mRNA_M-pyrifera_M_contig14086.6172.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14086.6172.1
Unique NamemRNA_M-pyrifera_M_contig14086.6172.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig14086.6172.1 vs. uniprot
Match: D7FU91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU91_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.440e-42
Identity = 68/94 (72.34%), Postives = 82/94 (87.23%), Query Frame = 2 
Query:    8 MRKSLQKAQPGSGKKIPNAYRRVKSLDYEDIVEPEDMSQVYMPDIAPALMVDGYNIIFHWAKCCLIADGGDMEGARRLLVEELDTLSAMRGWAV 289
            MRKS++++  G  K + N YRRVK+ DYEDIVEPED+S +YMPDIAPALMVDGYNIIFHW+KC ++AD GD+EGARR+LVEELDTL+AMRGW V
Sbjct:    1 MRKSMERSN-GPKKMVHNKYRRVKNTDYEDIVEPEDLSHIYMPDIAPALMVDGYNIIFHWSKCSIVADNGDLEGARRILVEELDTLAAMRGWTV 93
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BLAST of mRNA_M-pyrifera_M_contig14086.6172.1 vs. uniprot
Match: A0A448ZCZ1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCZ1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.620e-5
Identity = 20/48 (41.67%), Postives = 34/48 (70.83%), Query Frame = 2 
Query:  146 PALMVDGYNIIFHWAKCCLIADGGDMEGARRLLVEELDTLSAMRGWAV 289
            P ++VDGYN+I+ WA+       GD++ AR LL+E+L+ L+++R W +
Sbjct:  297 PLVLVDGYNVIYKWARLKKHMARGDVQHARELLLEDLEGLASLRRWRI 344
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14086.6172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU91_ECTSI1.440e-4272.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A448ZCZ1_9STRA8.620e-541.67Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14086contigM-pyrifera_M_contig14086:2330..4772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size291
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14086.6172.1prot_M-pyrifera_M_contig14086.6172.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14086 2337..4772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.1839058-UTR-M-pyrifera_M_contig14086:2329..23361622815835.1839058-UTR-M-pyrifera_M_contig14086:2329..2336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14086 2330..2336 +
1692277597.021282-UTR-M-pyrifera_M_contig14086:2329..23361692277597.021282-UTR-M-pyrifera_M_contig14086:2329..2336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14086 2330..2336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.1972585-CDS-M-pyrifera_M_contig14086:2336..24261622815835.1972585-CDS-M-pyrifera_M_contig14086:2336..2426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14086 2337..2426 +
