGAAAATCGCTTGCTTGGATTGCCGCTACCGCGATGC CTATCGTACCCGCAATGCTGGTCGTACCTCGATGTGGCAATCTTGAAGCG GTGCAGTAACTCGGAAGGCGGAGGTATCAAAGTTGTCGCAGTTTGCGACT TCGCTTGATTGCGTCCTTGCGGTATCACCATCCCCTCTTCCTAGCGTGAG AGGAACGCACTATTGCACCATGTGTTTGTAGTCTTAGTATGCGGGTTCTG GCAACTGTCGTGGCCTTTCTTTTCTATGTTGCACTGTTGAACGTGGCTTA CGTAGCCTCCAGGTTATTCCTTACGATATACCTTGTATGAATAATTGTGG TTAGTTAGTGCAGGCGAGAGGCGGAGAAACCTGCAGTTGATTGGCTACAG TATTTAGCGACGGGTTAGTTTTTTCTCTGGAATTTTTTTGTCGTGACTCT GCCAGTGCGTTCTTCGTGTGGGCTCCACGCAGTTACTGACCGCTGCATTG TGTGCTGCAGGCGTTGCTGGAGAGGGGATTCGCAAGCCTGATGGATTCGC AGCGATTGCCCGAGCTGAAGCTCATGTACCAGCTGTTCCAAAGGGTGCAT GCGTTAGACGAGGTGAATTTTTGCAGTAATTTTTTTTTTAGAACGCCTAT GATGAGACAACGTTTCTAACAATGTTCTGAGGAACGTTTTCGAGAATTTT CTGAAAACGTTCTGCGGGTCTAGAGCAAGCGTAAGATTGTATGAGGCGAT CGTGGTGTAGCGCATCTTTTCGAGAAACATCTGCATGGTATTCTTCGATG CCCCGCCCCGACGGCCAGTTGTGTTTGTCCGCAGAGCTATGCGTGATACC TGGTAGTCCGCTACTAAATAGTTTGCAGGATGTTGCCCATTCCTACGTTG GTCGTATCAATCGGGCGATTGACAGCAGGAGGCGTTGTGAAACAAGAGAT AAACTGCGTCATGCGAGGCGTAGCAGTAGTAGACAGTAGACAGGCCGTAG CAGCACCCGTCAGCGGCAACGGCGCTAATTCCATGGATAGCACGTGCGTT ATGCTGCTGCTTCATGACACCCCGATCCTTGCATGTTTAACGCTTGCCCT TGGCCCGCCGCTGCTGCGCGCTTTTGTCGCTGGTGCCCTTCGGTGATTTC TCTCTCGGAGAGCAGCTCAAGGCCGCTATGACTGCCTACGTACATTCCCG GGGCCTGTACATCGTACTCGACAAGGTGCACACTGGGTTTCCGCTTTTTT CGGAGGCGTGTCCTCGCTCAGCTGAAATAAACGGCAGTTAGTCTGCCATT GGTACTATTGACACTTCAGATATGTGTACGTACAGTATAGCGAAGCGTTT CTAGTGTGTTTTGATGTAGGGCGGCGGGTGACGCCTGATCAATGCAGGTT GCGTGCGTGGCGAAATAAGATGGGACTTATGGTGTAGTTGCTGGCAGGCT GACTGTGCAACGCCGGAGGTGTCGCAATCTCCGGTATTCTGCTGTTTTTG ACGTGATTTTCGACGCTGTTTTCTGCGCGGCTTAGCGTTCCCACTTCCTT TACCGCTAGGCCATTAAATAGATAGCTGCTGTGGCTATGGTTGCTGGTTG CTGTGTGTGATGTGGCTACTCTAGCTGCTGTGCCTGCTGTGGGTACTGTG GGTACCGTCAGATTGTCCACGCTGTGGCTACTCTAGCTTGTGAACTTCAG AGGACATCCGGGCTACACCACCTACCGCACGAAAGCCGAGAATGTGCCCC GGATGTCCCCATGTCGACCACAAGCTGCCGTGGCTGCCTGTGGTTTGATA CACAGATTTTGCTGACGCTGTGTCATAGGTGCGGTTGCTATACAGCTATT CGCTGTTGATACGCAGCTATCGCTGACACGGCTGCGTCATTGTTTGCGTT CTTTTGCTTCGCCGGTCGCTGTTGATACACAGCCATTGCCGACGCGGTTG