mRNA_M-pyrifera_M_contig14085.6171.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14085.6171.1
Unique NamemRNA_M-pyrifera_M_contig14085.6171.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14085.6171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14085contigM-pyrifera_M_contig14085:6632..6969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.140603-CDS-M-pyrifera_M_contig14085:6631..69671622815835.140603-CDS-M-pyrifera_M_contig14085:6631..6967Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14085 6632..6967 +
1692277597.0124564-CDS-M-pyrifera_M_contig14085:6631..69671692277597.0124564-CDS-M-pyrifera_M_contig14085:6631..6967Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14085 6632..6967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14085.6171.1prot_M-pyrifera_M_contig14085.6171.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14085 6632..6967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14085.6171.1

>prot_M-pyrifera_M_contig14085.6171.1 ID=prot_M-pyrifera_M_contig14085.6171.1|Name=mRNA_M-pyrifera_M_contig14085.6171.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
HQSKHSLHSVRRPVMPWGPELRNLRHRQTKTNVSCISESSRQNCSRKSRF
SLRNAASALLHSSDLVSETRYQPARTNHLLRQALAPQIITTDETGKHRSH
SGVRFRSARPTP
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mRNA from alignment at M-pyrifera_M_contig14085:6632..6969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14085.6171.1 ID=mRNA_M-pyrifera_M_contig14085.6171.1|Name=mRNA_M-pyrifera_M_contig14085.6171.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=338bp|location=Sequence derived from alignment at M-pyrifera_M_contig14085:6632..6969+ (Macrocystis pyrifera P11B4 male)
CACCAGAGTAAGCATTCCCTCCATTCCGTCCGCCGTCCAGTGATGCCCTG
GGGCCCCGAACTCCGAAACCTCCGCCACCGGCAAACAAAAACGAACGTCT
CCTGCATATCTGAGTCAAGTCGACAAAATTGTTCTCGGAAAAGTCGTTTC
TCCTTGCGCAACGCCGCCAGTGCATTGTTGCACTCCAGCGATCTCGTCTC
AGAGACACGGTATCAGCCCGCCCGTACAAACCACCTTTTACGGCAGGCGC
TCGCCCCGCAAATAATCACGACTGACGAGACGGGCAAGCATCGATCCCAC
AGCGGCGTCCGATTCCGGTCGGCTCGACCCACTCCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14085:6632..6969+

>mRNA_M-pyrifera_M_contig14085.6171.1 ID=mRNA_M-pyrifera_M_contig14085.6171.1|Name=mRNA_M-pyrifera_M_contig14085.6171.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig14085:6632..6969+ (Macrocystis pyrifera P11B4 male)
CACCAGAGTAAGCATTCCCTCCATTCCGTCCGCCGTCCAGTGATGCCCTG
GGGCCCCGAACTCCGAAACCTCCGCCACCGGCAAACAAAAACGAACGTCT
CCTGCATATCTGAGTCAAGTCGACAAAATTGTTCTCGGAAAAGTCGTTTC
TCCTTGCGCAACGCCGCCAGTGCATTGTTGCACTCCAGCGATCTCGTCTC
AGAGACACGGTATCAGCCCGCCCGTACAAACCACCTTTTACGGCAGGCGC
TCGCCCCGCAAATAATCACGACTGACGAGACGGGCAAGCATCGATCCCAC
AGCGGCGTCCGATTCCGGTCGGCTCGACCCACTCCACACCAGAGTAAGCA
TTCCCTCCATTCCGTCCGCCGTCCAGTGATGCCCTGGGGCCCCGAACTCC
GAAACCTCCGCCACCGGCAAACAAAAACGAACGTCTCCTGCATATCTGAG
TCAAGTCGACAAAATTGTTCTCGGAAAAGTCGTTTCTCCTTGCGCAACGC
CGCCAGTGCATTGTTGCACTCCAGCGATCTCGTCTCAGAGACACGGTATC
AGCCCGCCCGTACAAACCACCTTTTACGGCAGGCGCTCGCCCCGCAAATA
ATCACGACTGACGAGACGGGCAAGCATCGATCCCACAGCGGCGTCCGATT
CCGGTCGGCTCGACCCACTCCA
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