mRNA_M-pyrifera_M_contig1406.6162.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1406.6162.1
Unique NamemRNA_M-pyrifera_M_contig1406.6162.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: A0A1D8D5F3_9EUKA (NADH dehydrogenase 4L n=1 Tax=Paramoeba pemaquidensis TaxID=180228 RepID=A0A1D8D5F3_9EUKA)

HSP 1 Score: 137 bits (345), Expect = 6.160e-40
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 ISSYKYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            ISSYKYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDL+GQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG
Sbjct:   19 ISSYKYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLIGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: A0A5P8HBA8_9EUKA (NADH dehydrogenase subunit 4l n=1 Tax=Paramoeba aparasomata TaxID=2583407 RepID=A0A5P8HBA8_9EUKA)

HSP 1 Score: 130 bits (326), Expect = 4.810e-37
Identity = 72/100 (72.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 ISSYKYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            +SSYKYI LF+IIFIIGCLGIFVTRQNII             XX       NMDDL+GQMFA+YVLT+AAAESSIGLALVVVYYRLRG+I IDYISTIKG
Sbjct:   19 VSSYKYINLFVIIFIIGCLGIFVTRQNIIIIIMSIELLLLSVXXIFIFLSLNMDDLIGQMFALYVLTVAAAESSIGLALVVVYYRLRGQIAIDYISTIKG 118
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BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: S8EBS0_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8EBS0_9LAMI)

HSP 1 Score: 90.1 bits (222), Expect = 1.860e-21
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:   10 YKYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            +K++ L + +F+IG  G+F+TR+NII                       +DD +GQ+F++Y+LTIAAAES+IGLAL+V+YYRLR  I IDYISTIKG
Sbjct:    4 FKHLFLSLSLFLIGAFGVFITRRNIIVVLMSIELMLLGVNLFFIFLSVFLDDSLGQVFSLYILTIAAAESAIGLALIVIYYRLRSVISIDYISTIKG 100
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BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: A0A1S5R1Y5_9CHLO (NADH dehydrogenase subunit 4L n=1 Tax=Cymbomonas tetramitiformis TaxID=36881 RepID=A0A1S5R1Y5_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 2.960e-20
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   13 KYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            K+I+L +I+F++G  GIF+ R+NII                       +DD++GQ+FA+ VLT+AAAES+IGLAL+VVYYR+RG I ++YI+ +KG
Sbjct:    4 KFISLCVILFLLGIWGIFLNRKNIIIMLMSIELMLLAVNLNFVIFSVYLDDMIGQLFALLVLTVAAAESAIGLALLVVYYRIRGTIAVEYINLVKG 99
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BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: A0A4Q5PYR8_9CYAN (NAD(P)H-quinone oxidoreductase subunit 4L n=6 Tax=cellular organisms TaxID=131567 RepID=A0A4Q5PYR8_9CYAN)

HSP 1 Score: 86.3 bits (212), Expect = 6.110e-20
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   13 KYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            KY+T+ II+F++G  GIF+ R+NII                       +DDLVGQ+FA+ +LT+AAAES+IGLAL+V+YYR+RG I +++I+ IKG
Sbjct:    5 KYLTVSIILFLMGIWGIFLNRKNIIIMLMSIELMLLAVNLNFLLFSVYLDDLVGQLFALLLLTVAAAESAIGLALLVIYYRVRGTIAVEFINLIKG 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: A0A650BXM4_9CHLO (NADH dehydrogenase subunit 4L n=4 Tax=Chlorophyta TaxID=3041 RepID=A0A650BXM4_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 6.110e-20
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:   13 KYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            KY+T   ++F++G  GIF  R+NII                       +DDL+GQ+FA++VLT+AAAES+IGLAL+VVYYR+RG I +++IS +KG
Sbjct:    5 KYLTFSFLLFLLGIWGIFFNRKNIIIMLMSIELMLLAVNLNFLVFSVYLDDLIGQLFALFVLTVAAAESAIGLALLVVYYRVRGTIAVEFISLLKG 100
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BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: U5YDN6_MONSK (NADH dehydrogenase subunit 4L n=1 Tax=Monomastix sp. (strain OKE-1) TaxID=141716 RepID=U5YDN6_MONSK)