1692277597.0296133-CDS-M-pyrifera_M_contig14086:2336..24261692277597.0296133-CDS-M-pyrifera_M_contig14086:2336..2426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14086 2337..2426 +
1622815835.211656-CDS-M-pyrifera_M_contig14086:3369..34371622815835.211656-CDS-M-pyrifera_M_contig14086:3369..3437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14086 3370..3437 +
1692277597.037531-CDS-M-pyrifera_M_contig14086:3369..34371692277597.037531-CDS-M-pyrifera_M_contig14086:3369..3437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14086 3370..3437 +
1622815835.2272081-CDS-M-pyrifera_M_contig14086:4648..47721622815835.2272081-CDS-M-pyrifera_M_contig14086:4648..4772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14086 4649..4772 +
1692277597.0451815-CDS-M-pyrifera_M_contig14086:4648..47721692277597.0451815-CDS-M-pyrifera_M_contig14086:4648..4772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14086 4649..4772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14086.6172.1

>prot_M-pyrifera_M_contig14086.6172.1 ID=prot_M-pyrifera_M_contig14086.6172.1|Name=mRNA_M-pyrifera_M_contig14086.6172.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MRKSLQKAQPGSGKKIPNAYRRVKSLDYEDIVEPEDMSQVYMPDIAPALM
VDGYNIIFHWAKCCLIADGGDMEGARRLLVEELDTLSAMRGWAV
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mRNA from alignment at M-pyrifera_M_contig14086:2330..4772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14086.6172.1 ID=mRNA_M-pyrifera_M_contig14086.6172.1|Name=mRNA_M-pyrifera_M_contig14086.6172.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2443bp|location=Sequence derived from alignment at M-pyrifera_M_contig14086:2330..4772+ (Macrocystis pyrifera P11B4 male)
CGCTAAGATGAGGAAATCCCTGCAGAAGGCGCAGCCGGGGTCTGGGAAGA
AGATTCCCAATGCGTACCGTCGCGTGAAGAGCCTGGACTACGAAGATGTG
CGTGGGGTTTTAAGGGTGTTTGGGATGGCGTTTCCTTGTATGCACGTATA
ATGGCGTCGTGGTTCCCGCTGAGCTTGATATTTAGTTTTACCAGTCCACC
GGAGGATGTAGCATAACGTAAAATAAGAAAGTTTTTGGGGTTTTGTGGCT
AAAGGGGGGAGGGAAAAGCGGGGGAAAGGGGGGGGTGGTTTTATGCGGGG
AGGGGAAATGTTACCAAGGGTGCAGCAACAGCGAACTCGCAAAAAATCGC
AGGTGATGGTAGGGGAGAGAGGGGAGGAAGATGGTAAGGGTACGGTTTAA
TACTCATACCGCAGGATTTGGTGGTGCAAGGGGGGCAAAGGGGGAGCGGC
TGTGTGAAGGATAGCATGCAAGTGTCTGCTTTTCGGGTAACATCGCAAAA
CGTTAACCTTTTTGATACTGCGAAAGCATCCTACACTAATTTCAAATAGT
TTTACCTCGGAAAACGGAGGTGCAGTTCTTCGTGAAGGGGGCTACGTATG
TTTACACCGTTTCGGCTTGCCGGGATATTCGCAAGCAGACAATTTAGGCG
TCACGTATATTCGATGCGCGAGGTGTTGTCTTTTTGTGCCTCCAGGGGTC
TACTCTCTGCTGAGCTTCCCCTTGCGGTACGTACAGGCTTCCACTCACTA
AGAGACCCAAGTACCGCTGCTATTTCGTTGCCCAAAGTAGTAGTGATGTT
CGATGGCGCGAGGGTTACTAGGGTTACTCCGCTTTGTCTCGTACACACCG