TGTCATAGTTGGGGTAGCTCTACCATTGGTCGCTGCTGTCGCTGCTGTCG CTGCTGTCGCTGCTGTGCCTGCTGTGCCTGCCGTGGCTGCTGTGGCTACT GCAACAGTCGCCTTTGCAGCGATAGACCTAGCCTGTGATTCGCGCGATGC CCAACGTGATCGCTGCCGCGATACGCTTTATTTCGCTGTCCGTAACGCGA CTTATCGCGGTATGTGCTTTCTGTAACGCTTCGCAATGCTCTTGAACTCT CTCGTACATAGCGCGACGCAGCGCGGCACGTGCTCTCCATAACGCTTCGT GTTACTCTGGAACTTCCTTGAAATTGCGTTGAAGTCTGTACGTTGAGCTA AAAATGGTGCGCGACGCCATTTTGTTTAGGTCACGGCACGGCGGTCATGG TTTGATTTTTAAAAATATTCACGGACGAAAAACAGAATCGTTTTCTCACG AGCTAGATGATTGCGCCGCGAAACCTAACGTAAACCAACGACAGGAGAAC GACAAGGAAATGGTGTCCAACCTGCTGGCCTTTAGGGCGCGACTGGACGT GACCGTCGACAAGGCCTGCGACGCCAACGAGTCCTACCGATACAAGCTCA AGGAAGCGTGGGAGGGCTTCCTGAACGCCAGGTAGCGCGCCAGTGTTGTG TTCATAAAGCTGTACGTATATATATATATGTATATATGCCTGGTACGATT TATACACGCCATACGTACTATATTGATTGGGAGCGACAGGCCCCTGGTAG TCTCATTCTTGTCGCTTTTTTTCTCACCTCATTACCCCCCCTCTCCCTCC CTCCCGCCGTCCCTCCTTCCCCTCCCTTCCTCCCTCCCCCCTCCCCCGCC CTCTTGGTCGTCATGTTGCGTTTGGCAACGGTTTCATTCCCTTTCGCGGC GGTTTCGTTTCGGTTGGGCGACAGGCACAACCGGCCGGCAGAACTGATGG CGAAATTCCTGGACTTAAAGTTGAAGGGGGAAAAGGGGATGTCGGACGAT GACGTGGAAAACGTTCTCGACAAAGTCATGGTACTTTTCAGGTAAACCTG CTGTACAAGACAACTTGAGTATGTAGACTGCAGTATTCTATGAATAGGCG ACATCTTTTCATCCCTTCAAAACCGCAACGACGTTTGGGGAAAATAAACT GTTCGGAAGTAGAGTTGGAAAAGTCTCGCACGGGTCAACGTGATGAAAAA CTGTTTTTTTTTGCTGTTTTGGACCAGGCTCAGATTCCTACCAGTATGTG CGACAGACTGTGTGTGCCCTACACTACCTCAATAGCGTTGAATGCACACA GGGTTTGCCAGCACCAAAGGAGGCGTTTTCGGAAATATATGCTCGAGAGC CTTTGGAAAATAGAAATGTCATGTTCGACGTTAGACCTATGACAATGGGA ATGCGAAGGTTGAAAGGCTTCTTACAACCATACTGCTTACAAGAACCAGT CGAGGCTGTTCTGGTACCGCCGCTGTGGACACAAAAGGGGGGGGAAAAAT GTTGTTTTTATTCTTTTCTTTTCTTTTTGAGACGGCTGCAGGCGGCGCAA TGTGTTTTTTTTCTCGTTAGTTGGCAACATGCTGATTAAAATCGTCTCGT GCGACGATAGGCCTTCGATTTCGACATAAAAACTCAACCCACGGCCAACC CGCTTGGTGTCGGGCAAGGCCAACGAGTGTAGATGACGGCCTCGAAGATA TCAGGTGGATCCACGGTCCAAAGGGCGAGAGCTTGCCGGCGGCATCCTAT ACTCTTCTTCTCCCAAACCTGAAAAAAAAAGTTTTTTTTTGCCATTCGAG ACAGATCGAGAACTTCTGTCATCTGTTTTGTGCACTCCAGCGGTCATTTT TTTTTTTAATCATACTCCTGGCCACCGCCCGCCACATATCACCGGCCATT ATGTAAACACGGTGATCCTAGGGTGGGTAGGAGCCCCCAACGAGCGCATT