HSP 1 Score: 85.1 bits (209), Expect = 1.940e-19
Identity = 43/96 (44.79%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   13 KYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            +++ + I++F++G  GIF+ R+NII                       +DDLVGQMFA+++LT+AAAES+IGLAL+VVYYR+RG I +++I+ IKG
Sbjct:    9 QFLAVSILLFLLGIWGIFLNRKNIIIMLMSIELMLLAVNLNFVLFSVYLDDLVGQMFALFILTVAAAESAIGLALLVVYYRVRGSIAVEFINLIKG 104
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BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: A0A6M8UH99_9CHLO (NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Jaagichlorella hainangensis TaxID=445995 RepID=A0A6M8UH99_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 3.510e-19
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   13 KYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            +Y+T+ II+F++G  GIF+ R+N+I                       +DDLVG++FA+ VLT+AAAES+IGLAL+VVYYR+RG I I++I+ +KG
Sbjct:    5 QYLTVSIILFLLGLSGIFLNRRNLIIMLMSIELMLLAVNLTFLIFSVYLDDLVGEIFALLVLTVAAAESAIGLALLVVYYRVRGHISIEFINLLKG 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: A0A650AKT1_9CHLO (NADH dehydrogenase subunit 4L n=1 Tax=prasinophyte sp. MBIC10622 TaxID=156113 RepID=A0A650AKT1_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 4.970e-19
Identity = 42/96 (43.75%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   13 KYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            KY+T+  ++F++G  GIF+ R+NII                      ++DD++GQ+FA+ VLT+AAAES+IGLA++VVYYR+RG I I++I+ +KG
Sbjct:    5 KYLTVSFVLFLLGIAGIFLNRKNIIIMLMSVELMLLAINMNFLVFSVHLDDMMGQVFALLVLTVAAAESAIGLAILVVYYRVRGTIAIEFINLMKG 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Match: A0A2E3M7D0_9RICK (NADH-quinone oxidoreductase subunit K n=2 Tax=cellular organisms TaxID=131567 RepID=A0A2E3M7D0_9RICK)

HSP 1 Score: 84.0 bits (206), Expect = 5.250e-19
Identity = 42/96 (43.75%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:   13 KYITLFIIIFIIGCLGIFVTRQNIIXXXXXXXXXXXXXXXXXXXXXXNMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG 300
            KY+T+ + +FI G  GI + R+NII                       +DDL+GQMFA++VLT+AAAES+IGLA++V+YYR+RG I I++++ +KG
Sbjct:    7 KYLTVSMTVFIFGICGIILNRKNIIIILMSIELMSLAVNINFIIFSVYLDDLIGQMFALFVLTVAAAESAIGLAILVIYYRVRGSISIEFVNLMKG 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1406.6162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D8D5F3_9EUKA6.160e-4099.00NADH dehydrogenase 4L n=1 Tax=Paramoeba pemaquiden... [more]
A0A5P8HBA8_9EUKA4.810e-3772.00NADH dehydrogenase subunit 4l n=1 Tax=Paramoeba ap... [more]
S8EBS0_9LAMI1.860e-2148.45Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A1S5R1Y5_9CHLO2.960e-2045.83NADH dehydrogenase subunit 4L n=1 Tax=Cymbomonas t... [more]
A0A4Q5PYR8_9CYAN6.110e-2046.88NAD(P)H-quinone oxidoreductase subunit 4L n=6 Tax=... [more]
A0A650BXM4_9CHLO6.110e-2045.83NADH dehydrogenase subunit 4L n=4 Tax=Chlorophyta ... [more]
U5YDN6_MONSK1.940e-1944.79NADH dehydrogenase subunit 4L n=1 Tax=Monomastix s... [more]
A0A6M8UH99_9CHLO3.510e-1945.83NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Ja... [more]
A0A650AKT1_9CHLO4.970e-1943.75NADH dehydrogenase subunit 4L n=1 Tax=prasinophyte... [more]
A0A2E3M7D0_9RICK5.250e-1943.75NADH-quinone oxidoreductase subunit K n=2 Tax=cell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1406contigM-pyrifera_M_contig1406:16176..16478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue2.5e-12
Seed eggNOG ortholog1123059.KB823011_gene1331
Preferred namenuoK
KEGG rclassRC00061
KEGG koko:K00340
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:0098797,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EggNOG OGs1RH0S@1224,2U93P@28211,43Y5K@69657,COG0713@1,COG0713@2
EC1.6.5.3
COG Functional cat.C
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815834.4875827-CDS-M-pyrifera_M_contig1406:16175..164781622815834.4875827-CDS-M-pyrifera_M_contig1406:16175..16478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1406 16176..16478 +
1692277596.6347039-CDS-M-pyrifera_M_contig1406:16175..164781692277596.6347039-CDS-M-pyrifera_M_contig1406:16175..16478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1406 16176..16478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1406.6162.1prot_M-pyrifera_M_contig1406.6162.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1406 16176..16478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1406.6162.1