TCAACCATAGTTGTCGAATAAGTGGTAAATCAACCCTTTGGCATTGCTAC
CGACGTATTCTGGCTCGGTTGCCGTTCGTTGTGACATCTGCCCGCGGCGT
GATACGCAATCCCTCCGCTCCCCGCCCCGCCCCCGCCCCTCGCACCCCCC
CCGCCTCTTTACGCCTCCGACATATCTTGTTCGTCTCCAGATAGTAGAGC
CGGAGGACATGTCGCAGGTGTACATGCCCGATATTGCGCCGGCTCTCATG
GTCGACGGGTGAGATGGTTGCGGCGGAGTAACCGGCGGTTCGTTTAGTTC
AGAGCCGCAGCAGCTGCAGCCGCGGCTGATTTGCGTCGTTGCTGTGTCAC
GCGTCACGCGTCGGGCGAGCGGTTGAATTCCACAGACATGGTTTAGCTAC
TACGTTGGGAAACGTGACTATTGAAACACGGGAATGTTTTTTATTTATTT
TCCGATGTCTTAGCAACCGGTTTTGTTACAGAGGTCCCCATGTCCCGACC
CTGGCTTTTGTTACCGTTTTTGTTGTTCCCCCCAAACTCGGTTATCAATG
TTTCCTATCTCCCACTCCCGGAATTGTTCACCTTTTAGGGCTGGTCTTAA
CGAGGAAAGAAACGAAATAAAAAACCCAAAGCAGAACTAAAGAGCACGTG
AGTTTTATTGGTCAAATTAAAAGAAAATTGTAGTAGAGATCCCGACACCT
CCGTTCTCACGTTTCGTTTTTTTCAAGCCTCAGATCACTTAATCCATACG
AAATGGGTGCCAGCCAAATAAATGAAATATGGGGTACCCAGGGTCGAAGA
GGAACATAGGAGGAGCTCGAAGCGTTGGGATAAAGTTCCGATAAAGTTTC
TACAACCGGTTGGTAAGCGCACGATGGCCGAAGTAATGCATGTGGCTGCT
GCCACGCGGCTTGTCTGCTGACGGCGCGAGCATATACGGGTAGGGAATCA
CCAAGGGGTGCCCTCGCAAGAAACCGGGGGATCAAGAAGTGGCTGTGGCG
GTATATTTTTCAACATGAATTCCACTCAACATCCCAACGTTTGCCATCGA
ACAGCGATGGCCGATACACAACTTCTAGAGCACTCCGGAGGGAGTGGGTA
GGACCACGAGAATCGCCTGCTGTGGAGGGTGCCTCGCGTGTGCGAGTTGT
TTCTATCCAAGGTCGTTGTCGAGGGCTATCGCGGGGAATCACGTGCTGTG
CCGGTTGGGTCATTCTGAAAAATTGCACCGCGTACAAATTCGACTCGGCT
TCTTATTTTTGTTTTGTTTTGTTTTTTATAGTTTTTTTTTTCTCGATAAA
ACTCAACCTGATGTTTTTTACGAAAAAGTGAAAGTCTGTTCGTTTGTTTC
TTTTTTTTTTCCTCGTTAGGACCGGCCATTAGTTTTAGTTCCGTTTTTTT
TATTGCCATTTTTTCTTCGTTTGTTTCTACCTTTCTCCCGATTTTTCTCT
TGCCCCATTTCGGCCACAGATACAACATAATTTTTCACTGGGCTAAGTGC
TGCCTCATCGCCGACGGCGGGGACATGGAAGGGGCCAGGAGGCTTCTTGT
CGAGGAGCTCGACACGCTCTCCGCGATGCGTGGCTGGGCCGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14086:2330..4772+

>mRNA_M-pyrifera_M_contig14086.6172.1 ID=mRNA_M-pyrifera_M_contig14086.6172.1|Name=mRNA_M-pyrifera_M_contig14086.6172.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig14086:2330..4772+ (Macrocystis pyrifera P11B4 male)
ATGAGGAAATCCCTGCAGAAGGCGCAGCCGGGGTCTGGGAAGAAGATTCC
CAATGCGTACCGTCGCGTGAAGAGCCTGGACTACGAAGATATGAGGAAAT
CCCTGCAGAAGGCGCAGCCGGGGTCTGGGAAGAAGATTCCCAATGCGTAC
CGTCGCGTGAAGAGCCTGGACTACGAAGATATAGTAGAGCCGGAGGACAT
GTCGCAGGTGTACATGCCCGATATTGCGCCGGCTCTCATGGTCGACGGAT
AGTAGAGCCGGAGGACATGTCGCAGGTGTACATGCCCGATATTGCGCCGG
CTCTCATGGTCGACGGATACAACATAATTTTTCACTGGGCTAAGTGCTGC
CTCATCGCCGACGGCGGGGACATGGAAGGGGCCAGGAGGCTTCTTGTCGA
GGAGCTCGACACGCTCTCCGCGATGCGTGGCTGGGCCGTAATACAACATA
ATTTTTCACTGGGCTAAGTGCTGCCTCATCGCCGACGGCGGGGACATGGA
AGGGGCCAGGAGGCTTCTTGTCGAGGAGCTCGACACGCTCTCCGCGATGC
GTGGCTGGGCCGTA
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