CCGTTCAAAATTCATGACGCCGTCGTTGGTTTTGTCGATCGATGTCTGTC GAGGACTCGGAATCTCGCCGGTTCGAACTAAACATCCGCCGGATTTTTTC TGAAACCGATCTTGGCCCAACAACATCGTCCCCAGAATTATCTTTTTCTG GGTTTTCCAAAAGTTTGGAACTTTCGGTTTGAAGAATCGTGCTCTCGTCG CAAGCTGTACCTCAAGTATTCTGGTGGGTATCTTTGGAATCCATTTTTAA TATGGGAGCTTTGCGTTTCCATTGGCATAGGTATAGCGTTGTCGAGAAAA CAATCAATAATTGCGCTGAAAAACGTTCGTACCTCTGTGCTAAGCCAACG CTCTTTACGCTAATTTCAATATAAATGTTGTTTTTCTTCATGTTTCGTGC AAAAATCGGGCCAGGCTGTCTTGACCCTTTTAGTACGAGTGGTGCACTTT CTTTTTTCTGTACAGAAAACATATACCTGATCACTCTAATTCCAAGTAAT ATGTCCCAAAATCAAGAGGGGAGTGTGGTCCTAAATACGGTAGGTTAACT CCCTTTTTCCCTGCAGTAGTACTATGGCGAGCTGTACGATACGGCACCGT TATGGGAGTTGGAATACACATCGTACGGGTGCGAACCGGACCGAACCGTT GCTGTACCGGGTTGCGGGGGGATGCCTGTAGGGTCCGAACTGCAATGCAA CAAGTTCGCATCTCTAACAAATCAGATAGATCCATCTACAGATCAGATAG ATCGTCTACTTTAGATCATCTAGTTCCTCAACTGTGTCGTTGTGAGAGGT TGTGCAGGATCTAGTGGGCTAGATCGTGCAGATTATTCGGCGATCATACA GCTCAGTGATCTGACTGCCCTGGAATAGCTAGATCTTGAAGTGGGAATTC TCTGTAGGGTGATCTATCTATAACTGATCTGTCTGTCGGAGGTGCCAAGG TGTGCGGCACGCGTGCAAGCGTGAATCCTACTGGCACTGCTGTGAGATAA CACTATTTACACCGATAGATGGTTGGTGTGACCTCAGTTATCGTGTGATC GGTCGCTACGCCTACACTAGTCTATCCCCCCGAAGTAATTGCGCCATTAC CTCACTGCAGTAGTTTGACACGCAGTAGTACTTACAGTAGTCTCACGCAG CAGAAGGAACGTGCCAGCTTTTGCTTTTGTTCCACACAATACCCAATCAT GGCTGGTATACGTACCGCAGGATTTACCTCTTGCTTCCTCTGAATCTATC AACAATTTTGGTCGATATTTTTTTTGCTGTTAATCTGCAAGCACCCTTGT CGTTCCTGTCCTCCGAACTATATAGCGAAATAACCCGCATTGCTCACGCA ATCGACCAATCATTGACGGACGCGTGTCGACCTCCCTGGACACATCGTGA ATGAACCTTCAAACCTGTCCAGGTACCTCCAGGGGAAGGACGTGTTCGAG GCGTTCTACAAGAGGGATCTCGCCAAACGGCTCTTGCTAGGGAAAAGCTC CAGCTTCGACCTCGAGAAGTCCATGATCTCCAAGCTGAAGGTGACCGATC GATCGACCGTAAACACTGCCGACGCAGCAACTATCTCCTCTCACTCACTT CACTCGTCATCACTAGGCGGTGTGCCGCTGTAATCTGTTGTATCGCCGCC GTATGTGTAGCGCTGTTGTCTCACTATTGTGAGGTGGAGTACGGTGCTGC TTGCTTGGCGTCGGATGGGCCTTGAGGTTTACCACTCGAACCCGTCGATT GCCCTCTCGTATTTTCCCGTACTGTGGTCGATGATTTTAGGCTTACTTTT TTGGAGTACTACGAACATTTCTGGCGAACATTTCTGGCGCCTTTGTTCGT CCTCTCAAAAGGCATGTCTCGCTCTTCTGTTCCGTGTTGTTTTTGTTGTG