mRNA_M-pyrifera_M_contig14070.6168.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14070.6168.1
Unique NamemRNA_M-pyrifera_M_contig14070.6168.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14070.6168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14070contigM-pyrifera_M_contig14070:856..1815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size947
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14070.6168.1prot_M-pyrifera_M_contig14070.6168.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14070 856..1378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815834.7884517-CDS-M-pyrifera_M_contig14070:855..12291622815834.7884517-CDS-M-pyrifera_M_contig14070:855..1229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14070 856..1229 -
1692277596.8063495-CDS-M-pyrifera_M_contig14070:855..12291692277596.8063495-CDS-M-pyrifera_M_contig14070:855..1229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14070 856..1229 -
1622815834.8016467-CDS-M-pyrifera_M_contig14070:1242..13781622815834.8016467-CDS-M-pyrifera_M_contig14070:1242..1378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14070 1243..1378 -
1692277596.8167794-CDS-M-pyrifera_M_contig14070:1242..13781692277596.8167794-CDS-M-pyrifera_M_contig14070:1242..1378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14070 1243..1378 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815834.81505-UTR-M-pyrifera_M_contig14070:1378..18151622815834.81505-UTR-M-pyrifera_M_contig14070:1378..1815Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14070 1379..1815 -
1692277596.826215-UTR-M-pyrifera_M_contig14070:1378..18151692277596.826215-UTR-M-pyrifera_M_contig14070:1378..1815Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14070 1379..1815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14070.6168.1

>prot_M-pyrifera_M_contig14070.6168.1 ID=prot_M-pyrifera_M_contig14070.6168.1|Name=mRNA_M-pyrifera_M_contig14070.6168.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MEAQSPLSAHAFVSLLECLLQPRVLLLHSIFKTIPQTLVQLVPVEGIGRK
TNCVRSCRLTQQGHRLEIAFYSPGPPPDANIHLVHLTDSRFFGLFGVVCL
LVAVLYRQLVILFGFLMHGYVNPLLFHSPCPAKPNLSLPPTRCRCGRPHR
QTSRPACECGRWRDSRNRR*
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mRNA from alignment at M-pyrifera_M_contig14070:856..1815-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14070.6168.1 ID=mRNA_M-pyrifera_M_contig14070.6168.1|Name=mRNA_M-pyrifera_M_contig14070.6168.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig14070:856..1815- (Macrocystis pyrifera P11B4 male)
CCTATATCACGCTTTTGGCAGAGTACCGACATGTGGCGCTTCTTTGTCCG
GCAAGCCTTACGACCAAGACATGATGATGCTTTATTTTGAGCGAAACGTT
TCGATAGAAGAGTAGCATCTGGTAGGCAAAATCTCCCCGGAAGTCGGTTG
CTCTAGGGGGCTGGGGGGTCAACCGTGTGTCTTGCCCTTCAGGTCTCCTT
CGAAAACGCCATTTTCTCGCTAGGACGACAAGTGATTGATTGGTCTCTCG
GTTCAAGACGACCGCGTCCCGCCAGCTACAGTAGCCAAACCACATCACAA
CCAGCCAGCTTCGACAGTACTAATAGCCGACATGCACGGCGACCATCTTA
GCCACAGAGAACACCCACAAACCAGCCGACAACCAACCGCAACCGACCGT
ATGAAAGACAACAGGACAAAAAGACCCAGGCCGTGGCATGGAAGCACAAT
CTCCTCTATCTGCACACGCGTTTGTTTCCCTGCTGGAATGCCTCCTTCAA
CCTAGAGTGCTGTTGTTGCACAGCATTTTCAAAACTATTCCCCAGACATT
GGTGCAACTAGTTCCTGTAGAAGGCATTGGTAGAAGGCATTGGTCGGAAA
ACCAACTGTGTTCGTTCGTGTCGCCTTACACAACAGGGTCACCGCCTCGA
AATTGCGTTTTACAGTCCTGGCCCACCCCCCGACGCAAACATACACCTGG
TACACCTTACTGACTCACGATTTTTCGGTTTGTTTGGCGTTGTTTGCTTA
CTAGTTGCCGTGTTGTATCGGCAGCTCGTGATCCTTTTCGGATTCTTGAT
GCACGGGTACGTCAATCCACTTCTATTCCATTCCCCCTGCCCTGCCAAGC
CGAATTTGTCACTGCCGCCCACGCGGTGCCGTTGCGGCCGGCCCCACCGC
CAAACCTCCCGGCCCGCCTGCGAATGTGGCCGCTGGAGGGACAGCCGCAA
CCGGCGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14070:856..1815-

>mRNA_M-pyrifera_M_contig14070.6168.1 ID=mRNA_M-pyrifera_M_contig14070.6168.1|Name=mRNA_M-pyrifera_M_contig14070.6168.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig14070:856..1815- (Macrocystis pyrifera P11B4 male)
ATGGAAGCACAATCTCCTCTATCTGCACACGCGTTTGTTTCCCTGCTGGA
ATGCCTCCTTCAACCTAGAGTGCTGTTGTTGCACAGCATTTTCAAAACTA
TTCCCCAGACATTGGTGCAACTAGTTCCTGTAGAAGATGGAAGCACAATC
TCCTCTATCTGCACACGCGTTTGTTTCCCTGCTGGAATGCCTCCTTCAAC
CTAGAGTGCTGTTGTTGCACAGCATTTTCAAAACTATTCCCCAGACATTG
GTGCAACTAGTTCCTGTAGAAGGCATTGGTCGGAAAACCAACTGTGTTCG
TTCGTGTCGCCTTACACAACAGGGTCACCGCCTCGAAATTGCGTTTTACA
GTCCTGGCCCACCCCCCGACGCAAACATACACCTGGTACACCTTACTGAC
TCACGATTTTTCGGTTTGTTTGGCGTTGTTTGCTTACTAGTTGCCGTGTT
GTATCGGCAGCTCGTGATCCTTTTCGGATTCTTGATGCACGGGTACGTCA
ATCCACTTCTATTCCATTCCCCCTGCCCTGCCAAGCCGAATTTGTCACTG
CCGCCCACGCGGTGCCGTTGCGGCCGGCCCCACCGCCAAACCTCCCGGCC
CGCCTGCGAATGTGGCCGCTGGAGGGACAGCCGCAACCGGCGTTGAGCAT
TGGTCGGAAAACCAACTGTGTTCGTTCGTGTCGCCTTACACAACAGGGTC
ACCGCCTCGAAATTGCGTTTTACAGTCCTGGCCCACCCCCCGACGCAAAC
ATACACCTGGTACACCTTACTGACTCACGATTTTTCGGTTTGTTTGGCGT
TGTTTGCTTACTAGTTGCCGTGTTGTATCGGCAGCTCGTGATCCTTTTCG
GATTCTTGATGCACGGGTACGTCAATCCACTTCTATTCCATTCCCCCTGC
CCTGCCAAGCCGAATTTGTCACTGCCGCCCACGCGGTGCCGTTGCGGCCG
GCCCCACCGCCAAACCTCCCGGCCCGCCTGCGAATGTGGCCGCTGGAGGG
ACAGCCGCAACCGGCGTTGA
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