>prot_M-pyrifera_M_contig1406.6162.1 ID=prot_M-pyrifera_M_contig1406.6162.1|Name=mRNA_M-pyrifera_M_contig1406.6162.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
ISSYKYITLFIIIFIIGCLGIFVTRQNIIIIIMSIELLLLSANLIFIFLS
INMDDLVGQMFAIYVLTIAAAESSIGLALVVVYYRLRGEIGIDYISTIKG
*
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mRNA from alignment at M-pyrifera_M_contig1406:16176..16478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1406.6162.1 ID=mRNA_M-pyrifera_M_contig1406.6162.1|Name=mRNA_M-pyrifera_M_contig1406.6162.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig1406:16176..16478+ (Macrocystis pyrifera P11B4 male)
ATAAGTTCTTATAAATATATAACCCTATTTATAATAATATTTATAATAGG
GTGTTTAGGTATTTTTGTAACCCGTCAAAATATTATTATAATTATAATGT
CTATTGAATTGTTATTATTATCAGCAAATCTTATATTTATATTTTTATCT
ATAAATATGGATGATTTAGTAGGTCAAATGTTTGCTATCTATGTTTTAAC
TATAGCAGCCGCAGAATCATCTATAGGATTAGCACTTGTTGTTGTGTACT
ATAGATTAAGAGGTGAAATAGGTATTGATTATATAAGTACCATTAAAGGT
TAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1406:16176..16478+

>mRNA_M-pyrifera_M_contig1406.6162.1 ID=mRNA_M-pyrifera_M_contig1406.6162.1|Name=mRNA_M-pyrifera_M_contig1406.6162.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig1406:16176..16478+ (Macrocystis pyrifera P11B4 male)
ATAAGTTCTTATAAATATATAACCCTATTTATAATAATATTTATAATAGG
GTGTTTAGGTATTTTTGTAACCCGTCAAAATATTATTATAATTATAATGT
CTATTGAATTGTTATTATTATCAGCAAATCTTATATTTATATTTTTATCT
ATAAATATGGATGATTTAGTAGGTCAAATGTTTGCTATCTATGTTTTAAC
TATAGCAGCCGCAGAATCATCTATAGGATTAGCACTTGTTGTTGTGTACT
ATAGATTAAGAGGTGAAATAGGTATTGATTATATAAGTACCATTAAAGGT
TAAATAAGTTCTTATAAATATATAACCCTATTTATAATAATATTTATAAT
AGGGTGTTTAGGTATTTTTGTAACCCGTCAAAATATTATTATAATTATAA
TGTCTATTGAATTGTTATTATTATCAGCAAATCTTATATTTATATTTTTA
TCTATAAATATGGATGATTTAGTAGGTCAAATGTTTGCTATCTATGTTTT
AACTATAGCAGCCGCAGAATCATCTATAGGATTAGCACTTGTTGTTGTGT
ACTATAGATTAAGAGGTGAAATAGGTATTGATTATATAAGTACCATTAAA
GGTTAA
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