TAATCGTAGTCCTTCCCTCTCGAGATAAAGCTTTCTCGTTTTCCGCTCCT GTACGTGTGAAGCTACCGGTATGATGTTTCTCCAGCTCCCTGTGGTTTTA CTTTTTTCGAGTGCTGTGTTTTTTTCGTTGCTGACTTTTTCGACCATTGT TTTCGTTCTCCTTCCCGTTCTCGCGCCCCTGTTGTGCTCCCTGTTCTTGT TCTTATTTGTATGTTCTTGTTGTGTTTTTGTTCTCCTCCTTGTTCTTCTT TTTTCGTCACCATGAAAGACGGAGTGCGGAAGCGCGTTCACGTCTAAGCT GGAGGGGATGTTCAAGGACATCGACCTGAGCAGAGACTTGATGTCCACCT ACTTGCACCACCTCAAGGCAAAGCTAGACGACCGCACCGTGTTCAAGCTC GACAAGAGTAGGGACATGGACCTTCATGTGCAGGTTCTCACGACGGGATA CTGGCCCGCCTACCCCAGCACAGACGTCGGGATGCCGGAGGAAATGCAGG AGCACGTGGAGTGTTTCAAGTGAGATGGTGGCGTTTCTTGTCTCGAAAAA TCTCCCGTGACACACGTACACGACGCACACATGTGGATGGAGGCGTTTTT CGTTGTGACACCTCCTGTGGTATTCATGTATGCGTTACGAGCTTGTACAG TATGCGTACTTCTGTGTCGCTGGCGCTGTGAGCGCGGGTGTCGTGTGATA TCGGAGGCCGGTCGGTTTTGGATGTTGCTGCTGCGTGTGCATGTTTGTAG TGTGTTTGTACAGTAGTGTGTGTAGCCGAATGTGAGCATGGAGCGGGCAC ACACACCCCGCCGCAGCCTGGCCTAGCGCTAGCATTAATTGCGGTGGCTG GGGGCGCGATGCACCTCAGGTGTGTTTTTTGCAATCGAAGGTGGGTTGCA GCTTCTCGCCTGTACCTGGTACGTTGTACCGGGTATTGACGTCCTGTGGC GTCTGCTGATTTATCGCCACTTTCACTACCACTATTGTTGTTGTTCCTGT AAAAACAAAAATTGTTCATGTTGTGTTTTTTTTTGTACCGCTCGTCTCAC GCCTACAACAAACAAACCCGCGTTGAAATATTGTTGATGTTGTGTTTATT TTTTGTACCGCTCGTCTCACGCCTACTTCCAACAAACAAACCCGCTTTCC TTTTTCGTCGATATATTTTCTGTCTTGCGCTCATCCCGCCCCCCTCGCAC GATTCGCCGTTTTTCCCATGTGCGATGACACCGACGGCTCTTCTCACGTT CCTTCCAACGTCGTTTCCAACGGCTCTTTCAACGTCTTCTCCAACGGTTC TTCCGGTGTCTCTGCCACCGGCCCTGCCAATGGCTCTTTCAACGACACTG CCAATGGCTGCATGTACATACGAATGTGCCTAGGTGGTACTACCAGAATA AGTATCAAGGACGCCGACTTGTTTGGCAACCCATGCTGGGACAGTGTGTC GTAAAGGTCGCCTTCCCCAGGGGTCGCAAGGAACTCGCTCTCTCGCAGCT CCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig14101:187..7890+

>mRNA_M-pyrifera_M_contig14101.6176.1 ID=mRNA_M-pyrifera_M_contig14101.6176.1|Name=mRNA_M-pyrifera_M_contig14101.6176.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2010bp|location=Sequence derived from alignment at M-pyrifera_M_contig14101:187..7890+ (Macrocystis pyrifera P11B4 male)
CGGCAGGAGGCGGACCGAGCGTCGCTGTACCTAGACCCGTCGACGCGAAA
ACTGCTCATTGCGCAGGCGGAGGGACAGCTGCTGAAGCCCCACACCCAGC
GGCAGGAGGCGGACCGAGCGTCGCTGTACCTAGACCCGTCGACGCGAAAA
CTGCTCATTGCGCAGGCGGAGGGACAGCTGCTGAAGCCCCACACCCAGGC
GTTGCTGGAGAGGGGATTCGCAAGCCTGATGGATTCGCAGCGATTGCCCG
AGCTGAAGCTCATGTACCAGCTGTTCCAAAGGGTGCATGCGTTAGACGAG
GCGTTGCTGGAGAGGGGATTCGCAAGCCTGATGGATTCGCAGCGATTGCC
CGAGCTGAAGCTCATGTACCAGCTGTTCCAAAGGGTGCATGCGTTAGACG
AGCTCAAGGCCGCTATGACTGCCTACGTACATTCCCGGGGCCTGTACATC
GTACTCGACAAGCTCAAGGCCGCTATGACTGCCTACGTACATTCCCGGGG
CCTGTACATCGTACTCGACAAGGAGAACGACAAGGAAATGGTGTCCAACC
TGCTGGCCTTTAGGGCGCGACTGGACGTGACCGTCGACAAGGCCTGCGAC
GCCAACGAGTCCTACCGATACAAGCTCAAGGAAGCGTGGGAGGGCTTCCT
GAACGCCAGGAGAACGACAAGGAAATGGTGTCCAACCTGCTGGCCTTTAG
GGCGCGACTGGACGTGACCGTCGACAAGGCCTGCGACGCCAACGAGTCCT
ACCGATACAAGCTCAAGGAAGCGTGGGAGGGCTTCCTGAACGCCAGGCAC
AACCGGCCGGCAGAACTGATGGCGAAATTCCTGGACTTAAAGTTGAAGGG
GGAAAAGGGGATGTCGGACGATGACGTGGAAAACGTTCTCGACAAAGTCA
TGGTACTTTTCAGGCACAACCGGCCGGCAGAACTGATGGCGAAATTCCTG
GACTTAAAGTTGAAGGGGGAAAAGGGGATGTCGGACGATGACGTGGAAAA
CGTTCTCGACAAAGTCATGGTACTTTTCAGGTACCTCCAGGGGAAGGACG
TGTTCGAGGCGTTCTACAAGAGGGATCTCGCCAAACGGCTCTTGCTAGGG
AAAAGCTCCAGCTTCGACCTCGAGAAGTCCATGATCTCCAAGCTGAAGGT
ACCTCCAGGGGAAGGACGTGTTCGAGGCGTTCTACAAGAGGGATCTCGCC
AAACGGCTCTTGCTAGGGAAAAGCTCCAGCTTCGACCTCGAGAAGTCCAT
GATCTCCAAGCTGAAGACGGAGTGCGGAAGCGCGTTCACGTCTAAGCTGG
AGGGGATGTTCAAGGACATCGACCTGAGCAGAGACTTGATGTCCACCTAC
TTGCACCACCTCAAGGCAAAGCTAGACGACCGCACCGTGTTCAAGCTCGA
CAAGAGTAGGGACATGGACCTTCATGTGCAGGTTCTCACGACGGGATACT
GGCCCGCCTACCCCAGCACAGACGTCGGGATGCCGGAGGAAATGCAGGAG
CACGTGGAGTGTTTCAAACGGAGTGCGGAAGCGCGTTCACGTCTAAGCTG
GAGGGGATGTTCAAGGACATCGACCTGAGCAGAGACTTGATGTCCACCTA
CTTGCACCACCTCAAGGCAAAGCTAGACGACCGCACCGTGTTCAAGCTCG
ACAAGAGTAGGGACATGGACCTTCATGTGCAGGTTCTCACGACGGGATAC
TGGCCCGCCTACCCCAGCACAGACGTCGGGATGCCGGAGGAAATGCAGGA
GCACGTGGAGTGTTTCAAGTGGTACTACCAGAATAAGTATCAAGGACGCC
GACTTGTTTGGCAACCCATGCTGGGACAGTGTGTCGTAAAGGTCGCCTTC
CCCAGGGGTCGCAAGGAACTCGCTCTCTCGCAGCTCCAGGTGGTACTACC
AGAATAAGTATCAAGGACGCCGACTTGTTTGGCAACCCATGCTGGGACAG
TGTGTCGTAAAGGTCGCCTTCCCCAGGGGTCGCAAGGAACTCGCTCTCTC
GCAGCTCCAG
back to top